Rh6AG078700

Kynurenine formamidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000645
Physical Location & Seq
Reverse (-)
11466790 .. 11474972
8183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG078700.1

Sequence Viewer

Length: 552 bp
ATGAATAACACCCCCCTACTCCACCACCTCGTCCTTCTTCTTCTGCTACCATGCACCCTAGTATACACCATCACCACCGTCACTTCATCCTCCGCCAACCAGGCTTACCCCACCCTCACCGAGGACTGCTTAGTGTCCGGTGAGGATATCCCTGTGCCCATACGGAGGGAGGTGTATGATAACGGTCGAATATTTGACATCAGCCACAGTGTCCACTCCGGCGCCCATGTGGACGCGCCGGGTCATGTCTTCGACCATTACTACGATGCTGGCTTTGATGTTGATGCGCTTGACCTCGAATTCTTAAATGGTCCTGCACTGGTGGTTGATGTTCCGAGGAACAAGAACATAACTGGGCTTGATTACTTAAACGTCGCAGCTTCTATTGATGTATTACCAGTTCATTATGCGTTTCTACAAGGCCGGGAGATGGTTCTTGTTGAGGGTTTAAAGCTCGATGGAGTTCCAGCAGGAATATATTCTGTCCATTGTTTGCCTTTAAGGTTGATCAGTTCTGATGGATCACCAGCAAGATGCATCCTCATCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclase

Protein Analysis

183

Amino Acids

19.94

Weight (kDa)

