Rmu_sc0005014.1_g000014

Kynurenine formamidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005014.1
OG0000645
Physical Location & Seq
Forward (+)
102594 .. 102971
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005014.1_g000014.1.cds

Sequence Viewer

Length: 378 bp
atgaatccaatccttctccttctccttctcctcttctcccttcaggccaccctctcccacgccaccacagcctacccttccattccgggaaccaccccccgtcgacgtctcctccgacgccaccaacaccaacctgatcccccctctccgcgaagtccatggaaacggccgaatcttcgacatcagccacagagccaccactacagccccgacatgacggcgttagatcgaatcttcgactcaatcgatggcattggccagttcctatggctccccaacaacatgaagaacgacaccattgctaacaactccgagatgaagctccccacccacaccggaacctatgtcgatgcccccggccacatcttcgatcactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclase

Protein Analysis

125

Amino Acids

14.3

Weight (kDa)

9.69

Isoelectric Point (pI)

74.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000645)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44542 AT4G34180 AT4G35220
fragaria_vesca FvH4_2g05360 FvH4_2g05360 FvH4_2g05380 FvH4_2g05400
malus_domestica MD00G1024900.v1.1 MD05G1087600.v1.1
prunus_persica Prupe.8G132800_v2.0.a1 Prupe.8G132800_v2.0.a1 Prupe.8G132900_v2.0.a1 Prupe.8G133000_v2.0.a1 Prupe.8G133300_v2.0.a1 Prupe.8G133400_v2.0.a1
pyrus_communis pycom05g08710
rosa_chinensis RchiOBHm_Chr6g0255621 RchiOBHm_Chr6g0255631 RchiOBHm_Chr6g0255661 RchiOBHm_Chr6g0255671 RchiOBHm_Chr6g0255681 RchiOBHm_Chr6g0255711
rosa_laevigata RLG00000014820 RLG00000014821 RLG00000014822 RLG00000014826
rosa_multiflora Rmu_co8458743.1_g000001 Rmu_sc0001422.1_g000004 Rmu_sc0005014.1_g000014 Rmu_sc0010421.1_g000001 Rmu_sc0010421.1_g000005 Rmu_sc0030046.1_g000001 Rmu_sc0039760.1_g000001 Rmu_ssc0000136.1_g000001 Rmu_ssc0000136.1_g000015
rosa_roxburghii Rroxscaffold_7G00209750 Rroxscaffold_7G00209760 Rroxscaffold_7G00209780 Rroxscaffold_7G00209790 Rroxscaffold_7G00209800 Rroxscaffold_7G00209810 Rroxscaffold_7G00209820 Rroxscaffold_7G00209830 Rroxscaffold_7G00209840
rosa_rugosa Rorug05G0559900 Rorug05G0560000 Rorug05G0560200 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560400 Rorug05G0560500
rosa_samantha Rh4BG250600 Rh6AG078600 Rh6AG078700 Rh6BG070800 Rh6BG071000 Rh6BG071200 Rh6BG071300 Rh6BG071600 Rh6BG071700 Rh6CG069300 Rh6CG069400 Rh6CG069700 Rh6CG069800 Rh6CG069900 Rh6DG066300 Rh6DG066400 Rh6DG066800 Rh6DG066900 Rh6DG067100 Rh6DG372200
rosa_wichuraiana Rw2G024460 Rw6G006610 Rw6G006770 Rw6G006780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 109
AccI GTMKAC 1 cut(s) 103
AccII CGCG 1 cut(s) 151
AciI CCGC 1 cut(s) 149
AclWI GGATC 1 cut(s) 131
