Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000645

Physical Location & Seq

Genomic Coordinates Forward (+)

16752571 .. 16754478

Gene Structure 1908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G35220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCCGTTCCTCCATTATTCTTCCTCCTCACACTCCTCTCTCTCCCTTCTCTTCTTATCTCCGCCGGTGCTTCCAATGCCTATCCTTCTATTCCCGGAACCGCTCCTATCGACGGAGGTTTCACCGATGAACTTAAACCCATTCGCCGTGAAGTCTACGGGAATGGCAAAATCTATGACATCAGTCACCGTTACACTCCGGAGATGCCGTCGTGGGACTCATCGGAAGGAATCGGACGGTTCCTATGGTTAGCTGCGAGTATGAAGAACGGATCTCTTGCTAATAACTCTGAAATGAAGATTCCCACGCACACTGGTACTCATGTTGATTCACCTGGTCACGTCTATGACAAGTATTACGATGCTGGCTTTGATGTTGACTCGCTTGATCTTCAAGTCCTCAATGGTCTTGCGTTGTTGGTTGATGTTCCAAAGGATAAGAACATTACTGCTGAAGTGATGAAATCTCTTCACATTCCAAAAGGAGTTAGTCGTGTGCTTTTCAGAACATTGAACACTGACAGGCGTCTTATGTTCAAGAAAGAATTTGATACAAGCTATGTCGGATTCATGAAGGATGGTGCGCAATGGTTGGTAGACAACACAGACATCAAACTTGTTGGGATTGATTATCTATCAGTAGCTGCATATGATGATCTTATTCCATCCCACCTAGTATTCCTAAAAGACCGGGAGACTATACTCGTGGAGGGGTTGAAGCTGGATGGTGTGAAGGCAGGACTCTACTCTGTCCATTGCTTACCTCTAAGACTGGTTGGAGCAGAAGGGTCTCCAATTCGTTGCATCCTCATCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0010941 GO:0012505 GO:0030312 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0060548 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclase

Protein Analysis

272

Amino Acids

29.99

Weight (kDa)

5.64

Isoelectric Point (pI)

