Rorug05G0560500

Kynurenine formamidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000645
Physical Location & Seq
Reverse (-)
75062971 .. 75063381
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0560500.1

Sequence Viewer

Length: 411 bp
ATGTTTATTCGGTACTCACGTGATAAAGCTAGATATGATGGTATTGAGCCTAATGCCTTATGGGTTCAAAGGTTGATCTCTGGGTGTGTAAATGCCTCTAGTTGTCTGGCATTTGGGTTTATCAATAACATGATTCAAGATCTTAGGGTGGTCAAAGATTTTGGAGCTTCATGTAGGCCAAGGCGTGTTCCTCACATTATTGATGAGATTCACTGGCATTCCCCACTAAATGGTTGGATTAAAATGAAGCATGGAAGAGTACATCCAATGAAGCTGGTTACGATGGTGTGTTTAGATATTAGAGGAGTTGTCATTGGCGCACTCTGTTCAAATATTGACATTCCAAGTTCGATAGATGCAAAGGTAATGGAAGTTATCAAAGCCATTGACTTGGCTTGGGTTAGAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclase

Protein Analysis

136

Amino Acids

15.44

Weight (kDa)

9.14

Isoelectric Point (pI)

44.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000645)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44542 AT4G34180 AT4G35220
fragaria_vesca FvH4_2g05360 FvH4_2g05360 FvH4_2g05380 FvH4_2g05400
malus_domestica MD00G1024900.v1.1 MD05G1087600.v1.1
prunus_persica Prupe.8G132800_v2.0.a1 Prupe.8G132800_v2.0.a1 Prupe.8G132900_v2.0.a1 Prupe.8G133000_v2.0.a1 Prupe.8G133300_v2.0.a1 Prupe.8G133400_v2.0.a1
pyrus_communis pycom05g08710
rosa_chinensis RchiOBHm_Chr6g0255621 RchiOBHm_Chr6g0255631 RchiOBHm_Chr6g0255661 RchiOBHm_Chr6g0255671 RchiOBHm_Chr6g0255681 RchiOBHm_Chr6g0255711
rosa_laevigata RLG00000014820 RLG00000014821 RLG00000014822 RLG00000014826
rosa_multiflora Rmu_co8458743.1_g000001 Rmu_sc0001422.1_g000004 Rmu_sc0005014.1_g000014 Rmu_sc0010421.1_g000001 Rmu_sc0010421.1_g000005 Rmu_sc0030046.1_g000001 Rmu_sc0039760.1_g000001 Rmu_ssc0000136.1_g000001 Rmu_ssc0000136.1_g000015
rosa_roxburghii Rroxscaffold_7G00209750 Rroxscaffold_7G00209760 Rroxscaffold_7G00209780 Rroxscaffold_7G00209790 Rroxscaffold_7G00209800 Rroxscaffold_7G00209810 Rroxscaffold_7G00209820 Rroxscaffold_7G00209830 Rroxscaffold_7G00209840
rosa_rugosa Rorug05G0559900 Rorug05G0560000 Rorug05G0560200 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560400 Rorug05G0560500
rosa_samantha Rh4BG250600 Rh6AG078600 Rh6AG078700 Rh6BG070800 Rh6BG071000 Rh6BG071200 Rh6BG071300 Rh6BG071600 Rh6BG071700 Rh6CG069300 Rh6CG069400 Rh6CG069700 Rh6CG069800 Rh6CG069900 Rh6DG066300 Rh6DG066400 Rh6DG066800 Rh6DG066900 Rh6DG067100 Rh6DG372200
rosa_wichuraiana Rw2G024460 Rw6G006610 Rw6G006770 Rw6G006780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 230
AcvI CACGTG 1 cut(s) 20
AfaI GTAC 2 cut(s) 14, 261
AfiI CCNNNNNNNGG 1 cut(s) 230
AgsI TTSAA 3 cut(s) 68, 137, 330
AluBI AGCT 3 cut(s) 29, 167, 274
AluI AGCT 3 cut(s) 29, 167, 274
Alw26I GTCTC 1 cut(s) 399
AoxI GGCC 1 cut(s) 176
AspLEI GCGC 1 cut(s) 320
BaeI ACNNNNGTAYC 1 cut(s) 37
BbrPI CACGTG 1 cut(s) 20
BccI CCATC 2 cut(s) 32, 277
BcoDI GTCTC 1 cut(s) 399
BfaI CTAG 3 cut(s) 30, 99, 409
BglII AGATCT 1 cut(s) 139
BmsI GCATC 1 cut(s) 346
BsaAI YACGTR 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 179
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse1I ACTGG 1 cut(s) 218
BseDI CCNNGG 1 cut(s) 179
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 1 cut(s) 230
BseNI ACTGG 1 cut(s) 218