AcoI YGGCCR 3 cut(s) 167, 256, 358
AcuI CTGAAG 1 cut(s) 26
AcyI GRCGYC 2 cut(s) 106, 118
AluBI AGCT 1 cut(s) 322
AluI AGCT 1 cut(s) 322
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 1 cut(s) 131
AoxI GGCC 4 cut(s) 45, 167, 256, 358
AsuC2I CCSGG 2 cut(s) 87, 357
BalI TGGCCA 1 cut(s) 258
BccI CCATC 1 cut(s) 242
BceAI ACGGC 2 cut(s) 182, 234
BcgI CGANNNNNNTGC 2 cut(s) 281, 315
BcnI CCSGG 2 cut(s) 87, 357
BcoDI GTCTC 1 cut(s) 113
BfaI CTAG 1 cut(s) 376
BfmI CTRYAG 1 cut(s) 202
Bme1390I CCNGG 2 cut(s) 87, 357
BmiI GGNNCC 3 cut(s) 91, 272, 340
BmrFI CCNGG 2 cut(s) 87, 357
BmsI GCATC 1 cut(s) 340
BpuMI CCSGG 2 cut(s) 87, 357
Bsa29I ATCGAT 1 cut(s) 246
BsaHI GRCGYC 2 cut(s) 106, 118
BsaJI CCNNGG 2 cut(s) 158, 355
BsaWI WCCGGW 1 cut(s) 335
BsaXI ACNNNNNCTCC 2 cut(s) 96, 126
Bse1I ACTGG 1 cut(s) 259
Bse3DI GCAATG 1 cut(s) 297
BseCI ATCGAT 1 cut(s) 246
BseDI CCNNGG 2 cut(s) 158, 355
BseMI GCAATG 1 cut(s) 297
BseNI ACTGG 1 cut(s) 259
BseRI GAGGAG 2 cut(s) 20, 101
BseX3I CGGCCG 1 cut(s) 167
Bsh1236I CGCG 1 cut(s) 151
Bsh1285I CGRYCG 1 cut(s) 170
BshFI GGCC 4 cut(s) 47, 169, 258, 360
BshVI ATCGAT 1 cut(s) 246
BsiEI CGRYCG 1 cut(s) 170
BsiSI CCGG 3 cut(s) 86, 336, 357
BsmAI GTCTC 1 cut(s) 113
BsmBI CGTCTC 1 cut(s) 113
BsnI GGCC 4 cut(s) 47, 169, 258, 360
Bsp143I GATC 3 cut(s) 136, 226, 370
Bsp19I CCATGG 1 cut(s) 158
BspACI CCGC 1 cut(s) 149
BspANI GGCC 4 cut(s) 47, 169, 258, 360
BspDI ATCGAT 1 cut(s) 246
BspFNI CGCG 1 cut(s) 151
BspLI GGNNCC 3 cut(s) 91, 272, 340
BspPI GGATC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 297
BsrI ACTGG 1 cut(s) 259
BssECI CCNNGG 2 cut(s) 158, 355
BssMI GATC 3 cut(s) 136, 226, 370
BssNI GRCGYC 2 cut(s) 106, 118
BssT1I CCWWGG 1 cut(s) 158
Bst6I CTCTTC 1 cut(s) 38
BstACI GRCGYC 2 cut(s) 106, 118
BstDSI CCRYGG 1 cut(s) 158
BstFNI CGCG 1 cut(s) 151
BstKTI GATC 3 cut(s) 139, 229, 373
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 3 cut(s) 136, 226, 370
BstMCI CGRYCG 1 cut(s) 170
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstSCI CCNGG 2 cut(s) 85, 355
BstSFI CTRYAG 1 cut(s) 202
BstUI CGCG 1 cut(s) 151
BstZI CGGCCG 1 cut(s) 167
Bsu15I ATCGAT 1 cut(s) 246
BsuRI GGCC 4 cut(s) 47, 169, 258, 360
BsuTUI ATCGAT 1 cut(s) 246
BtgI CCRYGG 1 cut(s) 158
ClaI ATCGAT 1 cut(s) 246
CseI GACGC 1 cut(s) 126
CviAII CATG 3 cut(s) 159, 214, 283
DpnI GATC 3 cut(s) 138, 228, 372
DpnII GATC 3 cut(s) 136, 226, 370
EaeI YGGCCR 3 cut(s) 167, 256, 358
EagI CGGCCG 1 cut(s) 167
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
EclXI CGGCCG 1 cut(s) 167
Eco130I CCWWGG 1 cut(s) 158
