Rorug05G0560000

Kynurenine formamidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000645
Physical Location & Seq
Forward (+)
74998346 .. 74999162
817 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0560000.1

Sequence Viewer

Length: 423 bp
ATGGAAATGAAGAAGATTGCCTTCGTCGTCCTTGTTGCCGCCATCTGCGTGACCGCAGTCATGGCCGCAAAGGAACAGCCAAAGCCGACAGTATTCTATCCACCCCCCCCACAGAAAGCCGACTCCCCGAAATCTGGTGCCCCTGCCCCGGCTCCTAACAGTGGCAAAGGCTCCCATGCACCCACTCCTACTCCCTCCGGAGCTAAACACTCTTCCGCTGAGGCTCCTACCACCTCTTCTAGCGGGGATTCTACCACCTCTAGCTCGGAAGATTCTACCACCTCTACTTCCGCTAGCTCTACCTCTACTTCCGATAGCTCTACCACCGGGGCTCCTGCACCTGCACATTCCTCCGCCAACACCGTAGTTGGGTCCTTGGTCGGAGCTTCACTCGTGTCCTTCTTGGCCCTTTACATGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclase

Protein Analysis

140

Amino Acids

13.78

Weight (kDa)

6.81

Isoelectric Point (pI)

54.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000645)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44542 AT4G34180 AT4G35220
fragaria_vesca FvH4_2g05360 FvH4_2g05360 FvH4_2g05380 FvH4_2g05400
malus_domestica MD00G1024900.v1.1 MD05G1087600.v1.1
prunus_persica Prupe.8G132800_v2.0.a1 Prupe.8G132800_v2.0.a1 Prupe.8G132900_v2.0.a1 Prupe.8G133000_v2.0.a1 Prupe.8G133300_v2.0.a1 Prupe.8G133400_v2.0.a1
pyrus_communis pycom05g08710
rosa_chinensis RchiOBHm_Chr6g0255621 RchiOBHm_Chr6g0255631 RchiOBHm_Chr6g0255661 RchiOBHm_Chr6g0255671 RchiOBHm_Chr6g0255681 RchiOBHm_Chr6g0255711
rosa_laevigata RLG00000014820 RLG00000014821 RLG00000014822 RLG00000014826
rosa_multiflora Rmu_co8458743.1_g000001 Rmu_sc0001422.1_g000004 Rmu_sc0005014.1_g000014 Rmu_sc0010421.1_g000001 Rmu_sc0010421.1_g000005 Rmu_sc0030046.1_g000001 Rmu_sc0039760.1_g000001 Rmu_ssc0000136.1_g000001 Rmu_ssc0000136.1_g000015
rosa_roxburghii Rroxscaffold_7G00209750 Rroxscaffold_7G00209760 Rroxscaffold_7G00209780 Rroxscaffold_7G00209790 Rroxscaffold_7G00209800 Rroxscaffold_7G00209810 Rroxscaffold_7G00209820 Rroxscaffold_7G00209830 Rroxscaffold_7G00209840
rosa_rugosa Rorug05G0559900 Rorug05G0560000 Rorug05G0560200 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560400 Rorug05G0560500
rosa_samantha Rh4BG250600 Rh6AG078600 Rh6AG078700 Rh6BG070800 Rh6BG071000 Rh6BG071200 Rh6BG071300 Rh6BG071600 Rh6BG071700 Rh6CG069300 Rh6CG069400 Rh6CG069700 Rh6CG069800 Rh6CG069900 Rh6DG066300 Rh6DG066400 Rh6DG066800 Rh6DG066900 Rh6DG067100 Rh6DG372200
