Rh6DG372200

Kynurenine formamidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000645
Physical Location & Seq
Reverse (-)
56741948 .. 56743077
1130 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG372200.1

Sequence Viewer

Length: 351 bp
ATGAATCCAATCCTTCTCCTTCTCCTCTTTTCCCTTCAGGCCACCCTCTCCCACGCCACCACAGCCTACCCATCCATTCCGGGCACCACCCCCGTCGACGTCTCCTCCGGCGCCACCGCCACCAACCTGTTCCCCCCTCGCCGCGAAGTCCACGGAAACGGTCGAATCTTCGACATCAGCCACCACTACAGCCCCGCCATGCCGGCGTTTGACTCCGTCGACGGCGTTGGCCAGTTCCTCTGGCTCCCCAACAGCATGAAGAACGGCACCATTGCTAACAACACCGAGATGAAGCTCCCCACCCACACCAGAATGCATGTCGACGCCCCCGGCCACGTCTTCGATCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclase

Protein Analysis

116

Amino Acids

12.62

Weight (kDa)

6.41

Isoelectric Point (pI)

46.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000645)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44542 AT4G34180 AT4G35220
fragaria_vesca FvH4_2g05360 FvH4_2g05360 FvH4_2g05380 FvH4_2g05400
malus_domestica MD00G1024900.v1.1 MD05G1087600.v1.1
prunus_persica Prupe.8G132800_v2.0.a1 Prupe.8G132800_v2.0.a1 Prupe.8G132900_v2.0.a1 Prupe.8G133000_v2.0.a1 Prupe.8G133300_v2.0.a1 Prupe.8G133400_v2.0.a1
pyrus_communis pycom05g08710
rosa_chinensis RchiOBHm_Chr6g0255621 RchiOBHm_Chr6g0255631 RchiOBHm_Chr6g0255661 RchiOBHm_Chr6g0255671 RchiOBHm_Chr6g0255681 RchiOBHm_Chr6g0255711
rosa_laevigata RLG00000014820 RLG00000014821 RLG00000014822 RLG00000014826
rosa_multiflora Rmu_co8458743.1_g000001 Rmu_sc0001422.1_g000004 Rmu_sc0005014.1_g000014 Rmu_sc0010421.1_g000001 Rmu_sc0010421.1_g000005 Rmu_sc0030046.1_g000001 Rmu_sc0039760.1_g000001 Rmu_ssc0000136.1_g000001 Rmu_ssc0000136.1_g000015
rosa_roxburghii Rroxscaffold_7G00209750 Rroxscaffold_7G00209760 Rroxscaffold_7G00209780 Rroxscaffold_7G00209790 Rroxscaffold_7G00209800 Rroxscaffold_7G00209810 Rroxscaffold_7G00209820 Rroxscaffold_7G00209830 Rroxscaffold_7G00209840
rosa_rugosa Rorug05G0559900 Rorug05G0560000 Rorug05G0560200 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560400 Rorug05G0560500
rosa_samantha Rh4BG250600 Rh6AG078600 Rh6AG078700 Rh6BG070800 Rh6BG071000 Rh6BG071200 Rh6BG071300 Rh6BG071600 Rh6BG071700 Rh6CG069300 Rh6CG069400 Rh6CG069700 Rh6CG069800 Rh6CG069900 Rh6DG066300 Rh6DG066400 Rh6DG066800 Rh6DG066900 Rh6DG067100 Rh6DG372200
rosa_wichuraiana Rw2G024460 Rw6G006610 Rw6G006770 Rw6G006780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 102
AccB1I GGYRCC 3 cut(s) 83, 110, 266
AccI GTMKAC 3 cut(s) 96, 219, 321
AccII CGCG 1 cut(s) 144
AciI CCGC 3 cut(s) 117, 142, 195
AcoI YGGCCR 2 cut(s) 229, 331
AcuI CTGAAG 1 cut(s) 20
AcyI GRCGYC 3 cut(s) 99, 111, 324
AjiI CACGTC 1 cut(s) 337
AluBI AGCT 1 cut(s) 295
AluI AGCT 1 cut(s) 295
Alw26I GTCTC 1 cut(s) 106
AoxI GGCC 3 cut(s) 39, 229, 331
AspLEI GCGC 1 cut(s) 113
AsuC2I CCSGG 2 cut(s) 81, 330
BaeGI GKGCMC 1 cut(s) 86
BalI TGGCCA 1 cut(s) 231
BanI GGYRCC 3 cut(s) 83, 110, 266
BbsI GAAGAC 1 cut(s) 331
BccI CCATC 1 cut(s) 79
BceAI ACGGC 2 cut(s) 238, 280
BcnI CCSGG 2 cut(s) 81, 330
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 1 cut(s) 349
