Rmu_sc0001422.1_g000004

Kynurenine formamidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001422.1
OG0000645
Physical Location & Seq
Forward (+)
18313 .. 22675
4363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001422.1_g000004.1.cds

Sequence Viewer

Length: 912 bp
atgaatccaatccttctccttctcctcttctcccttcaggccaccctctcccacgccaccacagcctacccttccattccgggcaccacccccgtcgacgtctcctccggcgccaccgccaccaacctggtcccccctcgccgcgaagtccacggaaacggccgaatcttcgacatcagccaccgctacacccccgacatgccggcgtttggctccgccgacggcgtcggccagttcctctggctcccctacagcatgaagaacggctccattgctaacaactccgagatgaagctcgccacccacaccgggacccacgtcgacgcccccggccacttcttcgatcactacttcgacgccggcttcgacgtcgacacgctcgacttggatgtccttaatggtgcggcattgttagttgacgttccgagagataagaacattactgctgaagtcatggagggcttacatattcccaagggggtgagtcgtgtacttttcagaactttgaacacagacaaacggcttatgttccaaaaggagtttgacagcagctatgttggattcatggaggatggagccaagtggttggtggagaacactgacatcaaactgattggaattgattacttatctgctgctgcatatgatgatttgagttcgtctcaccttgttttgctagaaggcagggagatcattcttgtagaaggttgcaaggtgcagaaggatctccgatccgatgcattcttatcaaatgagcagactccttttatatccttgaaacagcaacagccccagggaaagttgcataccaatgaaacggacagcatccgagttcttgcaaggaatgaaagcgacgggctagcaaaatggttcgactaccgtgacccccaataccttacattcatggagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclase

Protein Analysis

303

Amino Acids

33.7

Weight (kDa)

5.09

Isoelectric Point (pI)