5.0

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclase PF04199 49 - 114 8.3e-08 Putative cyclase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000645)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44542 AT4G34180 AT4G35220
fragaria_vesca FvH4_2g05360 FvH4_2g05360 FvH4_2g05380 FvH4_2g05400
malus_domestica MD00G1024900.v1.1 MD05G1087600.v1.1
prunus_persica Prupe.8G132800_v2.0.a1 Prupe.8G132800_v2.0.a1 Prupe.8G132900_v2.0.a1 Prupe.8G133000_v2.0.a1 Prupe.8G133300_v2.0.a1 Prupe.8G133400_v2.0.a1
pyrus_communis pycom05g08710
rosa_chinensis RchiOBHm_Chr6g0255621 RchiOBHm_Chr6g0255631 RchiOBHm_Chr6g0255661 RchiOBHm_Chr6g0255671 RchiOBHm_Chr6g0255681 RchiOBHm_Chr6g0255711
rosa_laevigata RLG00000014820 RLG00000014821 RLG00000014822 RLG00000014826
rosa_multiflora Rmu_co8458743.1_g000001 Rmu_sc0001422.1_g000004 Rmu_sc0005014.1_g000014 Rmu_sc0010421.1_g000001 Rmu_sc0010421.1_g000005 Rmu_sc0030046.1_g000001 Rmu_sc0039760.1_g000001 Rmu_ssc0000136.1_g000001 Rmu_ssc0000136.1_g000015
rosa_roxburghii Rroxscaffold_7G00209750 Rroxscaffold_7G00209760 Rroxscaffold_7G00209780 Rroxscaffold_7G00209790 Rroxscaffold_7G00209800 Rroxscaffold_7G00209810 Rroxscaffold_7G00209820 Rroxscaffold_7G00209830 Rroxscaffold_7G00209840
rosa_rugosa Rorug05G0559900 Rorug05G0560000 Rorug05G0560200 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560400 Rorug05G0560500
rosa_samantha Rh4BG250600 Rh6AG078600 Rh6AG078700 Rh6BG070800 Rh6BG071000 Rh6BG071200 Rh6BG071300 Rh6BG071600 Rh6BG071700 Rh6CG069300 Rh6CG069400 Rh6CG069700 Rh6CG069800 Rh6CG069900 Rh6DG066300 Rh6DG066400 Rh6DG066800 Rh6DG066900 Rh6DG067100 Rh6DG372200
rosa_wichuraiana Rw2G024460 Rw6G006610 Rw6G006770 Rw6G006780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 221
AccI GTMKAC 1 cut(s) 63
AccII CGCG 1 cut(s) 236
AciI CCGC 1 cut(s) 93
AclWI GGATC 1 cut(s) 529
AcsI RAATTY 1 cut(s) 299
AcyI GRCGYC 1 cut(s) 222
AfiI CCNNNNNNNGG 3 cut(s) 121, 165, 430
AjnI CCWGG 1 cut(s) 99
AluBI AGCT 2 cut(s) 380, 454
AluI AGCT 2 cut(s) 380, 454
AlwI GGATC 1 cut(s) 529
AoxI GGCC 1 cut(s) 421
ApeKI GCWGC 1 cut(s) 377
ApoI RAATTY 1 cut(s) 299
Asp700I GAANNNNTTC 1 cut(s) 478
AspLEI GCGC 3 cut(s) 224, 238, 289
AspS9I GGNCC 1 cut(s) 311
AsuC2I CCSGG 2 cut(s) 240, 425
AsuHPI GGTGA 4 cut(s) 64, 109, 152, 516
AvaII GGWCC 1 cut(s) 311
BaeGI GKGCMC 1 cut(s) 159
BanI GGYRCC 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 241
BbvI GCAGC 1 cut(s) 389
BccI CCATC 4 cut(s) 77, 424, 452, 512
BciT130I CCWGG 1 cut(s) 101
BclI TGATCA 1 cut(s) 507
BcnI CCSGG 2 cut(s) 240, 425
BfaI CTAG 1 cut(s) 59
BfoI RGCGCY 1 cut(s) 225
BglI GCCNNNNNGGC 1 cut(s) 101
BisI GCNGC 1 cut(s) 378
BlsI GCNGC 1 cut(s) 379
Bme1390I CCNGG 3 cut(s) 101, 240, 425
Bme18I GGWCC 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 1 cut(s) 223
BmrFI CCNGG 3 cut(s) 101, 240, 425
BmrI ACTGGG 1 cut(s) 363
BmsI GCATC 4 cut(s) 256, 274, 524, 546
BmuI ACTGGG 1 cut(s) 363
BpiI GAAGAC 1 cut(s) 241
BpuMI CCSGG 2 cut(s) 240, 425
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 120, 335
BsaWI WCCGGW 1 cut(s) 137
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 165, 430
Bse1I ACTGG 3 cut(s) 324, 358, 398
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 2 cut(s) 120, 335
BseGI GGATG 2 cut(s) 86, 537
BseLI CCNNNNNNNGG 3 cut(s) 121, 165, 430
BseNI ACTGG 3 cut(s) 324, 358, 398
BseSI GKGCMC 1 cut(s) 159
BseXI GCAGC 1 cut(s) 389
BsgI GTGCAG 1 cut(s) 300
Bsh1236I CGCG 1 cut(s) 236
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 1 cut(s) 423
BshNI GGYRCC 1 cut(s) 221
BsiEI CGRYCG 1 cut(s) 187
BsiSI CCGG 4 cut(s) 138, 219, 239, 424
BslI CCNNNNNNNGG 3 cut(s) 121, 165, 430
BsnI GGCC 1 cut(s) 423
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 2 cut(s) 507, 521
BspACI CCGC 1 cut(s) 93
BspANI GGCC 1 cut(s) 423
BspFNI CGCG 1 cut(s) 236
BspLI GGNNCC 1 cut(s) 223
BspPI GGATC 1 cut(s) 529
BspT107I GGYRCC 1 cut(s) 221
BsrI ACTGG 3 cut(s) 324, 358, 398
BssECI CCNNGG 2 cut(s) 120, 335
BssMI GATC 2 cut(s) 507, 521
BssNAI GTATAC 1 cut(s) 64
BssNI GRCGYC 1 cut(s) 222
Bst1107I GTATAC 1 cut(s) 64
Bst2UI CCWGG 1 cut(s) 101
Bst4CI ACNGT 3 cut(s) 79, 185, 209
BstACI GRCGYC 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 271
BstDEI CTNAG 1 cut(s) 130
BstENI CCTNNNNNAGG 1 cut(s) 119
BstF5I GGATG 2 cut(s) 86, 537
BstFNI CGCG 1 cut(s) 236
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 3 cut(s) 224, 238, 289
BstKTI GATC 2 cut(s) 510, 524
