Prupe.8G133300_v2.0.a1

Kynurenine formamidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000645
Physical Location & Seq
Forward (+)
15488397 .. 15488961
565 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G133300.1

Sequence Viewer

Length: 330 bp
ATGACTCTGCCACTGTACGGAGAGAGGTGTATGACAACGGTCGAATATTCGACATCAGCCACAGGACGGACTCGGCGAGTTCCTGTGGATGGAGCCAAATGGTTGGTTGAGAACACAGACATCAAACTTATAGGAGTTGATTACTTAGCTGTAGCTGTTTATGAGGAAGCGATTCCAATTCATCATGTTTTTCTACAAGGCAGGGAGATCATTCTTGTCGAGGGTTTAAAGCTCGATGGCATTCCGGCAGGACTATATTCTGTCCACTGCTTGCCCTTGAGGTTGATGGGTTCTGATGGATCCCCAGCAAGATGCATTCTCATCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclase

Protein Analysis

110

Amino Acids

12.0

Weight (kDa)

6.26

Isoelectric Point (pI)

36.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000645)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44542 AT4G34180 AT4G35220
fragaria_vesca FvH4_2g05360 FvH4_2g05360 FvH4_2g05380 FvH4_2g05400
malus_domestica MD00G1024900.v1.1 MD05G1087600.v1.1
prunus_persica Prupe.8G132800_v2.0.a1 Prupe.8G132800_v2.0.a1 Prupe.8G132900_v2.0.a1 Prupe.8G133000_v2.0.a1 Prupe.8G133300_v2.0.a1 Prupe.8G133400_v2.0.a1
pyrus_communis pycom05g08710
rosa_chinensis RchiOBHm_Chr6g0255621 RchiOBHm_Chr6g0255631 RchiOBHm_Chr6g0255661 RchiOBHm_Chr6g0255671 RchiOBHm_Chr6g0255681 RchiOBHm_Chr6g0255711
rosa_laevigata RLG00000014820 RLG00000014821 RLG00000014822 RLG00000014826
rosa_multiflora Rmu_co8458743.1_g000001 Rmu_sc0001422.1_g000004 Rmu_sc0005014.1_g000014 Rmu_sc0010421.1_g000001 Rmu_sc0010421.1_g000005 Rmu_sc0030046.1_g000001 Rmu_sc0039760.1_g000001 Rmu_ssc0000136.1_g000001 Rmu_ssc0000136.1_g000015
rosa_roxburghii Rroxscaffold_7G00209750 Rroxscaffold_7G00209760 Rroxscaffold_7G00209780 Rroxscaffold_7G00209790 Rroxscaffold_7G00209800 Rroxscaffold_7G00209810 Rroxscaffold_7G00209820 Rroxscaffold_7G00209830 Rroxscaffold_7G00209840
rosa_rugosa Rorug05G0559900 Rorug05G0560000 Rorug05G0560200 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560400 Rorug05G0560500
rosa_samantha Rh4BG250600 Rh6AG078600 Rh6AG078700 Rh6BG070800 Rh6BG071000 Rh6BG071200 Rh6BG071300 Rh6BG071600 Rh6BG071700 Rh6CG069300 Rh6CG069400 Rh6CG069700 Rh6CG069800 Rh6CG069900 Rh6DG066300 Rh6DG066400 Rh6DG066800 Rh6DG066900 Rh6DG067100 Rh6DG372200
rosa_wichuraiana Rw2G024460 Rw6G006610 Rw6G006770 Rw6G006780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 294, 307
AfaI GTAC 1 cut(s) 17
AfiI CCNNNNNNNGG 3 cut(s) 17, 66, 89
AluBI AGCT 3 cut(s) 149, 155, 232
AluI AGCT 3 cut(s) 149, 155, 232
AlwI GGATC 2 cut(s) 294, 307
Asp700I GAANNNNTTC 1 cut(s) 171
BamHI GGATCC 1 cut(s) 299
BccI CCATC 4 cut(s) 83, 230, 280, 290
BfmI CTRYAG 1 cut(s) 150
BmiI GGNNCC 2 cut(s) 94, 301
BmsI GCATC 1 cut(s) 302
BoxI GACNNNNGTC 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 298
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 66, 89
BseGI GGATG 1 cut(s) 94
BseLI CCNNNNNNNGG 3 cut(s) 17, 66, 89
BseYI CCCAGC 1 cut(s) 304
Bsh1285I CGRYCG 1 cut(s) 42
BsiEI CGRYCG 1 cut(s) 42
