Rroxscaffold_7G00209830

Kynurenine formamidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000645
Physical Location & Seq
Reverse (-)
60104341 .. 60109749
5409 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00209830.1

Sequence Viewer

Length: 288 bp
ATGTTCAAAAATCAGTTTGACCCAAGCTATGTGGGATTTATGAAGGATGGAGCCAAGTGGTTGGTGGAAAACACTGACATCAAACTTGTTGGAATTGATTACTTATCTGCCACTGCATTTGATGATTTGATTCCATCGCACCTTGTTTTTCTAGAAAGTAGGGAAATCATTCTTGTGGAAGCCCTAAAACTTGATGACATCCAACCAGGAATATATTCAGTCCATTGCTTACCTTTGAGGTTGCAGGGTGCAGAAGGATCACCAATCAGATGCATTCTTATCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclase

Protein Analysis

95

Amino Acids

10.69

Weight (kDa)

4.94

Isoelectric Point (pI)

29.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000645)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44542 AT4G34180 AT4G35220
fragaria_vesca FvH4_2g05360 FvH4_2g05360 FvH4_2g05380 FvH4_2g05400
malus_domestica MD00G1024900.v1.1 MD05G1087600.v1.1
prunus_persica Prupe.8G132800_v2.0.a1 Prupe.8G132800_v2.0.a1 Prupe.8G132900_v2.0.a1 Prupe.8G133000_v2.0.a1 Prupe.8G133300_v2.0.a1 Prupe.8G133400_v2.0.a1
pyrus_communis pycom05g08710
rosa_chinensis RchiOBHm_Chr6g0255621 RchiOBHm_Chr6g0255631 RchiOBHm_Chr6g0255661 RchiOBHm_Chr6g0255671 RchiOBHm_Chr6g0255681 RchiOBHm_Chr6g0255711
rosa_laevigata RLG00000014820 RLG00000014821 RLG00000014822 RLG00000014826
rosa_multiflora Rmu_co8458743.1_g000001 Rmu_sc0001422.1_g000004 Rmu_sc0005014.1_g000014 Rmu_sc0010421.1_g000001 Rmu_sc0010421.1_g000005 Rmu_sc0030046.1_g000001 Rmu_sc0039760.1_g000001 Rmu_ssc0000136.1_g000001 Rmu_ssc0000136.1_g000015
rosa_roxburghii Rroxscaffold_7G00209750 Rroxscaffold_7G00209760 Rroxscaffold_7G00209780 Rroxscaffold_7G00209790 Rroxscaffold_7G00209800 Rroxscaffold_7G00209810 Rroxscaffold_7G00209820 Rroxscaffold_7G00209830 Rroxscaffold_7G00209840
rosa_rugosa Rorug05G0559900 Rorug05G0560000 Rorug05G0560200 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560400 Rorug05G0560500
rosa_samantha Rh4BG250600 Rh6AG078600 Rh6AG078700 Rh6BG070800 Rh6BG071000 Rh6BG071200 Rh6BG071300 Rh6BG071600 Rh6BG071700 Rh6CG069300 Rh6CG069400 Rh6CG069700 Rh6CG069800 Rh6CG069900 Rh6DG066300 Rh6DG066400 Rh6DG066800 Rh6DG066900 Rh6DG067100 Rh6DG372200
rosa_wichuraiana Rw2G024460 Rw6G006610 Rw6G006770 Rw6G006780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 265
AgsI TTSAA 1 cut(s) 7
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 1 cut(s) 27
AluI AGCT 1 cut(s) 27
AlwI GGATC 1 cut(s) 265
Asp700I GAANNNNTTC 2 cut(s) 168, 214
AsuHPI GGTGA 1 cut(s) 252