BstMBI GATC 2 cut(s) 507, 521
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 3 cut(s) 99, 238, 423
BstSLI GKGCMC 1 cut(s) 159
BstUI CGCG 1 cut(s) 236
BstV1I GCAGC 1 cut(s) 389
BstV2I GAAGAC 1 cut(s) 241
BstZ17I GTATAC 1 cut(s) 64
BsuRI GGCC 1 cut(s) 423
BtsCI GGATG 2 cut(s) 86, 537
BtsIMutI CAGTG 2 cut(s) 214, 317
Cac8I GCNNGC 1 cut(s) 271
CfoI GCGC 3 cut(s) 224, 238, 289
Cfr13I GGNCC 1 cut(s) 311
CseI GACGC 1 cut(s) 242
CviAII CATG 3 cut(s) 51, 227, 245
CviJI RGCY 7 cut(s) 104, 204, 273, 358, 380, 423, 454
CviKI_1 RGCY 7 cut(s) 104, 204, 273, 358, 380, 423, 454
DdeI CTNAG 1 cut(s) 130
DinI GGCGCC 1 cut(s) 223
DpnI GATC 2 cut(s) 509, 523
DpnII GATC 2 cut(s) 507, 521
DraI TTTAAA 1 cut(s) 450
EciI GGCGGA 1 cut(s) 82
Eco32I GATATC 1 cut(s) 148
Eco47I GGWCC 1 cut(s) 311
EcoNI CCTNNNNNAGG 1 cut(s) 119
EcoRI GAATTC 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 99
EcoRV GATATC 1 cut(s) 148
EcoT22I ATGCAT 1 cut(s) 539
EgeI GGCGCC 1 cut(s) 223
EheI GGCGCC 1 cut(s) 223
FaeI CATG 3 cut(s) 54, 230, 248
FaiI YATR 9 cut(s) 52, 64, 161, 177, 228, 246, 350, 408, 478
FatI CATG 3 cut(s) 50, 226, 244
FbaI TGATCA 1 cut(s) 507
FblI GTMKAC 1 cut(s) 63
Fnu4HI GCNGC 1 cut(s) 378
FokI GGATG 2 cut(s) 73, 524
Fsp4HI GCNGC 1 cut(s) 378
FspBI CTAG 1 cut(s) 59
GlaI GCGC 3 cut(s) 223, 237, 288
GluI GCNGC 1 cut(s) 378
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 1 cut(s) 423
HapII CCGG 4 cut(s) 138, 219, 239, 424
HgaI GACGC 1 cut(s) 242
HhaI GCGC 3 cut(s) 224, 238, 289
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 3 cut(s) 54, 230, 248
Hin6I GCGC 3 cut(s) 222, 236, 287
HinP1I GCGC 3 cut(s) 222, 236, 287
HpaII CCGG 4 cut(s) 138, 219, 239, 424
HphI GGTGA 4 cut(s) 64, 109, 152, 516
Hpy166II GTNNAC 3 cut(s) 64, 214, 232
Hpy188I TCNGA 2 cut(s) 336, 517
Hpy8I GTNNAC 3 cut(s) 64, 214, 232
Hpy99I CGWCG 1 cut(s) 377
HpyAV CCTTC 1 cut(s) 44
HpyCH4III ACNGT 3 cut(s) 79, 185, 209
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 3 cut(s) 54, 317, 537
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 1 cut(s) 130
HpySE526I ACGT 1 cut(s) 372
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 3 cut(s) 54, 230, 248
HspAI GCGC 3 cut(s) 222, 236, 287
KasI GGCGCC 1 cut(s) 221
Ksp22I TGATCA 1 cut(s) 507
Kzo9I GATC 2 cut(s) 507, 521
Lsp1109I GCAGC 1 cut(s) 389
LweI GCATC 4 cut(s) 256, 274, 524, 546
MaeI CTAG 1 cut(s) 59
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 1 cut(s) 79
MalI GATC 2 cut(s) 509, 523
MboI GATC 2 cut(s) 507, 521
MboII GAAGA 3 cut(s) 29, 32, 241
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 1 cut(s) 299
Mly113I GGCGCC 1 cut(s) 222
Mph1103I ATGCAT 1 cut(s) 539
MroXI GAANNNNTTC 1 cut(s) 478
MseI TTAA 4 cut(s) 305, 368, 449, 500
MspI CCGG 4 cut(s) 138, 219, 239, 424
MspR9I CCNGG 3 cut(s) 101, 240, 425
MvaI CCWGG 1 cut(s) 101
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 1 cut(s) 101
NarI GGCGCC 1 cut(s) 222
NciI CCSGG 2 cut(s) 240, 425
NdeII GATC 2 cut(s) 507, 521
NlaIII CATG 3 cut(s) 54, 230, 248
NlaIV GGNNCC 1 cut(s) 223
NmuCI GTSAC 1 cut(s) 79
NsiI ATGCAT 1 cut(s) 539
PdmI GAANNNNTTC 1 cut(s) 478
PkrI GCNGC 1 cut(s) 379
PluTI GGCGCC 1 cut(s) 225
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 223
PspPI GGNCC 1 cut(s) 311
PsrI GAACNNNNNNTAC 2 cut(s) 384, 416
SaqAI TTAA 4 cut(s) 305, 368, 449, 500
SatI GCNGC 1 cut(s) 378
Sau3AI GATC 2 cut(s) 507, 521
Sau96I GGNCC 1 cut(s) 311
ScrFI CCNGG 3 cut(s) 101, 240, 425
SduI GDGCHC 1 cut(s) 159
SetI ASST 7 cut(s) 30, 174, 297, 375, 382, 456, 506
SfaNI GCATC 4 cut(s) 256, 274, 524, 546
SfoI GGCGCC 1 cut(s) 223
SinI GGWCC 1 cut(s) 311
Sse9I AATT 1 cut(s) 299
SsiI CCGC 1 cut(s) 93
SspDI GGCGCC 1 cut(s) 221
SspI AATATT 1 cut(s) 192
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 3 cut(s) 99, 238, 423
TaaI ACNGT 3 cut(s) 79, 185, 209
TaiI ACGT 1 cut(s) 375
TaqI TCGA 4 cut(s) 187, 252, 297, 456
TasI AATT 1 cut(s) 299
Tru1I TTAA 4 cut(s) 305, 368, 449, 500
Tru9I TTAA 4 cut(s) 305, 368, 449, 500
TscAI CASTG 2 cut(s) 214, 324
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 1 cut(s) 377
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 3 cut(s) 17, 75, 392
TspGWI ACGGA 1 cut(s) 178
TspRI CASTG 2 cut(s) 214, 324
VpaK11BI GGWCC 1 cut(s) 311
XagI CCTNNNNNAGG 1 cut(s) 119
XapI RAATTY 1 cut(s) 299
XmiI GTMKAC 1 cut(s) 63
XmnI GAANNNNTTC 1 cut(s) 478
XspI CTAG 1 cut(s) 59
Zsp2I ATGCAT 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.