RLG00000014826

Kynurenine formamidase-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
58105914 .. 58106381
468 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014826

Sequence Viewer

Length: 309 bp
ATGCCAGCCCTACTTTCACTCACACTCCGCACTCTCTCCGACGCCACCTCAGCCTATCCTTCCGTTCCCGGTACCGCCCCCGCCGACTGTTCTTTCTCCGACGGCCATGACACTGCCCCTCTGATTCCCCCTTGCCGTGAAGTGGTATGGAAATGGCCGAATCTTCGACATAACCCACCAGATCACCACGGCCACGCCATCGTATGGCTCACCGGACGGCGTGCTGGGTCAGTTCCTGTGGTTCCCCCACAGAAAGAAGAACGGCTCCATCGCGTTGATTTGCTGAGTGTTGGCTCAGTTGCATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

103

Amino Acids

11.03

Weight (kDa)

7.0

Isoelectric Point (pI)

52.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000645)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44542 AT4G34180 AT4G35220
fragaria_vesca FvH4_2g05360 FvH4_2g05360 FvH4_2g05380 FvH4_2g05400
malus_domestica MD00G1024900.v1.1 MD05G1087600.v1.1
prunus_persica Prupe.8G132800_v2.0.a1 Prupe.8G132800_v2.0.a1 Prupe.8G132900_v2.0.a1 Prupe.8G133000_v2.0.a1 Prupe.8G133300_v2.0.a1 Prupe.8G133400_v2.0.a1
pyrus_communis pycom05g08710
rosa_chinensis RchiOBHm_Chr6g0255621 RchiOBHm_Chr6g0255631 RchiOBHm_Chr6g0255661 RchiOBHm_Chr6g0255671 RchiOBHm_Chr6g0255681 RchiOBHm_Chr6g0255711
rosa_laevigata RLG00000014820 RLG00000014821 RLG00000014822 RLG00000014826
rosa_multiflora Rmu_co8458743.1_g000001 Rmu_sc0001422.1_g000004 Rmu_sc0005014.1_g000014 Rmu_sc0010421.1_g000001 Rmu_sc0010421.1_g000005 Rmu_sc0030046.1_g000001 Rmu_sc0039760.1_g000001 Rmu_ssc0000136.1_g000001 Rmu_ssc0000136.1_g000015
rosa_roxburghii Rroxscaffold_7G00209750 Rroxscaffold_7G00209760 Rroxscaffold_7G00209780 Rroxscaffold_7G00209790 Rroxscaffold_7G00209800 Rroxscaffold_7G00209810 Rroxscaffold_7G00209820 Rroxscaffold_7G00209830 Rroxscaffold_7G00209840
rosa_rugosa Rorug05G0559900 Rorug05G0560000 Rorug05G0560200 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560400 Rorug05G0560500
rosa_samantha Rh4BG250600 Rh6AG078600 Rh6AG078700 Rh6BG070800 Rh6BG071000 Rh6BG071200 Rh6BG071300 Rh6BG071600 Rh6BG071700 Rh6CG069300 Rh6CG069400 Rh6CG069700 Rh6CG069800 Rh6CG069900 Rh6DG066300 Rh6DG066400 Rh6DG066800 Rh6DG066900 Rh6DG067100 Rh6DG372200
rosa_wichuraiana Rw2G024460 Rw6G006610 Rw6G006770 Rw6G006780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 71
AccB1I GGYRCC 1 cut(s) 71
AccB7I CCANNNNNTGG 1 cut(s) 204
AccII CGCG 1 cut(s) 273
AciI CCGC 3 cut(s) 28, 75, 81
AcoI YGGCCR 3 cut(s) 103, 155, 190
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 1 cut(s) 73
AfiI CCNNNNNNNGG 2 cut(s) 142, 204
AlwNI CAGNNNCTG 1 cut(s) 236
AoxI GGCC 3 cut(s) 103, 155, 190
Asp718I GGTACC 1 cut(s) 71
AsuC2I CCSGG 1 cut(s) 69
AsuHPI GGTGA 2 cut(s) 176, 202
BanI GGYRCC 1 cut(s) 71
BbvCI CCTCAGC 1 cut(s) 49
BccI CCATC 2 cut(s) 206, 276
BceAI ACGGC 5 cut(s) 118, 120, 205, 233, 278
BcnI CCSGG 1 cut(s) 69
Bme1390I CCNGG 1 cut(s) 69
BmiI GGNNCC 3 cut(s) 73, 243, 266
BmrFI CCNGG 1 cut(s) 69
Bpu10I CCTNAGC 1 cut(s) 49
BpuMI CCSGG 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 187
BsaWI WCCGGW 1 cut(s) 212
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 204
BseDI CCNNGG 1 cut(s) 187
BseLI CCNNNNNNNGG 2 cut(s) 142, 204
BseMII CTCAG 3 cut(s) 63, 275, 309
BseYI CCCAGC 1 cut(s) 224
