Rroxscaffold_7G00209760

Kynurenine formamidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000645
Physical Location & Seq
Forward (+)
60028110 .. 60028840
731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00209760.1

Sequence Viewer

Length: 438 bp
ATGGGATACAACCATGACCATGATCTATATATCTACATAAAAAGACCGAAAACGAGGATGAAGACCCTATACACCATCACCACCGTCACTTCATCCTCCGCCGACCAGGCTTACCCCACCCTCACCGAGGACTGCGCAGTGTCCGGTGAGGATATCCCTGTGCCCATACGGAGGGAGGTGTATGATAACGGTCGAATATTTGACATCAGCCACAGGTACACCCCTGACATGCCCAGTTATGGGGTTAAGGACGGGCTCGGGGAATTCCTGTCGCTTGGCATGATCATCAAAAATGGCTCGGACGCCAACGTTTCCGTGATGAAGTTCAGTGTCCACTCCGGCACCCATGTGGACGCGCCGGGTCATGTCTTCGACCATTACTACGATGCTGGCTTTGATGTTGATGCGCTTGACCTCGAATTCTTAAATGGTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclase

Protein Analysis

145

Amino Acids

16.22

Weight (kDa)

5.01

Isoelectric Point (pI)

28.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclase PF04199 67 - 140 1.2e-07 Putative cyclase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000645)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44542 AT4G34180 AT4G35220
fragaria_vesca FvH4_2g05360 FvH4_2g05360 FvH4_2g05380 FvH4_2g05400
malus_domestica MD00G1024900.v1.1 MD05G1087600.v1.1
prunus_persica Prupe.8G132800_v2.0.a1 Prupe.8G132800_v2.0.a1 Prupe.8G132900_v2.0.a1 Prupe.8G133000_v2.0.a1 Prupe.8G133300_v2.0.a1 Prupe.8G133400_v2.0.a1
pyrus_communis pycom05g08710
rosa_chinensis RchiOBHm_Chr6g0255621 RchiOBHm_Chr6g0255631 RchiOBHm_Chr6g0255661 RchiOBHm_Chr6g0255671 RchiOBHm_Chr6g0255681 RchiOBHm_Chr6g0255711
rosa_laevigata RLG00000014820 RLG00000014821 RLG00000014822 RLG00000014826
rosa_multiflora Rmu_co8458743.1_g000001 Rmu_sc0001422.1_g000004 Rmu_sc0005014.1_g000014 Rmu_sc0010421.1_g000001 Rmu_sc0010421.1_g000005 Rmu_sc0030046.1_g000001 Rmu_sc0039760.1_g000001 Rmu_ssc0000136.1_g000001 Rmu_ssc0000136.1_g000015
rosa_roxburghii Rroxscaffold_7G00209750 Rroxscaffold_7G00209760 Rroxscaffold_7G00209780 Rroxscaffold_7G00209790 Rroxscaffold_7G00209800 Rroxscaffold_7G00209810 Rroxscaffold_7G00209820 Rroxscaffold_7G00209830 Rroxscaffold_7G00209840
rosa_rugosa Rorug05G0559900 Rorug05G0560000 Rorug05G0560200 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560400 Rorug05G0560500
rosa_samantha Rh4BG250600 Rh6AG078600 Rh6AG078700 Rh6BG070800 Rh6BG071000 Rh6BG071200 Rh6BG071300 Rh6BG071600 Rh6BG071700 Rh6CG069300 Rh6CG069400 Rh6CG069700 Rh6CG069800 Rh6CG069900 Rh6DG066300 Rh6DG066400 Rh6DG066800 Rh6DG066900 Rh6DG067100 Rh6DG372200
rosa_wichuraiana Rw2G024460 Rw6G006610 Rw6G006770 Rw6G006780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 136
AccB1I GGYRCC 1 cut(s) 341
AccII CGCG 1 cut(s) 356
AciI CCGC 1 cut(s) 99
AclI AACGTT 1 cut(s) 309
AcsI RAATTY 2 cut(s) 263, 419
AcyI GRCGYC 1 cut(s) 303
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 4 cut(s) 127, 171, 239, 240