30.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclase	PF04199	59 - 214	1.1e-20	Putative cyclase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44542 AT4G34180 AT4G35220
fragaria_vesca	FvH4_2g05360 FvH4_2g05360 FvH4_2g05380 FvH4_2g05400
malus_domestica	MD00G1024900.v1.1 MD05G1087600.v1.1
prunus_persica	Prupe.8G132800_v2.0.a1 Prupe.8G132800_v2.0.a1 Prupe.8G132900_v2.0.a1 Prupe.8G133000_v2.0.a1 Prupe.8G133300_v2.0.a1 Prupe.8G133400_v2.0.a1
pyrus_communis	pycom05g08710
rosa_chinensis	RchiOBHm_Chr6g0255621 RchiOBHm_Chr6g0255631 RchiOBHm_Chr6g0255661 RchiOBHm_Chr6g0255671 RchiOBHm_Chr6g0255681 RchiOBHm_Chr6g0255711
rosa_laevigata	RLG00000014820 RLG00000014821 RLG00000014822 RLG00000014826
rosa_multiflora	Rmu_co8458743.1_g000001 Rmu_sc0001422.1_g000004 Rmu_sc0005014.1_g000014 Rmu_sc0010421.1_g000001 Rmu_sc0010421.1_g000005 Rmu_sc0030046.1_g000001 Rmu_sc0039760.1_g000001 Rmu_ssc0000136.1_g000001 Rmu_ssc0000136.1_g000015
rosa_roxburghii	Rroxscaffold_7G00209750 Rroxscaffold_7G00209760 Rroxscaffold_7G00209780 Rroxscaffold_7G00209790 Rroxscaffold_7G00209800 Rroxscaffold_7G00209810 Rroxscaffold_7G00209820 Rroxscaffold_7G00209830 Rroxscaffold_7G00209840
rosa_rugosa	Rorug05G0559900 Rorug05G0560000 Rorug05G0560200 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560400 Rorug05G0560500
rosa_samantha	Rh4BG250600 Rh6AG078600 Rh6AG078700 Rh6BG070800 Rh6BG071000 Rh6BG071200 Rh6BG071300 Rh6BG071600 Rh6BG071700 Rh6CG069300 Rh6CG069400 Rh6CG069700 Rh6CG069800 Rh6CG069900 Rh6DG066300 Rh6DG066400 Rh6DG066800 Rh6DG066900 Rh6DG067100 Rh6DG372200
rosa_wichuraiana	Rw2G024460 Rw6G006610 Rw6G006770 Rw6G006780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	585
AccBSI	CCGCTC	1 cut(s)	104
AccI	GTMKAC	2 cut(s)	156, 597
AccIII	TCCGGA	1 cut(s)	199
AciI	CCGC	2 cut(s)	63, 102
AclWI	GGATC	1 cut(s)	280
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	545
AcuI	CTGAAG	1 cut(s)	474
AcyI	GRCGYC	1 cut(s)	526
AfaI	GTAC	1 cut(s)	319
AfiI	CCNNNNNNNGG	1 cut(s)	113
AgsI	TTSAA	4 cut(s)	395, 514, 538, 718
AjiI	CACGTC	1 cut(s)	343
AjnI	CCWGG	1 cut(s)	334
AluBI	AGCT	4 cut(s)	254, 558, 644, 721
AluI	AGCT	4 cut(s)	254, 558, 644, 721
Alw26I	GTCTC	2 cut(s)	689, 795
AlwI	GGATC	1 cut(s)	280
AlwNI	CAGNNNCTG	1 cut(s)	644
Aor13HI	TCCGGA	1 cut(s)	199
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	254, 644
ApoI	RAATTY	1 cut(s)	545
AspLEI	GCGC	1 cut(s)	586
AsuC2I	CCSGG	2 cut(s)	96, 692
AsuHPI	GGTGA	3 cut(s)	115, 179, 324
BaeI	ACNNNNGTAYC	2 cut(s)	309, 342
BauI	CACGAG	1 cut(s)	704
BbvI	GCAGC	2 cut(s)	241, 631
BccI	CCATC	3 cut(s)	572, 673, 719
BceAI	ACGGC	2 cut(s)	132, 193
BcgI	CGANNNNNNTGC	1 cut(s)	793
BciT130I	CCWGG	1 cut(s)	336
BcnI	CCSGG	2 cut(s)	96, 692
BcoDI	GTCTC	2 cut(s)	689, 795
BfaI	CTAG	1 cut(s)	674
BisI	GCNGC	2 cut(s)	255, 645
BlsI	GCNGC	2 cut(s)	256, 646
Bme1390I	CCNGG	3 cut(s)	96, 336, 692
BmgBI	CACGTC	1 cut(s)	343
BmiI	GGNNCC	2 cut(s)	100, 242
BmrFI	CCNGG	3 cut(s)	96, 336, 692
BmsI	GCATC	3 cut(s)	195, 352, 813
BoxI	GACNNNNGTC	2 cut(s)	183, 525
BpuMI	CCSGG	2 cut(s)	96, 692
Bsa29I	ATCGAT	1 cut(s)	813
BsaHI	GRCGYC	1 cut(s)	526
BsaI	GGTCTC	1 cut(s)	795
BsaWI	WCCGGW	1 cut(s)	199
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	2 cut(s)	319, 777