31.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000645)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44542 AT4G34180 AT4G35220
fragaria_vesca FvH4_2g05360 FvH4_2g05360 FvH4_2g05380 FvH4_2g05400
malus_domestica MD00G1024900.v1.1 MD05G1087600.v1.1
prunus_persica Prupe.8G132800_v2.0.a1 Prupe.8G132800_v2.0.a1 Prupe.8G132900_v2.0.a1 Prupe.8G133000_v2.0.a1 Prupe.8G133300_v2.0.a1 Prupe.8G133400_v2.0.a1
pyrus_communis pycom05g08710
rosa_chinensis RchiOBHm_Chr6g0255621 RchiOBHm_Chr6g0255631 RchiOBHm_Chr6g0255661 RchiOBHm_Chr6g0255671 RchiOBHm_Chr6g0255681 RchiOBHm_Chr6g0255711
rosa_laevigata RLG00000014820 RLG00000014821 RLG00000014822 RLG00000014826
rosa_multiflora Rmu_co8458743.1_g000001 Rmu_sc0001422.1_g000004 Rmu_sc0005014.1_g000014 Rmu_sc0010421.1_g000001 Rmu_sc0010421.1_g000005 Rmu_sc0030046.1_g000001 Rmu_sc0039760.1_g000001 Rmu_ssc0000136.1_g000001 Rmu_ssc0000136.1_g000015
rosa_roxburghii Rroxscaffold_7G00209750 Rroxscaffold_7G00209760 Rroxscaffold_7G00209780 Rroxscaffold_7G00209790 Rroxscaffold_7G00209800 Rroxscaffold_7G00209810 Rroxscaffold_7G00209820 Rroxscaffold_7G00209830 Rroxscaffold_7G00209840
rosa_rugosa Rorug05G0559900 Rorug05G0560000 Rorug05G0560200 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560400 Rorug05G0560500
rosa_samantha Rh4BG250600 Rh6AG078600 Rh6AG078700 Rh6BG070800 Rh6BG071000 Rh6BG071200 Rh6BG071300 Rh6BG071600 Rh6BG071700 Rh6CG069300 Rh6CG069400 Rh6CG069700 Rh6CG069800 Rh6CG069900 Rh6DG066300 Rh6DG066400 Rh6DG066800 Rh6DG066900 Rh6DG067100 Rh6DG372200
rosa_wichuraiana Rw2G024460 Rw6G006610 Rw6G006770 Rw6G006780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 389
AatII GACGTC 2 cut(s) 102, 372
AccB1I GGYRCC 2 cut(s) 83, 110
AccI GTMKAC 3 cut(s) 96, 321, 372
AccII CGCG 1 cut(s) 144
AciI CCGC 5 cut(s) 117, 142, 184, 216, 404
AclWI GGATC 2 cut(s) 726, 732
AcoI YGGCCR 3 cut(s) 160, 229, 331
AcuI CTGAAG 2 cut(s) 20, 468
AcyI GRCGYC 6 cut(s) 99, 111, 225, 324, 357, 369
AfaI GTAC 1 cut(s) 492
AfiI CCNNNNNNNGG 2 cut(s) 209, 309
AgsI TTSAA 2 cut(s) 508, 778
AjiI CACGTC 1 cut(s) 319
AjnI CCWGG 2 cut(s) 126, 792
AluBI AGCT 2 cut(s) 295, 552
AluI AGCT 2 cut(s) 295, 552
Alw26I GTCTC 2 cut(s) 106, 666
AlwI GGATC 2 cut(s) 726, 732
AoxI GGCC 4 cut(s) 39, 160, 229, 331
ApeKI GCWGC 3 cut(s) 549, 635, 638
ArsI GACNNNNNNTTYG 2 cut(s) 347, 379
AspLEI GCGC 1 cut(s) 113
AspS9I GGNCC 2 cut(s) 130, 312
AsuC2I CCSGG 3 cut(s) 81, 310, 330
AsuHPI GGTGA 2 cut(s) 493, 656
AsuNHI GCTAGC 1 cut(s) 859
AvaII GGWCC 2 cut(s) 130, 312
BaeGI GKGCMC 1 cut(s) 86
BanI GGYRCC 2 cut(s) 83, 110
BbvI GCAGC 3 cut(s) 561, 622, 625
BccI CCATC 1 cut(s) 566
BceAI ACGGC 4 cut(s) 175, 238, 280, 536
BciT130I CCWGG 2 cut(s) 128, 794
BcnI CCSGG 3 cut(s) 81, 310, 330
BcoDI GTCTC 2 cut(s) 106, 666
BfaI CTAG 2 cut(s) 677, 860
BfmI CTRYAG 1 cut(s) 250
BfoI RGCGCY 1 cut(s) 114
BisI GCNGC 5 cut(s) 142, 405, 550, 636, 639
BlsI GCNGC 5 cut(s) 143, 406, 551, 637, 640
Bme1390I CCNGG 5 cut(s) 81, 128, 310, 330, 794
Bme18I GGWCC 2 cut(s) 130, 312