AjnI CCWGG 1 cut(s) 105
AleI CACNNNNGTG 1 cut(s) 347
Ama87I CYCGRG 1 cut(s) 257
ApoI RAATTY 2 cut(s) 263, 419
AspLEI GCGC 3 cut(s) 137, 358, 409
AsuC2I CCSGG 1 cut(s) 360
AsuHPI GGTGA 3 cut(s) 70, 115, 158
AvaI CYCGRG 1 cut(s) 257
BaeGI GKGCMC 1 cut(s) 165
BanI GGYRCC 1 cut(s) 341
BanII GRGCYC 1 cut(s) 258
BarI GAAGNNNNNNTAC 2 cut(s) 53, 85
BbsI GAAGAC 2 cut(s) 68, 361
BccI CCATC 1 cut(s) 83
BciT130I CCWGG 1 cut(s) 107
BclI TGATCA 1 cut(s) 282
BcnI CCSGG 1 cut(s) 360
BfaI CTAG 1 cut(s) 436
BglI GCCNNNNNGGC 1 cut(s) 107
Bme1390I CCNGG 2 cut(s) 107, 360
BmeT110I CYCGRG 1 cut(s) 257
BmiI GGNNCC 1 cut(s) 343
BmrFI CCNGG 2 cut(s) 107, 360
BmrI ACTGGG 1 cut(s) 228
BmsI GCATC 2 cut(s) 376, 394
BmuI ACTGGG 1 cut(s) 228
BpiI GAAGAC 2 cut(s) 68, 361
BpuMI CCSGG 1 cut(s) 360
BsaHI GRCGYC 1 cut(s) 303
BsaJI CCNNGG 1 cut(s) 126
BsaWI WCCGGW 1 cut(s) 143
Bsc4I CCNNNNNNNGG 4 cut(s) 127, 171, 239, 240
Bse1I ACTGG 1 cut(s) 234
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 2 cut(s) 63, 92
BseLI CCNNNNNNNGG 4 cut(s) 127, 171, 239, 240
BseNI ACTGG 1 cut(s) 234
BseSI GKGCMC 1 cut(s) 165
Bsh1236I CGCG 1 cut(s) 356
Bsh1285I CGRYCG 1 cut(s) 193
BshNI GGYRCC 1 cut(s) 341
BsiEI CGRYCG 1 cut(s) 193
BsiHKCI CYCGRG 1 cut(s) 257
BsiSI CCGG 3 cut(s) 144, 339, 359
BslI CCNNNNNNNGG 4 cut(s) 127, 171, 239, 240
BsoBI CYCGRG 1 cut(s) 257
Bsp1286I GDGCHC 2 cut(s) 165, 258
Bsp143I GATC 2 cut(s) 22, 282
BspACI CCGC 1 cut(s) 99
BspFNI CGCG 1 cut(s) 356
BspLI GGNNCC 1 cut(s) 343
BspT107I GGYRCC 1 cut(s) 341
BsrI ACTGG 1 cut(s) 234
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 2 cut(s) 22, 282
BssNI GRCGYC 1 cut(s) 303
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 2 cut(s) 85, 191
BstACI GRCGYC 1 cut(s) 303
BstC8I GCNNGC 1 cut(s) 391
BstENI CCTNNNNNAGG 1 cut(s) 125
BstF5I GGATG 2 cut(s) 63, 92
BstFNI CGCG 1 cut(s) 356
BstHHI GCGC 3 cut(s) 137, 358, 409
BstKTI GATC 2 cut(s) 25, 285
BstMBI GATC 2 cut(s) 22, 282
BstMCI CGRYCG 1 cut(s) 193
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstNI CCWGG 1 cut(s) 107
BstNSI RCATGY 1 cut(s) 232
BstSCI CCNGG 2 cut(s) 105, 358
BstSLI GKGCMC 1 cut(s) 165
BstUI CGCG 1 cut(s) 356
BstV2I GAAGAC 2 cut(s) 68, 361
BtsCI GGATG 2 cut(s) 63, 92
BtsI GCAGTG 1 cut(s) 144
BtsIMutI CAGTG 2 cut(s) 144, 334
Cac8I GCNNGC 1 cut(s) 391
CfoI GCGC 3 cut(s) 137, 358, 409
CseI GACGC 2 cut(s) 311, 362
Csp6I GTAC 1 cut(s) 217
CviAII CATG 6 cut(s) 14, 20, 229, 280, 347, 365
CviJI RGCY 5 cut(s) 110, 210, 256, 297, 393
CviKI_1 RGCY 5 cut(s) 110, 210, 256, 297, 393
CviQI GTAC 1 cut(s) 217
DpnI GATC 2 cut(s) 24, 284
DpnII GATC 2 cut(s) 22, 282
EciI GGCGGA 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 258
Eco32I GATATC 1 cut(s) 154
Eco88I CYCGRG 1 cut(s) 257
EcoNI CCTNNNNNAGG 1 cut(s) 125
EcoRI GAATTC 2 cut(s) 263, 419
EcoRII CCWGG 1 cut(s) 105
EcoRV GATATC 1 cut(s) 154