Bse3DI	GCAATG	2 cut(s)	593, 754
BseAI	TCCGGA	1 cut(s)	199
BseBI	CCWGG	1 cut(s)	336
BseCI	ATCGAT	1 cut(s)	813
BseGI	GGATG	4 cut(s)	583, 665, 730, 804
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseMI	GCAATG	2 cut(s)	593, 754
BseNI	ACTGG	2 cut(s)	319, 777
BseRI	GAGGAG	2 cut(s)	17, 26
BseXI	GCAGC	2 cut(s)	241, 631
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	813
BsiSI	CCGG	4 cut(s)	66, 96, 200, 691
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmAI	GTCTC	2 cut(s)	689, 795
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	795
Bsp13I	TCCGGA	1 cut(s)	199
Bsp143I	GATC	3 cut(s)	272, 388, 655
BspACI	CCGC	2 cut(s)	63, 102
BspANI	GGCC	1 cut(s)	5
BspDI	ATCGAT	1 cut(s)	813
BspEI	TCCGGA	1 cut(s)	199
BspHI	TCATGA	1 cut(s)	570
BspLI	GGNNCC	2 cut(s)	100, 242
BspPI	GGATC	1 cut(s)	280
BspTNI	GGTCTC	1 cut(s)	795
BsrBI	CCGCTC	1 cut(s)	104
BsrDI	GCAATG	2 cut(s)	593, 754
BsrFI	RCCGGY	1 cut(s)	65
BsrI	ACTGG	2 cut(s)	319, 777
BssAI	RCCGGY	1 cut(s)	65
BssMI	GATC	3 cut(s)	272, 388, 655
BssNI	GRCGYC	1 cut(s)	526
BssSI	CACGAG	1 cut(s)	704
Bst2BI	CACGAG	1 cut(s)	704
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	2 cut(s)	191, 240
Bst6I	CTCTTC	2 cut(s)	57, 474
BstACI	GRCGYC	1 cut(s)	526
BstC8I	GCNNGC	1 cut(s)	367
BstDEI	CTNAG	1 cut(s)	767
BstF5I	GGATG	4 cut(s)	583, 665, 730, 804
BstHHI	GCGC	1 cut(s)	586
BstKTI	GATC	3 cut(s)	275, 391, 658
BstMAI	GTCTC	2 cut(s)	689, 795
BstMBI	GATC	3 cut(s)	272, 388, 655
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	336
BstPAI	GACNNNNGTC	2 cut(s)	183, 525
BstSCI	CCNGG	3 cut(s)	94, 334, 690
BstV1I	GCAGC	2 cut(s)	241, 631
BstX2I	RGATCY	1 cut(s)	272
BstYI	RGATCY	1 cut(s)	272
Bsu15I	ATCGAT	1 cut(s)	813
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	813
BtrI	CACGTC	1 cut(s)	343
BtsCI	GGATG	4 cut(s)	583, 665, 730, 804
BtsIMutI	CAGTG	2 cut(s)	312, 516
Cac8I	GCNNGC	1 cut(s)	367
CaiI	CAGNNNCTG	1 cut(s)	644
CciI	TCATGA	1 cut(s)	570
CfoI	GCGC	1 cut(s)	586
Cfr10I	RCCGGY	1 cut(s)	65
ClaI	ATCGAT	1 cut(s)	813
CseI	GACGC	1 cut(s)	515
CsiI	ACCWGGT	1 cut(s)	334
Csp6I	GTAC	1 cut(s)	318
CviAII	CATG	2 cut(s)	323, 571
CviJI	RGCY	6 cut(s)	5, 254, 369, 558, 644, 721
CviKI_1	RGCY	6 cut(s)	5, 254, 369, 558, 644, 721
CviQI	GTAC	1 cut(s)	318
DdeI	CTNAG	1 cut(s)	767
DpnI	GATC	3 cut(s)	274, 390, 657
DpnII	GATC	3 cut(s)	272, 388, 655
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	57, 474
EarI	CTCTTC	2 cut(s)	57, 474
EciI	GGCGGA	1 cut(s)	52
Eco31I	GGTCTC	1 cut(s)	795
Eco57I	CTGAAG	1 cut(s)	474
EcoRII	CCWGG	1 cut(s)	334
FaeI	CATG	2 cut(s)	326, 574
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	2 cut(s)	322, 570
FauNDI	CATATG	1 cut(s)	649
FblI	GTMKAC	2 cut(s)	156, 597
Fnu4HI	GCNGC	2 cut(s)	255, 645
FokI	GGATG	4 cut(s)	590, 652, 737, 791
Fsp4HI	GCNGC	2 cut(s)	255, 645
FspBI	CTAG	1 cut(s)	674
FspI	TGCGCA	1 cut(s)	585
GlaI	GCGC	1 cut(s)	585
GluI	GCNGC	2 cut(s)	255, 645
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	4 cut(s)	66, 96, 200, 691
HgaI	GACGC	1 cut(s)	515
HhaI	GCGC	1 cut(s)	586
Hin1I	GRCGYC	1 cut(s)	526
Hin1II	CATG	2 cut(s)	326, 574
Hin6I	GCGC	1 cut(s)	584
HinP1I	GCGC	1 cut(s)	584