BmgBI CACGTC 1 cut(s) 319
BmgT120I GGNCC 2 cut(s) 130, 312
BmiI GGNNCC 9 cut(s) 85, 112, 132, 214, 245, 268, 313, 314, 577
BmrFI CCNGG 5 cut(s) 81, 128, 310, 330, 794
BmsI GCATC 2 cut(s) 727, 834
BmtI GCTAGC 1 cut(s) 863
BoxI GACNNNNGTC 1 cut(s) 317
BplI GAGNNNNNCTC 2 cut(s) 646, 678
BpuMI CCSGG 3 cut(s) 81, 310, 330
BsaHI GRCGYC 6 cut(s) 99, 111, 225, 324, 357, 369
BsaJI CCNNGG 5 cut(s) 151, 328, 474, 792, 793
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 309
Bse118I RCCGGY 2 cut(s) 202, 359
Bse1I ACTGG 1 cut(s) 232
Bse3DI GCAATG 1 cut(s) 270
BseBI CCWGG 2 cut(s) 128, 794
BseDI CCNNGG 5 cut(s) 151, 328, 474, 792, 793
BseGI GGATG 3 cut(s) 394, 577, 825
BseLI CCNNNNNNNGG 2 cut(s) 209, 309
BseMI GCAATG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 232
BseRI GAGGAG 2 cut(s) 14, 94
BseSI GKGCMC 1 cut(s) 86
BseX3I CGGCCG 1 cut(s) 160
BseXI GCAGC 3 cut(s) 561, 622, 625
BsgI GTGCAG 1 cut(s) 737
Bsh1236I CGCG 1 cut(s) 144
Bsh1285I CGRYCG 1 cut(s) 163
BshFI GGCC 4 cut(s) 41, 162, 231, 333
BshNI GGYRCC 2 cut(s) 83, 110
BsiEI CGRYCG 1 cut(s) 163
BsiSI CCGG 6 cut(s) 80, 108, 203, 309, 330, 360
BslFI GGGAC 2 cut(s) 116, 325
BslI CCNNNNNNNGG 2 cut(s) 209, 309
BsmAI GTCTC 2 cut(s) 106, 666
BsmBI CGTCTC 2 cut(s) 106, 666
BsmFI GGGAC 2 cut(s) 116, 325
BsmI GAATGC 1 cut(s) 740
BsnI GGCC 4 cut(s) 41, 162, 231, 333
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 4 cut(s) 343, 690, 724, 731
BspACI CCGC 5 cut(s) 117, 142, 184, 216, 404
BspANI GGCC 4 cut(s) 41, 162, 231, 333
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 9 cut(s) 85, 112, 132, 214, 245, 268, 313, 314, 577
BspOI GCTAGC 1 cut(s) 863
BspPI GGATC 2 cut(s) 726, 732
BspT107I GGYRCC 2 cut(s) 83, 110
BsrDI GCAATG 1 cut(s) 270
BsrFI RCCGGY 2 cut(s) 202, 359
BsrI ACTGG 1 cut(s) 232
BssAI RCCGGY 2 cut(s) 202, 359
BssECI CCNNGG 5 cut(s) 151, 328, 474, 792, 793
BssMI GATC 4 cut(s) 343, 690, 724, 731
BssNI GRCGYC 6 cut(s) 99, 111, 225, 324, 357, 369
BssT1I CCWWGG 1 cut(s) 474
Bst2UI CCWGG 2 cut(s) 128, 794
Bst4CI ACNGT 1 cut(s) 881
Bst6I CTCTTC 1 cut(s) 32
BstACI GRCGYC 6 cut(s) 99, 111, 225, 324, 357, 369
BstC8I GCNNGC 4 cut(s) 204, 297, 361, 861
BstDSI CCRYGG 1 cut(s) 151
BstF5I GGATG 3 cut(s) 394, 577, 825
BstFNI CGCG 1 cut(s) 144
BstH2I RGCGCY 1 cut(s) 114
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 4 cut(s) 346, 693, 727, 734
BstMAI GTCTC 2 cut(s) 106, 666
BstMBI GATC 4 cut(s) 343, 690, 724, 731
BstMCI CGRYCG 1 cut(s) 163
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 2 cut(s) 128, 794
BstNSI RCATGY 1 cut(s) 202
BstPAI GACNNNNGTC 1 cut(s) 317
BstSCI CCNGG 5 cut(s) 79, 126, 308, 328, 792
BstSFI CTRYAG 1 cut(s) 250
BstSLI GKGCMC 1 cut(s) 86
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 3 cut(s) 561, 622, 625
BstX2I RGATCY 1 cut(s) 724
BstXI CCANNNNNNTGG 2 cut(s) 127, 586
BstYI RGATCY 1 cut(s) 724
BstZI CGGCCG 1 cut(s) 160
BsuRI GGCC 4 cut(s) 41, 162, 231, 333
BtgI CCRYGG 1 cut(s) 151
BtrI CACGTC 1 cut(s) 319
BtsCI GGATG 3 cut(s) 394, 577, 825
BtsIMutI CAGTG 1 cut(s) 597