BsiSI CCGG 1 cut(s) 245
BslI CCNNNNNNNGG 3 cut(s) 17, 66, 89
BsmI GAATGC 2 cut(s) 240, 315
Bsp143I GATC 2 cut(s) 207, 299
BspLI GGNNCC 2 cut(s) 94, 301
BspPI GGATC 2 cut(s) 294, 307
BssMI GATC 2 cut(s) 207, 299
Bst4CI ACNGT 2 cut(s) 15, 40
BstC8I GCNNGC 1 cut(s) 272
BstDEI CTNAG 1 cut(s) 145
BstF5I GGATG 1 cut(s) 94
BstKTI GATC 2 cut(s) 210, 302
BstMBI GATC 2 cut(s) 207, 299
BstMCI CGRYCG 1 cut(s) 42
BstPAI GACNNNNGTC 1 cut(s) 38
BstSFI CTRYAG 1 cut(s) 150
BstX2I RGATCY 1 cut(s) 299
BstXI CCANNNNNNTGG 1 cut(s) 103
BstYI RGATCY 1 cut(s) 299
BtsCI GGATG 1 cut(s) 94
BtsI GCAGTG 1 cut(s) 265
BtsIMutI CAGTG 2 cut(s) 11, 265
Cac8I GCNNGC 1 cut(s) 272
Csp6I GTAC 1 cut(s) 16
CviAII CATG 1 cut(s) 185
CviJI RGCY 5 cut(s) 59, 95, 149, 155, 232
CviKI_1 RGCY 5 cut(s) 59, 95, 149, 155, 232
CviQI GTAC 1 cut(s) 16
DdeI CTNAG 1 cut(s) 145
DpnI GATC 2 cut(s) 209, 301
DpnII GATC 2 cut(s) 207, 299
DraI TTTAAA 1 cut(s) 228
EcoT22I ATGCAT 1 cut(s) 317
FaeI CATG 1 cut(s) 188
FaiI YATR 5 cut(s) 32, 131, 162, 186, 256
FatI CATG 1 cut(s) 184
FokI GGATG 1 cut(s) 101
GsaI CCCAGC 1 cut(s) 308
HapII CCGG 1 cut(s) 245
Hin1II CATG 1 cut(s) 188
HinfI GANTC 3 cut(s) 4, 70, 172
HpaII CCGG 1 cut(s) 245
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 1 cut(s) 295
Hpy8I GTNNAC 1 cut(s) 265
HpyCH4III ACNGT 2 cut(s) 15, 40
HpyCH4V TGCA 1 cut(s) 315
HpyF3I CTNAG 1 cut(s) 145
Hsp92II CATG 1 cut(s) 188
Kzo9I GATC 2 cut(s) 207, 299
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 6 cut(s) 48, 96, 187, 234, 258, 318
LweI GCATC 1 cut(s) 302
MalI GATC 2 cut(s) 209, 301
MboI GATC 2 cut(s) 207, 299
MflI RGATCY 1 cut(s) 299
MluCI AATT 1 cut(s) 177
MlyI GAGTC 1 cut(s) 64
MnlI CCTC 4 cut(s) 18, 157, 214, 273
Mph1103I ATGCAT 1 cut(s) 317
MroXI GAANNNNTTC 1 cut(s) 171
MseI TTAA 1 cut(s) 227
MspI CCGG 1 cut(s) 245
Mva1269I GAATGC 2 cut(s) 240, 315
NdeII GATC 2 cut(s) 207, 299
NlaIII CATG 1 cut(s) 188
NlaIV GGNNCC 2 cut(s) 94, 301
NmeAIII GCCGAG 1 cut(s) 52
NsiI ATGCAT 1 cut(s) 317
PcsI WCGNNNNNNNCGW 1 cut(s) 73
PctI GAATGC 2 cut(s) 240, 315
PdmI GAANNNNTTC 1 cut(s) 171
PfeI GAWTC 1 cut(s) 172
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PshAI GACNNNNGTC 1 cut(s) 38
PspFI CCCAGC 1 cut(s) 304
PspN4I GGNNCC 2 cut(s) 94, 301
PsuI RGATCY 1 cut(s) 299
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
SaqAI TTAA 1 cut(s) 227
Sau3AI GATC 2 cut(s) 207, 299
SchI GAGTC 1 cut(s) 64
SetI ASST 5 cut(s) 29, 151, 157, 234, 284
SfaNI GCATC 1 cut(s) 302
SfcI CTRYAG 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 277
SmoI CTYRAG 1 cut(s) 277
Sse9I AATT 1 cut(s) 177
SspI AATATT 1 cut(s) 47
TaaI ACNGT 2 cut(s) 15, 40
TaqI TCGA 4 cut(s) 42, 50, 219, 234
TasI AATT 1 cut(s) 177
TfiI GAWTC 1 cut(s) 172
Tru1I TTAA 1 cut(s) 227
Tru9I TTAA 1 cut(s) 227
TscAI CASTG 2 cut(s) 18, 272
TspDTI ATGAA 1 cut(s) 170
TspGWI ACGGA 2 cut(s) 33, 82
TspRI CASTG 2 cut(s) 18, 272
XmnI GAANNNNTTC 1 cut(s) 171
Zsp2I ATGCAT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.