Rmu_co8458743.1_g000001

Kynurenine formamidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8458743.1
OG0000645
Physical Location & Seq
Reverse (-)
1 .. 1021
1021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8458743.1_g000001.1.cds

Sequence Viewer

Length: 469 bp
atgaataacacccccctactctatcacctcgtccttcttcttctgctaccatgcaccctagtatacaccatcaccaccgtcacttcatcctccgccaatcaggcttaccccaccctcaccgaggactgctcagtgtccggtgaggatatccctgtgcccatacggagggaggtgtatgataacggtcgaatatttgacatcagccacacgtacacccctgacatgcccagttatggagttaaggacgggcttggggaattcctgtcgcttggcatgagcatcaaaaatggctcggacgccaacgtttcagtgatgaagttcagtgtccactccggcacccatgtggacgcgccgggtcatgtcttcgaccattactacgatgctggctttgatgttgatgcgcttgacctcgaattcttaaatggtcctccactggtggttgatgttccgaggaataagaacataactg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclase

Protein Analysis

156

Amino Acids

17.08

Weight (kDa)

4.6

Isoelectric Point (pI)

37.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000645)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44542 AT4G34180 AT4G35220
fragaria_vesca FvH4_2g05360 FvH4_2g05360 FvH4_2g05380 FvH4_2g05400
malus_domestica MD00G1024900.v1.1 MD05G1087600.v1.1
prunus_persica Prupe.8G132800_v2.0.a1 Prupe.8G132800_v2.0.a1 Prupe.8G132900_v2.0.a1 Prupe.8G133000_v2.0.a1 Prupe.8G133300_v2.0.a1 Prupe.8G133400_v2.0.a1
pyrus_communis pycom05g08710
rosa_chinensis RchiOBHm_Chr6g0255621 RchiOBHm_Chr6g0255631 RchiOBHm_Chr6g0255661 RchiOBHm_Chr6g0255671 RchiOBHm_Chr6g0255681 RchiOBHm_Chr6g0255711
rosa_laevigata RLG00000014820 RLG00000014821 RLG00000014822 RLG00000014826
rosa_multiflora Rmu_co8458743.1_g000001 Rmu_sc0001422.1_g000004 Rmu_sc0005014.1_g000014 Rmu_sc0010421.1_g000001 Rmu_sc0010421.1_g000005 Rmu_sc0030046.1_g000001 Rmu_sc0039760.1_g000001 Rmu_ssc0000136.1_g000001 Rmu_ssc0000136.1_g000015
rosa_roxburghii Rroxscaffold_7G00209750 Rroxscaffold_7G00209760 Rroxscaffold_7G00209780 Rroxscaffold_7G00209790 Rroxscaffold_7G00209800 Rroxscaffold_7G00209810 Rroxscaffold_7G00209820 Rroxscaffold_7G00209830 Rroxscaffold_7G00209840
rosa_rugosa Rorug05G0559900 Rorug05G0560000 Rorug05G0560200 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560400 Rorug05G0560500
rosa_samantha Rh4BG250600 Rh6AG078600 Rh6AG078700 Rh6BG070800 Rh6BG071000 Rh6BG071200 Rh6BG071300 Rh6BG071600 Rh6BG071700 Rh6CG069300 Rh6CG069400 Rh6CG069700 Rh6CG069800 Rh6CG069900 Rh6DG066300 Rh6DG066400 Rh6DG066800 Rh6DG066900 Rh6DG067100 Rh6DG372200
rosa_wichuraiana Rw2G024460 Rw6G006610 Rw6G006770 Rw6G006780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 335
AccI GTMKAC 1 cut(s) 63
AccII CGCG 1 cut(s) 350
AciI CCGC 1 cut(s) 93
AclI AACGTT 1 cut(s) 303
AcsI RAATTY 2 cut(s) 257, 413