Cac8I GCNNGC 4 cut(s) 204, 297, 361, 861
CfoI GCGC 1 cut(s) 113
Cfr10I RCCGGY 2 cut(s) 202, 359
Cfr13I GGNCC 2 cut(s) 130, 312
CseI GACGC 3 cut(s) 214, 332, 365
CsiI ACCWGGT 1 cut(s) 126
Csp6I GTAC 1 cut(s) 491
CviAII CATG 5 cut(s) 199, 256, 454, 565, 904
CviQI GTAC 1 cut(s) 491
DinI GGCGCC 1 cut(s) 112
DpnI GATC 4 cut(s) 345, 692, 726, 733
DpnII GATC 4 cut(s) 343, 690, 724, 731
DrdI GACNNNNNNGTC 1 cut(s) 389
DseDI GACNNNNNNGTC 1 cut(s) 389
EaeI YGGCCR 3 cut(s) 160, 229, 331
EagI CGGCCG 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
EciI GGCGGA 1 cut(s) 205
EclXI CGGCCG 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 474
Eco47I GGWCC 2 cut(s) 130, 312
Eco52I CGGCCG 1 cut(s) 160
Eco57I CTGAAG 2 cut(s) 20, 468
EcoO109I RGGNCCY 1 cut(s) 312
EcoRII CCWGG 2 cut(s) 126, 792
EcoT14I CCWWGG 1 cut(s) 474
EcoT22I ATGCAT 1 cut(s) 742
EgeI GGCGCC 1 cut(s) 112
EheI GGCGCC 1 cut(s) 112
ErhI CCWWGG 1 cut(s) 474
Esp3I CGTCTC 2 cut(s) 106, 666
FaeI CATG 5 cut(s) 202, 259, 457, 568, 907
FaqI GGGAC 2 cut(s) 116, 325
FatI CATG 5 cut(s) 198, 255, 453, 564, 903
FauNDI CATATG 1 cut(s) 643
FblI GTMKAC 3 cut(s) 96, 321, 372
Fnu4HI GCNGC 5 cut(s) 142, 405, 550, 636, 639
FokI GGATG 3 cut(s) 401, 584, 812
Fsp4HI GCNGC 5 cut(s) 142, 405, 550, 636, 639
FspBI CTAG 2 cut(s) 677, 860
GlaI GCGC 1 cut(s) 112
GluI GCNGC 5 cut(s) 142, 405, 550, 636, 639
HaeII RGCGCY 1 cut(s) 114
HaeIII GGCC 4 cut(s) 41, 162, 231, 333
HapII CCGG 6 cut(s) 80, 108, 203, 309, 330, 360
HgaI GACGC 3 cut(s) 214, 332, 365
HhaI GCGC 1 cut(s) 113
Hin1I GRCGYC 6 cut(s) 99, 111, 225, 324, 357, 369
Hin1II CATG 5 cut(s) 202, 259, 457, 568, 907
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HincII GTYRAC 4 cut(s) 97, 322, 373, 418
HindII GTYRAC 4 cut(s) 97, 322, 373, 418
HinfI GANTC 5 cut(s) 4, 165, 484, 561, 760
HpaII CCGG 6 cut(s) 80, 108, 203, 309, 330, 360
HphI GGTGA 2 cut(s) 493, 656
Hpy166II GTNNAC 6 cut(s) 97, 151, 322, 373, 418, 491
Hpy188I TCNGA 6 cut(s) 286, 426, 500, 731, 736, 830
Hpy8I GTNNAC 6 cut(s) 97, 151, 322, 373, 418, 491
HpyAV CCTTC 7 cut(s) 23, 29, 44, 81, 674, 698, 715
HpyCH4III ACNGT 1 cut(s) 881
HpyCH4IV ACGT 4 cut(s) 99, 318, 369, 420
HpyCH4V TGCA 6 cut(s) 641, 711, 718, 740, 805, 839
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpySE526I ACGT 4 cut(s) 99, 318, 369, 420
Hsp92I GRCGYC 6 cut(s) 99, 111, 225, 324, 357, 369
Hsp92II CATG 5 cut(s) 202, 259, 457, 568, 907
HspAI GCGC 1 cut(s) 111
KasI GGCGCC 1 cut(s) 110
KflI GGGWCCC 1 cut(s) 312
KroI GCCGGC 2 cut(s) 202, 359
KroNI GCCGGC 2 cut(s) 204, 361
Kzo9I GATC 4 cut(s) 343, 690, 724, 731
LmnI GCTCC 4 cut(s) 218, 249, 272, 575
Lsp1109I GCAGC 3 cut(s) 561, 622, 625
LweI GCATC 2 cut(s) 727, 834
MabI ACCWGGT 1 cut(s) 126
MaeI CTAG 2 cut(s) 677, 860
MaeII ACGT 4 cut(s) 99, 318, 369, 420
MaeIII GTNAC 1 cut(s) 881
MalI GATC 4 cut(s) 345, 692, 726, 733
MboI GATC 4 cut(s) 343, 690, 724, 731
MboII GAAGA 4 cut(s) 19, 160, 271, 331
MflI RGATCY 1 cut(s) 724
MhlI GDGCHC 1 cut(s) 86
MluCI AATT 1 cut(s) 618
Mly113I GGCGCC 1 cut(s) 111