Bsh1236I CGCG 1 cut(s) 273
BshFI GGCC 3 cut(s) 105, 157, 192
BshNI GGYRCC 1 cut(s) 71
BsiSI CCGG 2 cut(s) 69, 213
BslI CCNNNNNNNGG 2 cut(s) 142, 204
BsnI GGCC 3 cut(s) 105, 157, 192
Bsp143I GATC 1 cut(s) 181
BspACI CCGC 3 cut(s) 28, 75, 81
BspANI GGCC 3 cut(s) 105, 157, 192
BspCNI CTCAG 3 cut(s) 62, 276, 308
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 3 cut(s) 73, 243, 266
BspT107I GGYRCC 1 cut(s) 71
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 1 cut(s) 181
BssNI GRCGYC 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 89
BstACI GRCGYC 1 cut(s) 42
BstC8I GCNNGC 2 cut(s) 6, 222
BstDEI CTNAG 3 cut(s) 49, 284, 295
BstDSI CCRYGG 1 cut(s) 187
BstFNI CGCG 1 cut(s) 273
BstKTI GATC 1 cut(s) 184
BstMBI GATC 1 cut(s) 181
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNSI RCATGY 1 cut(s) 306
BstSCI CCNGG 1 cut(s) 67
BstUI CGCG 1 cut(s) 273
BsuRI GGCC 3 cut(s) 105, 157, 192
BtgI CCRYGG 1 cut(s) 187
BtgZI GCGATG 1 cut(s) 254
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 111
Cac8I GCNNGC 2 cut(s) 6, 222
CaiI CAGNNNCTG 1 cut(s) 236
CseI GACGC 1 cut(s) 50
Csp6I GTAC 1 cut(s) 72
CviAII CATG 2 cut(s) 107, 303
CviJI RGCY 8 cut(s) 8, 53, 105, 157, 192, 208, 265, 294
CviKI_1 RGCY 8 cut(s) 8, 53, 105, 157, 192, 208, 265, 294
CviQI GTAC 1 cut(s) 72
DdeI CTNAG 3 cut(s) 49, 284, 295
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
EaeI YGGCCR 3 cut(s) 103, 155, 190
FaeI CATG 2 cut(s) 110, 306
FaiI YATR 5 cut(s) 108, 148, 171, 205, 304
FatI CATG 2 cut(s) 106, 302
FauI CCCGC 1 cut(s) 88
GsaI CCCAGC 1 cut(s) 228
HaeIII GGCC 3 cut(s) 105, 157, 192
HapII CCGG 2 cut(s) 69, 213
HgaI GACGC 1 cut(s) 50
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 2 cut(s) 110, 306
HinfI GANTC 2 cut(s) 124, 160
HpaII CCGG 2 cut(s) 69, 213
HphI GGTGA 2 cut(s) 176, 202
Hpy188I TCNGA 3 cut(s) 40, 100, 123
Hpy99I CGWCG 2 cut(s) 44, 104
HpyAV CCTTC 1 cut(s) 69
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4V TGCA 1 cut(s) 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 3 cut(s) 49, 284, 295
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 2 cut(s) 110, 306
KpnI GGTACC 1 cut(s) 75
Kzo9I GATC 1 cut(s) 181
LmnI GCTCC 1 cut(s) 270
LpnPI CCDG 6 cut(s) 18, 82, 192, 210, 226, 249
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 2 cut(s) 155, 269
MmeI TCCRAC 2 cut(s) 63, 123
MnlI CCTC 2 cut(s) 58, 129
MspI CCGG 2 cut(s) 69, 213
MspR9I CCNGG 1 cut(s) 69
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 1 cut(s) 50
NciI CCSGG 1 cut(s) 69
NdeII GATC 1 cut(s) 181
NlaIII CATG 2 cut(s) 110, 306
NlaIV GGNNCC 3 cut(s) 73, 243, 266
NspI RCATGY 1 cut(s) 306
PfeI GAWTC 2 cut(s) 124, 160
PflMI CCANNNNNTGG 1 cut(s) 204
PspFI CCCAGC 1 cut(s) 224
PspN4I GGNNCC 3 cut(s) 73, 243, 266
PstNI CAGNNNCTG 1 cut(s) 236
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
Sau3AI GATC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 69
SetI ASST 1 cut(s) 50
SsiI CCGC 3 cut(s) 28, 75, 81
StyD4I CCNGG 1 cut(s) 67
TaaI ACNGT 1 cut(s) 89
TaqI TCGA 1 cut(s) 166
TfiI GAWTC 2 cut(s) 124, 160
TscAI CASTG 1 cut(s) 118
TspGWI ACGGA 1 cut(s) 52
TspRI CASTG 1 cut(s) 118
Van91I CCANNNNNTGG 1 cut(s) 204
XceI RCATGY 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.