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 1 cut(s) 212
AfiI CCNNNNNNNGG 3 cut(s) 121, 165, 233
AflIII ACRYGT 1 cut(s) 207
AleI CACNNNNGTG 1 cut(s) 341
ApoI RAATTY 2 cut(s) 257, 413
AspLEI GCGC 2 cut(s) 352, 403
AspS9I GGNCC 1 cut(s) 425
AsuC2I CCSGG 1 cut(s) 354
AsuHPI GGTGA 4 cut(s) 17, 64, 109, 152
AvaII GGWCC 1 cut(s) 425
BaeGI GKGCMC 1 cut(s) 159
BanI GGYRCC 1 cut(s) 335
BbsI GAAGAC 1 cut(s) 355
BccI CCATC 1 cut(s) 77
BcnI CCSGG 1 cut(s) 354
BfaI CTAG 1 cut(s) 59
BglI GCCNNNNNGGC 1 cut(s) 101
Bme1390I CCNGG 1 cut(s) 354
Bme18I GGWCC 1 cut(s) 425
BmgT120I GGNCC 1 cut(s) 425
BmiI GGNNCC 1 cut(s) 337
BmrFI CCNGG 1 cut(s) 354
BmrI ACTGGG 1 cut(s) 222
BmsI GCATC 3 cut(s) 288, 370, 388
BmuI ACTGGG 1 cut(s) 222
BpiI GAAGAC 1 cut(s) 355
BplI GAGNNNNNCTC 2 cut(s) 113, 145
BpuMI CCSGG 1 cut(s) 354
BsaAI YACGTR 1 cut(s) 210
BsaHI GRCGYC 1 cut(s) 297
BsaJI CCNNGG 2 cut(s) 120, 449
BsaWI WCCGGW 1 cut(s) 137
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 165, 233
Bse1I ACTGG 2 cut(s) 228, 438
BseDI CCNNGG 2 cut(s) 120, 449
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 3 cut(s) 121, 165, 233
BseMII CTCAG 1 cut(s) 144
BseNI ACTGG 2 cut(s) 228, 438
BseSI GKGCMC 1 cut(s) 159
Bsh1236I CGCG 1 cut(s) 350
Bsh1285I CGRYCG 1 cut(s) 187
BshNI GGYRCC 1 cut(s) 335
BsiEI CGRYCG 1 cut(s) 187
BsiSI CCGG 3 cut(s) 138, 333, 353
BslI CCNNNNNNNGG 3 cut(s) 121, 165, 233
Bsp1286I GDGCHC 1 cut(s) 159
BspACI CCGC 1 cut(s) 93
BspCNI CTCAG 1 cut(s) 143
BspFNI CGCG 1 cut(s) 350
BspLI GGNNCC 1 cut(s) 337
BspT107I GGYRCC 1 cut(s) 335
BsrI ACTGG 2 cut(s) 228, 438
BssECI CCNNGG 2 cut(s) 120, 449
BssNAI GTATAC 1 cut(s) 64
BssNI GRCGYC 1 cut(s) 297
Bst1107I GTATAC 1 cut(s) 64
Bst4CI ACNGT 2 cut(s) 79, 185
BstACI GRCGYC 1 cut(s) 297
BstBAI YACGTR 1 cut(s) 210
BstC8I GCNNGC 1 cut(s) 385
BstDEI CTNAG 1 cut(s) 130
BstENI CCTNNNNNAGG 1 cut(s) 119
BstF5I GGATG 1 cut(s) 86
BstFNI CGCG 1 cut(s) 350
BstHHI GCGC 2 cut(s) 352, 403
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNSI RCATGY 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 352
BstSLI GKGCMC 1 cut(s) 159
BstUI CGCG 1 cut(s) 350
BstV2I GAAGAC 1 cut(s) 355
BstZ17I GTATAC 1 cut(s) 64
BtsCI GGATG 1 cut(s) 86
BtsIMutI CAGTG 4 cut(s) 138, 315, 328, 431
Cac8I GCNNGC 1 cut(s) 385
CfoI GCGC 2 cut(s) 352, 403
Cfr13I GGNCC 1 cut(s) 425
CseI GACGC 2 cut(s) 305, 356
Csp6I GTAC 1 cut(s) 211
CviAII CATG 5 cut(s) 51, 223, 274, 341, 359
CviJI RGCY 5 cut(s) 104, 204, 250, 291, 387
CviKI_1 RGCY 5 cut(s) 104, 204, 250, 291, 387
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 1 cut(s) 130
EciI GGCGGA 1 cut(s) 82
Eco32I GATATC 1 cut(s) 148
Eco47I GGWCC 1 cut(s) 425
EcoNI CCTNNNNNAGG 1 cut(s) 119