rosa_wichuraiana Rw2G024460 Rw6G006610 Rw6G006770 Rw6G006780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 349
Acc36I ACCTGC 1 cut(s) 349
AccB1I GGYRCC 1 cut(s) 137
AccIII TCCGGA 1 cut(s) 197
AciI CCGC 7 cut(s) 39, 54, 66, 216, 243, 291, 354
AcoI YGGCCR 1 cut(s) 63
AfiI CCNNNNNNNGG 4 cut(s) 134, 148, 161, 369
AluBI AGCT 5 cut(s) 203, 264, 297, 318, 386
AluI AGCT 5 cut(s) 203, 264, 297, 318, 386
Aor13HI TCCGGA 1 cut(s) 197
AoxI GGCC 2 cut(s) 63, 405
AspS9I GGNCC 2 cut(s) 372, 406
AsuC2I CCSGG 2 cut(s) 149, 328
AsuNHI GCTAGC 1 cut(s) 293
AvaII GGWCC 1 cut(s) 372
BaeGI GKGCMC 1 cut(s) 142
BanI GGYRCC 1 cut(s) 137
BanII GRGCYC 1 cut(s) 334
BauI CACGAG 1 cut(s) 392
BbvCI CCTCAGC 1 cut(s) 219
BccI CCATC 1 cut(s) 50
BcnI CCSGG 2 cut(s) 149, 328
BfaI CTAG 3 cut(s) 240, 261, 294
BfuAI ACCTGC 1 cut(s) 349
BisI GCNGC 2 cut(s) 39, 66
BlsI GCNGC 2 cut(s) 40, 67
Bme1390I CCNGG 2 cut(s) 149, 328
Bme18I GGWCC 1 cut(s) 372
BmgT120I GGNCC 2 cut(s) 372, 406
BmiI GGNNCC 6 cut(s) 139, 153, 172, 225, 333, 373
BmrFI CCNGG 2 cut(s) 149, 328
BmtI GCTAGC 1 cut(s) 297
BoxI GACNNNNGTC 1 cut(s) 56
BplI GAGNNNNNCTC 2 cut(s) 375, 407
Bpu10I CCTNAGC 1 cut(s) 219
BpuMI CCSGG 2 cut(s) 149, 328
BsaJI CCNNGG 3 cut(s) 147, 327, 375
BsaWI WCCGGW 1 cut(s) 197
BsaXI ACNNNNNCTCC 4 cut(s) 175, 205, 316, 346
Bsc4I CCNNNNNNNGG 4 cut(s) 134, 148, 161, 369
BseAI TCCGGA 1 cut(s) 197
BseDI CCNNGG 3 cut(s) 147, 327, 375
BseLI CCNNNNNNNGG 4 cut(s) 134, 148, 161, 369
BseMII CTCAG 1 cut(s) 210
BseSI GKGCMC 1 cut(s) 142
BsgI GTGCAG 2 cut(s) 321, 327
BshFI GGCC 2 cut(s) 65, 407
BshNI GGYRCC 1 cut(s) 137
BsiSI CCGG 3 cut(s) 149, 198, 327
BslI CCNNNNNNNGG 4 cut(s) 134, 148, 161, 369
BsnI GGCC 2 cut(s) 65, 407
Bsp1286I GDGCHC 2 cut(s) 142, 334
Bsp13I TCCGGA 1 cut(s) 197
BspACI CCGC 7 cut(s) 39, 54, 66, 216, 243, 291, 354
BspANI GGCC 2 cut(s) 65, 407
BspCNI CTCAG 1 cut(s) 211
BspEI TCCGGA 1 cut(s) 197
BspLI GGNNCC 6 cut(s) 139, 153, 172, 225, 333, 373
BspMI ACCTGC 1 cut(s) 349
BspOI GCTAGC 1 cut(s) 297
BspT107I GGYRCC 1 cut(s) 137
BssECI CCNNGG 3 cut(s) 147, 327, 375
BssSI CACGAG 1 cut(s) 392
BssT1I CCWWGG 1 cut(s) 375
Bst2BI CACGAG 1 cut(s) 392
Bst4CI ACNGT 3 cut(s) 91, 161, 364
Bst6I CTCTTC 2 cut(s) 217, 241
BstC8I GCNNGC 1 cut(s) 295
BstDEI CTNAG 1 cut(s) 219
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNSI RCATGY 1 cut(s) 418
BstPAI GACNNNNGTC 1 cut(s) 56
