Prupe.8G133000_v2.0.a1

Kynurenine formamidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000645
Physical Location & Seq
Forward (+)
15484764 .. 15485506
743 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G133000.1

Sequence Viewer

Length: 324 bp
ATGAAGGCTTTGAATATTCCTAGAGGAGTACGTCGTGTGCTTTTCAGAACATCAAATACAGACAGGAAGCTTATGTGGAAGAAGGAATTTGACACAAGTTACGTTGGATTTATGAAGGATGGGGCAAAATGGTTGGTGGAGAACACAGACATCAAACTCGTAGGAGTTCCAACTCATCATGTTTTTCTAGAGCGCAGGGAGGTCAATCTTCTGGAGGGTTTAAAGCTTGATGGCGTTCCAGCAGGAATATACTCTGTTCATTGCTTGCCCTTAAGGTTGATTGGCGCTGATGGATCACCAACAAGATGCATTCTCATTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclase

Protein Analysis

108

Amino Acids

12.16

Weight (kDa)

9.79

Isoelectric Point (pI)

28.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000645)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44542 AT4G34180 AT4G35220
fragaria_vesca FvH4_2g05360 FvH4_2g05360 FvH4_2g05380 FvH4_2g05400
malus_domestica MD00G1024900.v1.1 MD05G1087600.v1.1
prunus_persica Prupe.8G132800_v2.0.a1 Prupe.8G132800_v2.0.a1 Prupe.8G132900_v2.0.a1 Prupe.8G133000_v2.0.a1 Prupe.8G133300_v2.0.a1 Prupe.8G133400_v2.0.a1
pyrus_communis pycom05g08710
rosa_chinensis RchiOBHm_Chr6g0255621 RchiOBHm_Chr6g0255631 RchiOBHm_Chr6g0255661 RchiOBHm_Chr6g0255671 RchiOBHm_Chr6g0255681 RchiOBHm_Chr6g0255711
rosa_laevigata RLG00000014820 RLG00000014821 RLG00000014822 RLG00000014826
rosa_multiflora Rmu_co8458743.1_g000001 Rmu_sc0001422.1_g000004 Rmu_sc0005014.1_g000014 Rmu_sc0010421.1_g000001 Rmu_sc0010421.1_g000005 Rmu_sc0030046.1_g000001 Rmu_sc0039760.1_g000001 Rmu_ssc0000136.1_g000001 Rmu_ssc0000136.1_g000015
rosa_roxburghii Rroxscaffold_7G00209750 Rroxscaffold_7G00209760 Rroxscaffold_7G00209780 Rroxscaffold_7G00209790 Rroxscaffold_7G00209800 Rroxscaffold_7G00209810 Rroxscaffold_7G00209820 Rroxscaffold_7G00209830 Rroxscaffold_7G00209840
rosa_rugosa Rorug05G0559900 Rorug05G0560000 Rorug05G0560200 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560400 Rorug05G0560500
rosa_samantha Rh4BG250600 Rh6AG078600 Rh6AG078700 Rh6BG070800 Rh6BG071000 Rh6BG071200 Rh6BG071300 Rh6BG071600 Rh6BG071700 Rh6CG069300 Rh6CG069400 Rh6CG069700 Rh6CG069800 Rh6CG069900 Rh6DG066300 Rh6DG066400 Rh6DG066800 Rh6DG066900 Rh6DG067100 Rh6DG372200
rosa_wichuraiana Rw2G024460 Rw6G006610 Rw6G006770 Rw6G006780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 301
AcsI RAATTY 1 cut(s) 86
AfaI GTAC 1 cut(s) 30
AflII CTTAAG 1 cut(s) 271
AgsI TTSAA 1 cut(s) 13
AluBI AGCT 2 cut(s) 70, 226
AluI AGCT 2 cut(s) 70, 226
AlwI GGATC 1 cut(s) 301
ApoI RAATTY 1 cut(s) 86
AspLEI GCGC 2 cut(s) 195, 287
AsuHPI GGTGA 1 cut(s) 288
BccI CCATC 3 cut(s) 113, 224, 284
BfaI CTAG 2 cut(s) 21, 188
BfoI RGCGCY 1 cut(s) 288
