Rh6DG066300

Kynurenine formamidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000645
Physical Location & Seq
Forward (+)
6751797 .. 6761584
9788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG066300.1

Sequence Viewer

Length: 222 bp
ATGAAGAGAGCGTACGAAATCCCAAACCACCGCCCGACACAAATGAAGACCTTACTCCTCCTCCTACTCTGCTCCCTTTCTCTCACTCTCCGCATTCTCTACGCCGCCACCTCAGCCTATCCTTTCGTTCCCGGCACCGCCCCCGCCGACTGTTCTTTCTCCGACGGCCATGACACCGCCCTTTTGATTCCCCCTCGCCGCGAAGTGTATGGAAATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclase

Protein Analysis

73

Amino Acids

8.05

Weight (kDa)

8.74

Isoelectric Point (pI)

37.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000645)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44542 AT4G34180 AT4G35220
fragaria_vesca FvH4_2g05360 FvH4_2g05360 FvH4_2g05380 FvH4_2g05400
malus_domestica MD00G1024900.v1.1 MD05G1087600.v1.1
prunus_persica Prupe.8G132800_v2.0.a1 Prupe.8G132800_v2.0.a1 Prupe.8G132900_v2.0.a1 Prupe.8G133000_v2.0.a1 Prupe.8G133300_v2.0.a1 Prupe.8G133400_v2.0.a1
pyrus_communis pycom05g08710
rosa_chinensis RchiOBHm_Chr6g0255621 RchiOBHm_Chr6g0255631 RchiOBHm_Chr6g0255661 RchiOBHm_Chr6g0255671 RchiOBHm_Chr6g0255681 RchiOBHm_Chr6g0255711
rosa_laevigata RLG00000014820 RLG00000014821 RLG00000014822 RLG00000014826
rosa_multiflora Rmu_co8458743.1_g000001 Rmu_sc0001422.1_g000004 Rmu_sc0005014.1_g000014 Rmu_sc0010421.1_g000001 Rmu_sc0010421.1_g000005 Rmu_sc0030046.1_g000001 Rmu_sc0039760.1_g000001 Rmu_ssc0000136.1_g000001 Rmu_ssc0000136.1_g000015
rosa_roxburghii Rroxscaffold_7G00209750 Rroxscaffold_7G00209760 Rroxscaffold_7G00209780 Rroxscaffold_7G00209790 Rroxscaffold_7G00209800 Rroxscaffold_7G00209810 Rroxscaffold_7G00209820 Rroxscaffold_7G00209830 Rroxscaffold_7G00209840
rosa_rugosa Rorug05G0559900 Rorug05G0560000 Rorug05G0560200 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560400 Rorug05G0560500
rosa_samantha Rh4BG250600 Rh6AG078600 Rh6AG078700 Rh6BG070800 Rh6BG071000 Rh6BG071200 Rh6BG071300 Rh6BG071600 Rh6BG071700 Rh6CG069300 Rh6CG069400 Rh6CG069700 Rh6CG069800 Rh6CG069900 Rh6DG066300 Rh6DG066400 Rh6DG066800 Rh6DG066900 Rh6DG067100 Rh6DG372200
rosa_wichuraiana Rw2G024460 Rw6G006610 Rw6G006770 Rw6G006780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 134
AccII CGCG 1 cut(s) 201
AciI CCGC 7 cut(s) 31, 91, 105, 138, 144, 177, 199
AcoI YGGCCR 1 cut(s) 166
AfaI GTAC 1 cut(s) 14
AoxI GGCC 1 cut(s) 166
AsuC2I CCSGG 1 cut(s) 132
BanI GGYRCC 1 cut(s) 134
BarI GAAGNNNNNNTAC 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 53
BbvCI CCTCAGC 1 cut(s) 112
BceAI ACGGC 1 cut(s) 181
BcnI CCSGG 1 cut(s) 132
BisI GCNGC 2 cut(s) 105, 199
BlsI GCNGC 2 cut(s) 106, 200
Bme1390I CCNGG 1 cut(s) 132
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 132
BpiI GAAGAC 1 cut(s) 53
Bpu10I CCTNAGC 1 cut(s) 112
BpuMI CCSGG 1 cut(s) 132
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
BseMII CTCAG 1 cut(s) 126
BseRI GAGGAG 2 cut(s) 47, 50
Bsh1236I CGCG 1 cut(s) 201
BshFI GGCC 1 cut(s) 168
BshNI GGYRCC 1 cut(s) 134
BsiSI CCGG 1 cut(s) 132
BsiWI CGTACG 1 cut(s) 12
BsmI GAATGC 1 cut(s) 93
BsnI GGCC 1 cut(s) 168
BspACI CCGC 7 cut(s) 31, 91, 105, 138, 144, 177, 199
BspANI GGCC 1 cut(s) 168
BspCNI CTCAG 1 cut(s) 125
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 136
BspT107I GGYRCC 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 152
BstDEI CTNAG 1 cut(s) 112
BstFNI CGCG 1 cut(s) 201
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 130
BstUI CGCG 1 cut(s) 201
BstV2I GAAGAC 1 cut(s) 53
BsuRI GGCC 1 cut(s) 168
Csp6I GTAC 1 cut(s) 13
CviAII CATG 1 cut(s) 170
CviJI RGCY 3 cut(s) 116, 168, 219
CviKI_1 RGCY 3 cut(s) 116, 168, 219
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 1 cut(s) 112
EaeI YGGCCR 1 cut(s) 166
FaeI CATG 1 cut(s) 173
FaiI YATR 2 cut(s) 171, 210
FatI CATG 1 cut(s) 169
FauI CCCGC 1 cut(s) 151
Fnu4HI GCNGC 2 cut(s) 105, 199
Fsp4HI GCNGC 2 cut(s) 105, 199
GluI GCNGC 2 cut(s) 105, 199
HaeIII GGCC 1 cut(s) 168
HapII CCGG 1 cut(s) 132
Hin1II CATG 1 cut(s) 173
HinfI GANTC 1 cut(s) 187
HpaII CCGG 1 cut(s) 132
Hpy188I TCNGA 1 cut(s) 163
Hpy99I CGWCG 1 cut(s) 167
HpyCH4III ACNGT 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 1 cut(s) 112
Hsp92II CATG 1 cut(s) 173
LmnI GCTCC 1 cut(s) 77
LpnPI CCDG 1 cut(s) 145
MboII GAAGA 2 cut(s) 16, 58
MmeI TCCRAC 1 cut(s) 186
MnlI CCTC 4 cut(s) 68, 71, 121, 204
MspI CCGG 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 132
Mva1269I GAATGC 1 cut(s) 93
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 113
NciI CCSGG 1 cut(s) 132
NlaIII CATG 1 cut(s) 173
NlaIV GGNNCC 1 cut(s) 136
PctI GAATGC 1 cut(s) 93
PfeI GAWTC 1 cut(s) 187
Pfl23II CGTACG 1 cut(s) 12
PkrI GCNGC 2 cut(s) 106, 200
PspLI CGTACG 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 136
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SatI GCNGC 2 cut(s) 105, 199
ScrFI CCNGG 1 cut(s) 132
SetI ASST 2 cut(s) 53, 113
SgeI CNNG 7 cut(s) 46, 143, 144, 155, 182, 207, 212
SsiI CCGC 7 cut(s) 31, 91, 105, 138, 144, 177, 199
StyD4I CCNGG 1 cut(s) 130
TaaI ACNGT 1 cut(s) 152
TauI GCSGC 2 cut(s) 107, 201
TfiI GAWTC 1 cut(s) 187
TspDTI ATGAA 2 cut(s) 17, 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.