EcoT38I GRGCYC 1 cut(s) 258
FaeI CATG 6 cut(s) 17, 23, 232, 283, 350, 368
FatI CATG 6 cut(s) 13, 19, 228, 279, 346, 364
FbaI TGATCA 1 cut(s) 282
FokI GGATG 2 cut(s) 70, 79
FriOI GRGCYC 1 cut(s) 258
FspBI CTAG 1 cut(s) 436
FspI TGCGCA 1 cut(s) 136
GlaI GCGC 3 cut(s) 136, 357, 408
HapII CCGG 3 cut(s) 144, 339, 359
HgaI GACGC 2 cut(s) 311, 362
HhaI GCGC 3 cut(s) 137, 358, 409
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 6 cut(s) 17, 23, 232, 283, 350, 368
Hin6I GCGC 3 cut(s) 135, 356, 407
HinP1I GCGC 3 cut(s) 135, 356, 407
HpaII CCGG 3 cut(s) 144, 339, 359
HphI GGTGA 3 cut(s) 70, 115, 158
Hpy166II GTNNAC 3 cut(s) 219, 334, 352
Hpy188I TCNGA 1 cut(s) 301
Hpy8I GTNNAC 3 cut(s) 219, 334, 352
HpyCH4III ACNGT 2 cut(s) 85, 191
HpyCH4IV ACGT 1 cut(s) 309
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
HpySE526I ACGT 1 cut(s) 309
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 6 cut(s) 17, 23, 232, 283, 350, 368
HspAI GCGC 3 cut(s) 135, 356, 407
Ksp22I TGATCA 1 cut(s) 282
Kzo9I GATC 2 cut(s) 22, 282
LweI GCATC 2 cut(s) 376, 394
MaeI CTAG 1 cut(s) 436
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 2 cut(s) 85, 431
MalI GATC 2 cut(s) 24, 284
MboI GATC 2 cut(s) 22, 282
MboII GAAGA 2 cut(s) 73, 361
MhlI GDGCHC 2 cut(s) 165, 258
MluCI AATT 2 cut(s) 263, 419
MnlI CCTC 8 cut(s) 48, 106, 121, 131, 142, 165, 169, 425
MseI TTAA 2 cut(s) 246, 425
MslI CAYNNNNRTG 2 cut(s) 18, 347
MspI CCGG 3 cut(s) 144, 339, 359
MspR9I CCNGG 2 cut(s) 107, 360
MvaI CCWGG 1 cut(s) 107
MvnI CGCG 1 cut(s) 356
MwoI GCNNNNNNNGC 1 cut(s) 107
NciI CCSGG 1 cut(s) 360
NdeII GATC 2 cut(s) 22, 282
NlaIII CATG 6 cut(s) 17, 23, 232, 283, 350, 368
NlaIV GGNNCC 1 cut(s) 343
NmuCI GTSAC 1 cut(s) 85
NsbI TGCGCA 1 cut(s) 136
NspI RCATGY 1 cut(s) 232
OliI CACNNNNGTG 1 cut(s) 347
Psp1406I AACGTT 1 cut(s) 309
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 343
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 2 cut(s) 18, 347
SaqAI TTAA 2 cut(s) 246, 425
Sau3AI GATC 2 cut(s) 22, 282
ScrFI CCNGG 2 cut(s) 107, 360
SduI GDGCHC 2 cut(s) 165, 258
SetI ASST 4 cut(s) 180, 218, 312, 417
SfaNI GCATC 2 cut(s) 376, 394
SmiMI CAYNNNNRTG 2 cut(s) 18, 347
Sse9I AATT 2 cut(s) 263, 419
SsiI CCGC 1 cut(s) 99
SspI AATATT 1 cut(s) 198
SspMI CTAG 1 cut(s) 436
StyD4I CCNGG 2 cut(s) 105, 358
TaaI ACNGT 2 cut(s) 85, 191
TaiI ACGT 1 cut(s) 312
TaqI TCGA 3 cut(s) 193, 372, 417
TaqII GACCGA 1 cut(s) 61
TasI AATT 2 cut(s) 263, 419
Tru1I TTAA 2 cut(s) 246, 425
Tru9I TTAA 2 cut(s) 246, 425
TscAI CASTG 2 cut(s) 144, 334
TseFI GTSAC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 3 cut(s) 74, 81, 335
TspGWI ACGGA 2 cut(s) 184, 304
TspRI CASTG 2 cut(s) 144, 334
XagI CCTNNNNNAGG 1 cut(s) 125
XapI RAATTY 2 cut(s) 263, 419
XceI RCATGY 1 cut(s) 232
XspI CTAG 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.