MlyI GAGTC 2 cut(s) 493, 754
MmeI TCCRAC 1 cut(s) 538
MnlI CCTC 7 cut(s) 35, 56, 115, 147, 248, 451, 562
Mph1103I ATGCAT 1 cut(s) 742
MroNI GCCGGC 2 cut(s) 202, 359
MseI TTAA 1 cut(s) 396
MslI CAYNNNNRTG 1 cut(s) 810
MspI CCGG 6 cut(s) 80, 108, 203, 309, 330, 360
MspR9I CCNGG 5 cut(s) 81, 128, 310, 330, 794
Mva1269I GAATGC 1 cut(s) 740
MvaI CCWGG 2 cut(s) 128, 794
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 62
NaeI GCCGGC 2 cut(s) 204, 361
NarI GGCGCC 1 cut(s) 111
NciI CCSGG 3 cut(s) 81, 310, 330
NdeI CATATG 1 cut(s) 643
NdeII GATC 4 cut(s) 343, 690, 724, 731
NgoMIV GCCGGC 2 cut(s) 202, 359
NheI GCTAGC 1 cut(s) 859
NlaIII CATG 5 cut(s) 202, 259, 457, 568, 907
NlaIV GGNNCC 9 cut(s) 85, 112, 132, 214, 245, 268, 313, 314, 577
NmuCI GTSAC 1 cut(s) 881
NsiI ATGCAT 1 cut(s) 742
NspI RCATGY 1 cut(s) 202
PasI CCCWGGG 1 cut(s) 793
PcsI WCGNNNNNNNCGW 2 cut(s) 363, 378
PctI GAATGC 1 cut(s) 740
PdiI GCCGGC 2 cut(s) 204, 361
PfeI GAWTC 3 cut(s) 4, 165, 561
PflFI GACNNNGTC 1 cut(s) 224
PkrI GCNGC 5 cut(s) 143, 406, 551, 637, 640
PleI GAGTC 2 cut(s) 492, 754
PluTI GGCGCC 1 cut(s) 114
PpsI GAGTC 2 cut(s) 492, 754
PpuMI RGGWCCY 1 cut(s) 312
PshAI GACNNNNGTC 1 cut(s) 317
Psp5II RGGWCCY 1 cut(s) 312
Psp6I CCWGG 2 cut(s) 126, 792
PspGI CCWGG 2 cut(s) 126, 792
PspN4I GGNNCC 9 cut(s) 85, 112, 132, 214, 245, 268, 313, 314, 577
PspPI GGNCC 2 cut(s) 130, 312
PspPPI RGGWCCY 1 cut(s) 312
PsuI RGATCY 1 cut(s) 724
PsyI GACNNNGTC 1 cut(s) 224
RsaI GTAC 1 cut(s) 492
RsaNI GTAC 1 cut(s) 491
RseI CAYNNNNRTG 1 cut(s) 810
SalI GTCGAC 3 cut(s) 95, 320, 371
SaqAI TTAA 1 cut(s) 396
SatI GCNGC 5 cut(s) 142, 405, 550, 636, 639
Sau3AI GATC 4 cut(s) 343, 690, 724, 731
Sau96I GGNCC 2 cut(s) 130, 312
SchI GAGTC 2 cut(s) 493, 754
ScrFI CCNGG 5 cut(s) 81, 128, 310, 330, 794
SduI GDGCHC 1 cut(s) 86
SexAI ACCWGGT 1 cut(s) 126
SfaNI GCATC 2 cut(s) 727, 834
SfcI CTRYAG 1 cut(s) 250
SfoI GGCGCC 1 cut(s) 112
SgrDI CGTCGACG 2 cut(s) 95, 320
SinI GGWCC 2 cut(s) 130, 312
SmiMI CAYNNNNRTG 1 cut(s) 810
Sse9I AATT 1 cut(s) 618
SsiI CCGC 5 cut(s) 117, 142, 184, 216, 404
SspDI GGCGCC 1 cut(s) 110
SspMI CTAG 2 cut(s) 677, 860
StyD4I CCNGG 5 cut(s) 79, 126, 308, 328, 792
StyI CCWWGG 1 cut(s) 474
TaaI ACNGT 1 cut(s) 881
TaiI ACGT 4 cut(s) 102, 321, 372, 423
TaqI TCGA 9 cut(s) 96, 171, 321, 342, 354, 366, 372, 381, 873
TasI AATT 1 cut(s) 618
TatI WGTACW 1 cut(s) 490
TauI GCSGC 2 cut(s) 144, 407
TfiI GAWTC 3 cut(s) 4, 165, 561
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TscAI CASTG 1 cut(s) 604
TseFI GTSAC 1 cut(s) 881
TseI GCWGC 3 cut(s) 549, 635, 638
Tsp45I GTSAC 1 cut(s) 881
TspDTI ATGAA 7 cut(s) 17, 272, 305, 553, 828, 861, 892
TspGWI ACGGA 2 cut(s) 168, 833
TspRI CASTG 1 cut(s) 604
Tth111I GACNNNGTC 1 cut(s) 224
VpaK11BI GGWCC 2 cut(s) 130, 312
XceI RCATGY 1 cut(s) 202
XcmI CCANNNNNNNNNTGG 1 cut(s) 586
XmiI GTMKAC 3 cut(s) 96, 321, 372
XspI CTAG 2 cut(s) 677, 860
ZraI GACGTC 2 cut(s) 100, 370
Zsp2I ATGCAT 1 cut(s) 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.