Eco52I CGGCCG 1 cut(s) 167
Eco57I CTGAAG 1 cut(s) 26
EcoT14I CCWWGG 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 158
Esp3I CGTCTC 1 cut(s) 113
FaeI CATG 3 cut(s) 162, 217, 286
FaiI YATR 5 cut(s) 160, 215, 268, 284, 345
FatI CATG 3 cut(s) 158, 213, 282
FblI GTMKAC 1 cut(s) 103
FspBI CTAG 1 cut(s) 376
HaeIII GGCC 4 cut(s) 47, 169, 258, 360
HapII CCGG 3 cut(s) 86, 336, 357
HgaI GACGC 1 cut(s) 126
Hin1I GRCGYC 2 cut(s) 106, 118
Hin1II CATG 3 cut(s) 162, 217, 286
HincII GTYRAC 1 cut(s) 104
HindII GTYRAC 1 cut(s) 104
HinfI GANTC 4 cut(s) 4, 172, 231, 239
HpaII CCGG 3 cut(s) 86, 336, 357
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 2 cut(s) 116, 313
Hpy8I GTNNAC 1 cut(s) 104
Hpy99I CGWCG 3 cut(s) 105, 108, 120
HpyAV CCTTC 5 cut(s) 23, 29, 35, 50, 87
HpyCH4IV ACGT 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpySE526I ACGT 1 cut(s) 106
Hsp92I GRCGYC 2 cut(s) 106, 118
Hsp92II CATG 3 cut(s) 162, 217, 286
Kzo9I GATC 3 cut(s) 136, 226, 370
LmnI GCTCC 2 cut(s) 276, 327
LpnPI CCDG 6 cut(s) 29, 99, 147, 272, 349, 370
LweI GCATC 1 cut(s) 340
MaeI CTAG 1 cut(s) 376
MaeII ACGT 1 cut(s) 106
MalI GATC 3 cut(s) 138, 228, 372
MboI GATC 3 cut(s) 136, 226, 370
MboII GAAGA 5 cut(s) 25, 167, 226, 298, 358
MlsI TGGCCA 1 cut(s) 258
MluNI TGGCCA 1 cut(s) 258
MlyI GAGTC 1 cut(s) 233
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 4 cut(s) 41, 62, 122, 154
Mox20I TGGCCA 1 cut(s) 258
MscI TGGCCA 1 cut(s) 258
Msp20I TGGCCA 1 cut(s) 258
MspI CCGG 3 cut(s) 86, 336, 357
MspR9I CCNGG 2 cut(s) 87, 357
MvnI CGCG 1 cut(s) 151
MwoI GCNNNNNNNGC 1 cut(s) 68
NciI CCSGG 2 cut(s) 87, 357
NcoI CCATGG 1 cut(s) 158
NdeII GATC 3 cut(s) 136, 226, 370
NlaIII CATG 3 cut(s) 162, 217, 286
NlaIV GGNNCC 3 cut(s) 91, 272, 340
PcsI WCGNNNNNNNCGW 2 cut(s) 112, 243
PfeI GAWTC 3 cut(s) 4, 172, 231
PfoI TCCNGGA 1 cut(s) 85
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
PspN4I GGNNCC 3 cut(s) 91, 272, 340
SalI GTCGAC 1 cut(s) 102
Sau3AI GATC 3 cut(s) 136, 226, 370
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 2 cut(s) 87, 357
SetI ASST 4 cut(s) 109, 136, 324, 344
SfaNI GCATC 1 cut(s) 340
SfcI CTRYAG 1 cut(s) 202
SgrDI CGTCGACG 1 cut(s) 102
SsiI CCGC 1 cut(s) 149
SspMI CTAG 1 cut(s) 376
StyD4I CCNGG 2 cut(s) 85, 355
StyI CCWWGG 1 cut(s) 158
TaiI ACGT 1 cut(s) 109
TaqI TCGA 7 cut(s) 103, 178, 229, 237, 246, 348, 369
TfiI GAWTC 3 cut(s) 4, 172, 231
TspDTI ATGAA 3 cut(s) 17, 299, 332
XmiI GTMKAC 1 cut(s) 103
XspI CTAG 1 cut(s) 376
ZraI GACGTC 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.