BfrI CTTAAG 1 cut(s) 271
BmsI GCATC 1 cut(s) 296
BpmI CTGGAG 1 cut(s) 233
Bse3DI GCAATG 1 cut(s) 259
BseGI GGATG 1 cut(s) 124
BseMI GCAATG 1 cut(s) 259
BseRI GAGGAG 1 cut(s) 39
BsmI GAATGC 1 cut(s) 309
Bsp143I GATC 1 cut(s) 293
BspPI GGATC 1 cut(s) 301
BspTI CTTAAG 1 cut(s) 271
BsrDI GCAATG 1 cut(s) 259
BssMI GATC 1 cut(s) 293
BstAFI CTTAAG 1 cut(s) 271
BstC8I GCNNGC 1 cut(s) 266
BstF5I GGATG 1 cut(s) 124
BstH2I RGCGCY 1 cut(s) 288
BstHHI GCGC 2 cut(s) 195, 287
BstKTI GATC 1 cut(s) 296
BstMBI GATC 1 cut(s) 293
BtsCI GGATG 1 cut(s) 124
Cac8I GCNNGC 1 cut(s) 266
CfoI GCGC 2 cut(s) 195, 287
Csp6I GTAC 1 cut(s) 29
CviAII CATG 1 cut(s) 179
CviJI RGCY 3 cut(s) 8, 70, 226
CviKI_1 RGCY 3 cut(s) 8, 70, 226
CviQI GTAC 1 cut(s) 29
DpnI GATC 1 cut(s) 295
DpnII GATC 1 cut(s) 293
DraI TTTAAA 1 cut(s) 222
EcoT22I ATGCAT 1 cut(s) 311
FaeI CATG 1 cut(s) 182
FaiI YATR 4 cut(s) 74, 113, 180, 250
FatI CATG 1 cut(s) 178
FokI GGATG 1 cut(s) 131
FspBI CTAG 2 cut(s) 21, 188
GlaI GCGC 2 cut(s) 194, 286
GsuI CTGGAG 1 cut(s) 233
HaeII RGCGCY 1 cut(s) 288
HhaI GCGC 2 cut(s) 195, 287
Hin1II CATG 1 cut(s) 182
Hin6I GCGC 2 cut(s) 193, 285
HinP1I GCGC 2 cut(s) 193, 285
HindIII AAGCTT 2 cut(s) 68, 224
HphI GGTGA 1 cut(s) 288
Hpy188I TCNGA 1 cut(s) 47
Hpy188III TCNNGA 2 cut(s) 188, 212
Hpy99I CGWCG 1 cut(s) 36
HpyAV CCTTC 2 cut(s) 76, 109
HpyCH4IV ACGT 2 cut(s) 31, 102
HpyCH4V TGCA 1 cut(s) 309
HpySE526I ACGT 2 cut(s) 31, 102
Hsp92II CATG 1 cut(s) 182
HspAI GCGC 2 cut(s) 193, 285
Kzo9I GATC 1 cut(s) 293
LpnPI CCDG 5 cut(s) 49, 181, 197, 228, 252
LweI GCATC 1 cut(s) 296
MaeI CTAG 2 cut(s) 21, 188
MaeII ACGT 2 cut(s) 31, 102
MaeIII GTNAC 1 cut(s) 98
MalI GATC 1 cut(s) 295
MboI GATC 1 cut(s) 293
MboII GAAGA 2 cut(s) 91, 200
MluCI AATT 1 cut(s) 86
MmeI TCCRAC 2 cut(s) 85, 194
MnlI CCTC 3 cut(s) 17, 193, 208
Mph1103I ATGCAT 1 cut(s) 311
MseI TTAA 3 cut(s) 221, 272, 318
MspCI CTTAAG 1 cut(s) 271
Mva1269I GAATGC 1 cut(s) 309
NdeII GATC 1 cut(s) 293
NlaIII CATG 1 cut(s) 182
NsiI ATGCAT 1 cut(s) 311
PctI GAATGC 1 cut(s) 309
PsrI GAACNNNNNNTAC 2 cut(s) 40, 72
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
SaqAI TTAA 3 cut(s) 221, 272, 318
Sau3AI GATC 1 cut(s) 293
SetI ASST 6 cut(s) 34, 72, 105, 204, 228, 278
SfaNI GCATC 1 cut(s) 296
SmlI CTYRAG 1 cut(s) 271
SmoI CTYRAG 1 cut(s) 271
Sse9I AATT 1 cut(s) 86
SspI AATATT 1 cut(s) 16
SspMI CTAG 2 cut(s) 21, 188
TaiI ACGT 2 cut(s) 34, 105
TasI AATT 1 cut(s) 86
Tru1I TTAA 3 cut(s) 221, 272, 318
Tru9I TTAA 3 cut(s) 221, 272, 318
TspDTI ATGAA 3 cut(s) 17, 128, 248
Vha464I CTTAAG 1 cut(s) 271
XapI RAATTY 1 cut(s) 86
XbaI TCTAGA 1 cut(s) 187
XspI CTAG 2 cut(s) 21, 188
Zsp2I ATGCAT 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.