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HinfI	GANTC	7 cut(s)	218, 231, 301, 329, 380, 567, 741
HpaII	CCGG	4 cut(s)	66, 96, 200, 691
HphI	GGTGA	3 cut(s)	115, 179, 324
Hpy166II	GTNNAC	3 cut(s)	157, 379, 598
Hpy188I	TCNGA	5 cut(s)	226, 236, 292, 506, 566
Hpy188III	TCNNGA	3 cut(s)	200, 538, 571
Hpy8I	GTNNAC	3 cut(s)	157, 379, 598
Hpy99I	CGWCG	2 cut(s)	116, 214
HpyAV	CCTTC	6 cut(s)	57, 96, 221, 568, 727, 779
HpyCH4III	ACNGT	2 cut(s)	191, 240
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	2 cut(s)	647, 804
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	767
HpySE526I	ACGT	1 cut(s)	342
Hsp92I	GRCGYC	1 cut(s)	526
Hsp92II	CATG	2 cut(s)	326, 574
HspAI	GCGC	1 cut(s)	584
Kpn2I	TCCGGA	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	272, 388, 655
LmnI	GCTCC	2 cut(s)	109, 779
Lsp1109I	GCAGC	2 cut(s)	241, 631
LweI	GCATC	3 cut(s)	195, 352, 813
MabI	ACCWGGT	1 cut(s)	334
MaeI	CTAG	1 cut(s)	674
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	3 cut(s)	185, 191, 338
MalI	GATC	3 cut(s)	274, 390, 657
MbiI	CCGCTC	1 cut(s)	104
MboI	GATC	3 cut(s)	272, 388, 655
MboII	GAAGA	6 cut(s)	13, 44, 277, 310, 383, 461
MflI	RGATCY	1 cut(s)	272
MluCI	AATT	2 cut(s)	545, 795
MlyI	GAGTC	3 cut(s)	212, 374, 735
MmeI	TCCRAC	2 cut(s)	544, 757
MnlI	CCTC	9 cut(s)	21, 35, 38, 47, 110, 410, 703, 774, 818
MroI	TCCGGA	1 cut(s)	199
MseI	TTAA	1 cut(s)	135
MslI	CAYNNNNRTG	1 cut(s)	345
MspI	CCGG	4 cut(s)	66, 96, 200, 691
MspR9I	CCNGG	3 cut(s)	96, 336, 692
MvaI	CCWGG	1 cut(s)	336
MwoI	GCNNNNNNNGC	1 cut(s)	77
NciI	CCSGG	2 cut(s)	96, 692
NdeI	CATATG	1 cut(s)	649
NdeII	GATC	3 cut(s)	272, 388, 655
NlaIII	CATG	2 cut(s)	326, 574
NlaIV	GGNNCC	2 cut(s)	100, 242
NmuCI	GTSAC	2 cut(s)	185, 338
NsbI	TGCGCA	1 cut(s)	585
PagI	TCATGA	1 cut(s)	570
PfeI	GAWTC	4 cut(s)	231, 301, 329, 567
PfoI	TCCNGGA	1 cut(s)	94
PkrI	GCNGC	2 cut(s)	256, 646
PleI	GAGTC	3 cut(s)	212, 374, 735
PpsI	GAGTC	3 cut(s)	212, 374, 735
PshAI	GACNNNNGTC	2 cut(s)	183, 525
Psp6I	CCWGG	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	334
PspN4I	GGNNCC	2 cut(s)	100, 242
PstNI	CAGNNNCTG	1 cut(s)	644
PsuI	RGATCY	1 cut(s)	272
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
RseI	CAYNNNNRTG	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	2 cut(s)	255, 645
Sau3AI	GATC	3 cut(s)	272, 388, 655
SchI	GAGTC	3 cut(s)	212, 374, 735
ScrFI	CCNGG	3 cut(s)	96, 336, 692
SetI	ASST	9 cut(s)	121, 256, 337, 345, 560, 646, 675, 723, 766
SexAI	ACCWGGT	1 cut(s)	334
SfaNI	GCATC	3 cut(s)	195, 352, 813
SgrAI	CRCCGGYG	1 cut(s)	65
SmiMI	CAYNNNNRTG	1 cut(s)	345
Sse9I	AATT	2 cut(s)	545, 795
SsiI	CCGC	2 cut(s)	63, 102
SspMI	CTAG	1 cut(s)	674
StyD4I	CCNGG	3 cut(s)	94, 334, 690
TaaI	ACNGT	2 cut(s)	191, 240
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	2 cut(s)	111, 813
TasI	AATT	2 cut(s)	545, 795
TfiI	GAWTC	4 cut(s)	231, 301, 329, 567
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	2 cut(s)	319, 523
TseFI	GTSAC	2 cut(s)	185, 338
TseI	GCWGC	2 cut(s)	254, 644
Tsp45I	GTSAC	2 cut(s)	185, 338
TspDTI	ATGAA	6 cut(s)	144, 278, 311, 476, 559, 587
TspGWI	ACGGA	2 cut(s)	129, 285
TspRI	CASTG	2 cut(s)	319, 523
XapI	RAATTY	1 cut(s)	545
XmiI	GTMKAC	2 cut(s)	156, 597
XspI	CTAG	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.