EcoRI GAATTC 2 cut(s) 257, 413
EcoRV GATATC 1 cut(s) 148
FaeI CATG 5 cut(s) 54, 226, 277, 344, 362
FatI CATG 5 cut(s) 50, 222, 273, 340, 358
FblI GTMKAC 1 cut(s) 63
FokI GGATG 1 cut(s) 73
FspBI CTAG 1 cut(s) 59
GlaI GCGC 2 cut(s) 351, 402
HapII CCGG 3 cut(s) 138, 333, 353
HgaI GACGC 2 cut(s) 305, 356
HhaI GCGC 2 cut(s) 352, 403
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 5 cut(s) 54, 226, 277, 344, 362
Hin6I GCGC 2 cut(s) 350, 401
HinP1I GCGC 2 cut(s) 350, 401
HpaII CCGG 3 cut(s) 138, 333, 353
HphI GGTGA 4 cut(s) 17, 64, 109, 152
Hpy166II GTNNAC 4 cut(s) 64, 213, 328, 346
Hpy188I TCNGA 2 cut(s) 295, 450
Hpy8I GTNNAC 4 cut(s) 64, 213, 328, 346
HpyAV CCTTC 1 cut(s) 44
HpyCH4III ACNGT 2 cut(s) 79, 185
HpyCH4IV ACGT 2 cut(s) 209, 303
HpyCH4V TGCA 1 cut(s) 54
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 1 cut(s) 130
HpySE526I ACGT 2 cut(s) 209, 303
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 5 cut(s) 54, 226, 277, 344, 362
HspAI GCGC 2 cut(s) 350, 401
LweI GCATC 3 cut(s) 288, 370, 388
MaeI CTAG 1 cut(s) 59
MaeII ACGT 2 cut(s) 209, 303
MaeIII GTNAC 1 cut(s) 79
MboII GAAGA 3 cut(s) 29, 32, 355
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 2 cut(s) 257, 413
MseI TTAA 2 cut(s) 240, 419
MslI CAYNNNNRTG 1 cut(s) 341
MspI CCGG 3 cut(s) 138, 333, 353
MspR9I CCNGG 1 cut(s) 354
MvnI CGCG 1 cut(s) 350
MwoI GCNNNNNNNGC 1 cut(s) 101
NciI CCSGG 1 cut(s) 354
NlaIII CATG 5 cut(s) 54, 226, 277, 344, 362
NlaIV GGNNCC 1 cut(s) 337
NmuCI GTSAC 1 cut(s) 79
NspI RCATGY 1 cut(s) 226
OliI CACNNNNGTG 1 cut(s) 341
Ppu21I YACGTR 1 cut(s) 210
Psp1406I AACGTT 1 cut(s) 303
PspN4I GGNNCC 1 cut(s) 337
PspPI GGNCC 1 cut(s) 425
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
RseI CAYNNNNRTG 1 cut(s) 341
SaqAI TTAA 2 cut(s) 240, 419
Sau96I GGNCC 1 cut(s) 425
ScrFI CCNGG 1 cut(s) 354
SduI GDGCHC 1 cut(s) 159
SetI ASST 5 cut(s) 30, 174, 212, 306, 411
SfaNI GCATC 3 cut(s) 288, 370, 388
SinI GGWCC 1 cut(s) 425
SmiMI CAYNNNNRTG 1 cut(s) 341
Sse9I AATT 2 cut(s) 257, 413
SsiI CCGC 1 cut(s) 93
SspI AATATT 1 cut(s) 192
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 352
TaaI ACNGT 2 cut(s) 79, 185
TaiI ACGT 2 cut(s) 212, 306
TaqI TCGA 3 cut(s) 187, 366, 411
TasI AATT 2 cut(s) 257, 413
Tru1I TTAA 2 cut(s) 240, 419
Tru9I TTAA 2 cut(s) 240, 419
TscAI CASTG 4 cut(s) 138, 315, 328, 438
TseFI GTSAC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 3 cut(s) 17, 75, 329
TspGWI ACGGA 1 cut(s) 178
TspRI CASTG 4 cut(s) 138, 315, 328, 438
VpaK11BI GGWCC 1 cut(s) 425
XagI CCTNNNNNAGG 1 cut(s) 119
XapI RAATTY 2 cut(s) 257, 413
XceI RCATGY 1 cut(s) 226
XmiI GTMKAC 1 cut(s) 63
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.