BseRI GAGGAG 1 cut(s) 318
BshFI GGCC 1 cut(s) 178
BslI CCNNNNNNNGG 1 cut(s) 230
BsmAI GTCTC 1 cut(s) 399
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 1 cut(s) 178
Bsp143I GATC 2 cut(s) 75, 139
BspANI GGCC 1 cut(s) 178
BsrI ACTGG 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 179
BssMI GATC 2 cut(s) 75, 139
BssT1I CCWWGG 1 cut(s) 179
Bst6I CTCTTC 1 cut(s) 250
BstBAI YACGTR 1 cut(s) 20
BstDEI CTNAG 1 cut(s) 143
BstF5I GGATG 1 cut(s) 262
BstHHI GCGC 1 cut(s) 320
BstKTI GATC 2 cut(s) 78, 142
BstMAI GTCTC 1 cut(s) 399
BstMBI GATC 2 cut(s) 75, 139
BstX2I RGATCY 1 cut(s) 139
BstXI CCANNNNNNTGG 1 cut(s) 391
BstYI RGATCY 1 cut(s) 139
BsuRI GGCC 1 cut(s) 178
BtsCI GGATG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 211
CfoI GCGC 1 cut(s) 320
Csp6I GTAC 2 cut(s) 13, 260
CviAII CATG 3 cut(s) 130, 171, 251
CviJI RGCY 7 cut(s) 29, 49, 167, 178, 274, 383, 395
CviKI_1 RGCY 7 cut(s) 29, 49, 167, 178, 274, 383, 395
CviQI GTAC 2 cut(s) 13, 260
DdeI CTNAG 1 cut(s) 143
DpnI GATC 2 cut(s) 77, 141
DpnII GATC 2 cut(s) 75, 139
Eam1104I CTCTTC 1 cut(s) 250
EarI CTCTTC 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 179
Eco72I CACGTG 1 cut(s) 20
EcoT14I CCWWGG 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 179
FaeI CATG 3 cut(s) 133, 174, 254
FaiI YATR 5 cut(s) 36, 61, 131, 172, 252
FatI CATG 3 cut(s) 129, 170, 250
FokI GGATG 1 cut(s) 249
FspBI CTAG 3 cut(s) 30, 99, 409
GlaI GCGC 1 cut(s) 319
HaeIII GGCC 1 cut(s) 178
HhaI GCGC 1 cut(s) 320
Hin1II CATG 3 cut(s) 133, 174, 254
Hin6I GCGC 1 cut(s) 318
HinP1I GCGC 1 cut(s) 318
HinfI GANTC 2 cut(s) 133, 208
Hpy188III TCNNGA 1 cut(s) 137
HpyCH4IV ACGT 1 cut(s) 19
HpyCH4V TGCA 1 cut(s) 359
HpyF3I CTNAG 1 cut(s) 143
HpySE526I ACGT 1 cut(s) 19
Hsp92II CATG 3 cut(s) 133, 174, 254
HspAI GCGC 1 cut(s) 318
Kzo9I GATC 2 cut(s) 75, 139
LmnI GCTCC 1 cut(s) 164
LpnPI CCDG 4 cut(s) 66, 92, 199, 260
LweI GCATC 1 cut(s) 346
MaeI CTAG 3 cut(s) 30, 99, 409
MaeII ACGT 1 cut(s) 19
MaeIII GTNAC 1 cut(s) 277
MalI GATC 2 cut(s) 77, 141
MboI GATC 2 cut(s) 75, 139
MboII GAAGA 1 cut(s) 267
MflI RGATCY 1 cut(s) 139
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 3 cut(s) 106, 201, 296
MseI TTAA 1 cut(s) 240
Mva1269I GAATGC 1 cut(s) 217
NdeII GATC 2 cut(s) 75, 139
NlaIII CATG 3 cut(s) 133, 174, 254
PcsI WCGNNNNNNNCGW 1 cut(s) 16
PctI GAATGC 1 cut(s) 217
PfeI GAWTC 2 cut(s) 133, 208
PflMI CCANNNNNTGG 1 cut(s) 230
PmaCI CACGTG 1 cut(s) 20
PmlI CACGTG 1 cut(s) 20
Ppu21I YACGTR 1 cut(s) 20
PspCI CACGTG 1 cut(s) 20
PsuI RGATCY 1 cut(s) 139
RsaI GTAC 2 cut(s) 14, 261
RsaNI GTAC 2 cut(s) 13, 260
SaqAI TTAA 1 cut(s) 240
Sau3AI GATC 2 cut(s) 75, 139
SetI ASST 6 cut(s) 22, 31, 74, 169, 276, 366
SfaNI GCATC 1 cut(s) 346
SspI AATATT 1 cut(s) 334
SspMI CTAG 3 cut(s) 30, 99, 409
StyI CCWWGG 1 cut(s) 179
TaiI ACGT 1 cut(s) 22
TaqI TCGA 1 cut(s) 350
TatI WGTACW 1 cut(s) 259
TfiI GAWTC 2 cut(s) 133, 208
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 1 cut(s) 218
TspDTI ATGAA 3 cut(s) 159, 260, 284
TspRI CASTG 1 cut(s) 218
Van91I CCANNNNNTGG 1 cut(s) 230
XcmI CCANNNNNNNNNTGG 1 cut(s) 231
XspI CTAG 3 cut(s) 30, 99, 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.