BfmI CTRYAG 1 cut(s) 187
BfoI RGCGCY 1 cut(s) 114
BglI GCCNNNNNGGC 1 cut(s) 203
BisI GCNGC 1 cut(s) 142
BlsI GCNGC 1 cut(s) 143
Bme1390I CCNGG 2 cut(s) 81, 330
BmgBI CACGTC 1 cut(s) 337
BmiI GGNNCC 4 cut(s) 85, 112, 245, 268
BmrFI CCNGG 2 cut(s) 81, 330
BpiI GAAGAC 1 cut(s) 331
BpuMI CCSGG 2 cut(s) 81, 330
BsaHI GRCGYC 3 cut(s) 99, 111, 324
BsaJI CCNNGG 2 cut(s) 151, 328
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bse118I RCCGGY 1 cut(s) 202
Bse1I ACTGG 1 cut(s) 232
Bse3DI GCAATG 1 cut(s) 270
BseDI CCNNGG 2 cut(s) 151, 328
BseGI GGATG 1 cut(s) 71
BseMI GCAATG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 232
BseRI GAGGAG 2 cut(s) 14, 94
BseSI GKGCMC 1 cut(s) 86
Bsh1236I CGCG 1 cut(s) 144
Bsh1285I CGRYCG 1 cut(s) 163
BshFI GGCC 3 cut(s) 41, 231, 333
BshNI GGYRCC 3 cut(s) 83, 110, 266
BsiEI CGRYCG 1 cut(s) 163
BsiSI CCGG 4 cut(s) 80, 108, 203, 330
BsmAI GTCTC 1 cut(s) 106
BsmBI CGTCTC 1 cut(s) 106
BsmI GAATGC 1 cut(s) 318
BsnI GGCC 3 cut(s) 41, 231, 333
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 1 cut(s) 343
BspACI CCGC 3 cut(s) 117, 142, 195
BspANI GGCC 3 cut(s) 41, 231, 333
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 4 cut(s) 85, 112, 245, 268
BspT107I GGYRCC 3 cut(s) 83, 110, 266
BsrDI GCAATG 1 cut(s) 270
BsrFI RCCGGY 1 cut(s) 202
BsrI ACTGG 1 cut(s) 232
BssAI RCCGGY 1 cut(s) 202
BssECI CCNNGG 2 cut(s) 151, 328
BssMI GATC 1 cut(s) 343
BssNI GRCGYC 3 cut(s) 99, 111, 324
Bst4CI ACNGT 1 cut(s) 161
BstACI GRCGYC 3 cut(s) 99, 111, 324
BstC8I GCNNGC 1 cut(s) 204
BstDSI CCRYGG 1 cut(s) 151
BstF5I GGATG 1 cut(s) 71
BstFNI CGCG 1 cut(s) 144
BstH2I RGCGCY 1 cut(s) 114
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 1 cut(s) 346
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 1 cut(s) 343
BstMCI CGRYCG 1 cut(s) 163
BstMWI GCNNNNNNNGC 2 cut(s) 62, 203
BstNSI RCATGY 1 cut(s) 320
BstSCI CCNGG 2 cut(s) 79, 328
BstSFI CTRYAG 1 cut(s) 187
BstSLI GKGCMC 1 cut(s) 86
BstUI CGCG 1 cut(s) 144
BstV2I GAAGAC 1 cut(s) 331
BsuRI GGCC 3 cut(s) 41, 231, 333
BtgI CCRYGG 1 cut(s) 151
BtrI CACGTC 1 cut(s) 337
BtsCI GGATG 1 cut(s) 71
Cac8I GCNNGC 1 cut(s) 204
CfoI GCGC 1 cut(s) 113
Cfr10I RCCGGY 1 cut(s) 202
CseI GACGC 1 cut(s) 332
CviAII CATG 3 cut(s) 199, 256, 317
CviJI RGCY 8 cut(s) 41, 65, 180, 192, 231, 244, 295, 333
CviKI_1 RGCY 8 cut(s) 41, 65, 180, 192, 231, 244, 295, 333
DinI GGCGCC 1 cut(s) 112
DpnI GATC 1 cut(s) 345
DpnII GATC 1 cut(s) 343
EaeI YGGCCR 2 cut(s) 229, 331
Eco57I CTGAAG 1 cut(s) 20
EcoT22I ATGCAT 1 cut(s) 318
EgeI GGCGCC 1 cut(s) 112
EheI GGCGCC 1 cut(s) 112
Esp3I CGTCTC 1 cut(s) 106
FaeI CATG 3 cut(s) 202, 259, 320
FaiI YATR 3 cut(s) 200, 257, 318
FatI CATG 3 cut(s) 198, 255, 316
FauI CCCGC 1 cut(s) 202
FblI GTMKAC 3 cut(s) 96, 219, 321
Fnu4HI GCNGC 1 cut(s) 142
FokI GGATG 1 cut(s) 58
Fsp4HI GCNGC 1 cut(s) 142
FspBI CTAG 1 cut(s) 349
GlaI GCGC 1 cut(s) 112
GluI GCNGC 1 cut(s) 142
HaeII RGCGCY 1 cut(s) 114
HaeIII GGCC 3 cut(s) 41, 231, 333
HapII CCGG 4 cut(s) 80, 108, 203, 330
HgaI GACGC 1 cut(s) 332
HhaI GCGC 1 cut(s) 113