BccI CCATC 2 cut(s) 41, 142
BciT130I CCWGG 1 cut(s) 207
BfaI CTAG 1 cut(s) 152
Bme1390I CCNGG 1 cut(s) 207
BmiI GGNNCC 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 1 cut(s) 260
Bse3DI GCAATG 1 cut(s) 223
BseBI CCWGG 1 cut(s) 207
BseGI GGATG 2 cut(s) 52, 198
BseMI GCAATG 1 cut(s) 223
BsgI GTGCAG 1 cut(s) 270
BsmI GAATGC 1 cut(s) 273
Bsp143I GATC 1 cut(s) 257
BspLI GGNNCC 1 cut(s) 52
BspPI GGATC 1 cut(s) 265
BsrDI GCAATG 1 cut(s) 223
BssMI GATC 1 cut(s) 257
Bst2UI CCWGG 1 cut(s) 207
BstF5I GGATG 2 cut(s) 52, 198
BstKTI GATC 1 cut(s) 260
BstMBI GATC 1 cut(s) 257
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstXI CCANNNNNNTGG 1 cut(s) 61
BtgZI GCGATG 1 cut(s) 120
BtsCI GGATG 2 cut(s) 52, 198
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 2 cut(s) 72, 111
CspCI CAANNNNNGTGG 4 cut(s) 12, 47, 100, 135
CviJI RGCY 3 cut(s) 27, 53, 182
CviKI_1 RGCY 3 cut(s) 27, 53, 182
DpnI GATC 1 cut(s) 259
DpnII GATC 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 205
EcoT22I ATGCAT 1 cut(s) 275
FaiI YATR 3 cut(s) 30, 41, 214
FokI GGATG 2 cut(s) 59, 185
FspBI CTAG 1 cut(s) 152
HinfI GANTC 1 cut(s) 130
HphI GGTGA 1 cut(s) 252
Hpy188I TCNGA 1 cut(s) 269
Hpy188III TCNNGA 1 cut(s) 152
HpyAV CCTTC 2 cut(s) 37, 248
HpyCH4V TGCA 4 cut(s) 116, 244, 251, 273
Kzo9I GATC 1 cut(s) 257
LmnI GCTCC 1 cut(s) 50
LpnPI CCDG 3 cut(s) 192, 219, 230
LweI GCATC 1 cut(s) 260
MaeI CTAG 1 cut(s) 152
MalI GATC 1 cut(s) 259
MboI GATC 1 cut(s) 257
MluCI AATT 1 cut(s) 93
MmeI TCCRAC 2 cut(s) 70, 226
MnlI CCTC 1 cut(s) 231
Mph1103I ATGCAT 1 cut(s) 275
MroXI GAANNNNTTC 2 cut(s) 168, 214
MslI CAYNNNNRTG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 207
Mva1269I GAATGC 1 cut(s) 273
MvaI CCWGG 1 cut(s) 207
NdeII GATC 1 cut(s) 257
NlaIV GGNNCC 1 cut(s) 52
NsiI ATGCAT 1 cut(s) 275
PctI GAATGC 1 cut(s) 273
PdmI GAANNNNTTC 2 cut(s) 168, 214
PfeI GAWTC 1 cut(s) 130
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 52
RseI CAYNNNNRTG 1 cut(s) 173
Sau3AI GATC 1 cut(s) 257
ScrFI CCNGG 1 cut(s) 207
SetI ASST 4 cut(s) 29, 144, 235, 242
SfaNI GCATC 1 cut(s) 260
SmiMI CAYNNNNRTG 1 cut(s) 173
Sse9I AATT 1 cut(s) 93
SspMI CTAG 1 cut(s) 152
StyD4I CCNGG 1 cut(s) 205
TasI AATT 1 cut(s) 93
TfiI GAWTC 1 cut(s) 130
TscAI CASTG 2 cut(s) 79, 118
TspDTI ATGAA 1 cut(s) 56
TspRI CASTG 2 cut(s) 79, 118
XbaI TCTAGA 1 cut(s) 151
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
XmnI GAANNNNTTC 2 cut(s) 168, 214
XspI CTAG 1 cut(s) 152
Zsp2I ATGCAT 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.