Hin1I GRCGYC 3 cut(s) 99, 111, 324
Hin1II CATG 3 cut(s) 202, 259, 320
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HincII GTYRAC 3 cut(s) 97, 220, 322
HindII GTYRAC 3 cut(s) 97, 220, 322
HinfI GANTC 3 cut(s) 4, 165, 212
HpaII CCGG 4 cut(s) 80, 108, 203, 330
Hpy166II GTNNAC 4 cut(s) 97, 151, 220, 322
Hpy8I GTNNAC 4 cut(s) 97, 151, 220, 322
Hpy99I CGWCG 5 cut(s) 98, 101, 221, 224, 326
HpyAV CCTTC 3 cut(s) 23, 29, 44
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4IV ACGT 2 cut(s) 99, 336
HpyCH4V TGCA 1 cut(s) 316
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 203
HpySE526I ACGT 2 cut(s) 99, 336
Hsp92I GRCGYC 3 cut(s) 99, 111, 324
Hsp92II CATG 3 cut(s) 202, 259, 320
HspAI GCGC 1 cut(s) 111
KasI GGCGCC 1 cut(s) 110
KroI GCCGGC 1 cut(s) 202
KroNI GCCGGC 1 cut(s) 204
Kzo9I GATC 1 cut(s) 343
LmnI GCTCC 2 cut(s) 249, 300
LpnPI CCDG 9 cut(s) 23, 93, 121, 140, 216, 226, 245, 322, 343
MaeI CTAG 1 cut(s) 349
MaeII ACGT 2 cut(s) 99, 336
MalI GATC 1 cut(s) 345
MboI GATC 1 cut(s) 343
MboII GAAGA 3 cut(s) 160, 271, 331
MhlI GDGCHC 1 cut(s) 86
MlsI TGGCCA 1 cut(s) 231
MluNI TGGCCA 1 cut(s) 231
Mly113I GGCGCC 1 cut(s) 111
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 5 cut(s) 35, 56, 115, 147, 248
Mox20I TGGCCA 1 cut(s) 231
Mph1103I ATGCAT 1 cut(s) 318
MroNI GCCGGC 1 cut(s) 202
MscI TGGCCA 1 cut(s) 231
MslI CAYNNNNRTG 2 cut(s) 287, 311
Msp20I TGGCCA 1 cut(s) 231
MspI CCGG 4 cut(s) 80, 108, 203, 330
MspR9I CCNGG 2 cut(s) 81, 330
Mva1269I GAATGC 1 cut(s) 318
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 2 cut(s) 62, 203
NaeI GCCGGC 1 cut(s) 204
NarI GGCGCC 1 cut(s) 111
NciI CCSGG 2 cut(s) 81, 330
NdeII GATC 1 cut(s) 343
NgoMIV GCCGGC 1 cut(s) 202
NlaIII CATG 3 cut(s) 202, 259, 320
NlaIV GGNNCC 4 cut(s) 85, 112, 245, 268
NsiI ATGCAT 1 cut(s) 318
NspI RCATGY 1 cut(s) 320
PctI GAATGC 1 cut(s) 318
PdiI GCCGGC 1 cut(s) 204
PfeI GAWTC 2 cut(s) 4, 165
PflFI GACNNNGTC 1 cut(s) 215
PkrI GCNGC 1 cut(s) 143
PleI GAGTC 1 cut(s) 206
PluTI GGCGCC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 206
PspN4I GGNNCC 4 cut(s) 85, 112, 245, 268
PsyI GACNNNGTC 1 cut(s) 215
RseI CAYNNNNRTG 2 cut(s) 287, 311
SalI GTCGAC 3 cut(s) 95, 218, 320
SatI GCNGC 1 cut(s) 142
Sau3AI GATC 1 cut(s) 343
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 2 cut(s) 81, 330
SduI GDGCHC 1 cut(s) 86
SetI ASST 4 cut(s) 102, 129, 297, 339
SfcI CTRYAG 1 cut(s) 187
SfoI GGCGCC 1 cut(s) 112
SgrDI CGTCGACG 2 cut(s) 95, 218
SmiMI CAYNNNNRTG 2 cut(s) 287, 311
SsiI CCGC 3 cut(s) 117, 142, 195
SspDI GGCGCC 1 cut(s) 110
SspMI CTAG 1 cut(s) 349
StyD4I CCNGG 2 cut(s) 79, 328
TaaI ACNGT 1 cut(s) 161
TaiI ACGT 2 cut(s) 102, 339
TaqI TCGA 6 cut(s) 96, 163, 171, 219, 321, 342
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 2 cut(s) 4, 165
TspDTI ATGAA 3 cut(s) 17, 272, 305
TspGWI ACGGA 2 cut(s) 168, 205
Tth111I GACNNNGTC 1 cut(s) 215
XceI RCATGY 1 cut(s) 320
XmiI GTMKAC 3 cut(s) 96, 219, 321
XspI CTAG 1 cut(s) 349
ZraI GACGTC 1 cut(s) 100
Zsp2I ATGCAT 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.