BstSCI CCNGG 2 cut(s) 147, 326
BstSLI GKGCMC 1 cut(s) 142
BsuRI GGCC 2 cut(s) 65, 407
BtsIMutI CAGTG 1 cut(s) 166
BveI ACCTGC 1 cut(s) 349
Cac8I GCNNGC 1 cut(s) 295
Cfr13I GGNCC 2 cut(s) 372, 406
CviAII CATG 3 cut(s) 61, 176, 415
DdeI CTNAG 1 cut(s) 219
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 2 cut(s) 217, 241
EarI CTCTTC 2 cut(s) 217, 241
EciI GGCGGA 1 cut(s) 343
Eco130I CCWWGG 1 cut(s) 375
Eco24I GRGCYC 1 cut(s) 334
Eco47I GGWCC 1 cut(s) 372
EcoO109I RGGNCCY 1 cut(s) 372
EcoT14I CCWWGG 1 cut(s) 375
EcoT38I GRGCYC 1 cut(s) 334
ErhI CCWWGG 1 cut(s) 375
FaeI CATG 3 cut(s) 64, 179, 418
FaiI YATR 3 cut(s) 62, 177, 416
FalI AAGNNNNNCTT 1 cut(s) 37
FatI CATG 3 cut(s) 60, 175, 414
FauI CCCGC 1 cut(s) 236
Fnu4HI GCNGC 2 cut(s) 39, 66
FriOI GRGCYC 1 cut(s) 334
Fsp4HI GCNGC 2 cut(s) 39, 66
FspBI CTAG 3 cut(s) 240, 261, 294
GluI GCNGC 2 cut(s) 39, 66
HaeIII GGCC 2 cut(s) 65, 407
HapII CCGG 3 cut(s) 149, 198, 327
Hin1II CATG 3 cut(s) 64, 179, 418
HinfI GANTC 3 cut(s) 122, 248, 272
HpaII CCGG 3 cut(s) 149, 198, 327
Hpy188I TCNGA 3 cut(s) 268, 313, 383
Hpy188III TCNNGA 1 cut(s) 198
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 2 cut(s) 31, 409
HpyCH4III ACNGT 3 cut(s) 91, 161, 364
HpyCH4V TGCA 4 cut(s) 179, 338, 344, 418
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 1 cut(s) 219
Hsp92II CATG 3 cut(s) 64, 179, 418
Kpn2I TCCGGA 1 cut(s) 197
LmnI GCTCC 6 cut(s) 157, 176, 200, 229, 337, 383
LpnPI CCDG 7 cut(s) 120, 156, 162, 211, 340, 348, 354
MaeI CTAG 3 cut(s) 240, 261, 294
MaeIII GTNAC 1 cut(s) 49
MboII GAAGA 5 cut(s) 22, 25, 204, 228, 281
MhlI GDGCHC 2 cut(s) 142, 334
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 361
MnlI CCTC 7 cut(s) 205, 214, 244, 268, 292, 313, 361
MroI TCCGGA 1 cut(s) 197
MslI CAYNNNNRTG 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 218
MspI CCGG 3 cut(s) 149, 198, 327
MspR9I CCNGG 2 cut(s) 149, 328
MwoI GCNNNNNNNGC 1 cut(s) 62
NciI CCSGG 2 cut(s) 149, 328
NheI GCTAGC 1 cut(s) 293
NlaIII CATG 3 cut(s) 64, 179, 418
NlaIV GGNNCC 6 cut(s) 139, 153, 172, 225, 333, 373
NmuCI GTSAC 1 cut(s) 49
NspI RCATGY 1 cut(s) 418
PaqCI CACCTGC 1 cut(s) 349
PfeI GAWTC 2 cut(s) 248, 272
PkrI GCNGC 2 cut(s) 40, 67
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PpuMI RGGWCCY 1 cut(s) 372
PshAI GACNNNNGTC 1 cut(s) 56
Psp5II RGGWCCY 1 cut(s) 372
PspN4I GGNNCC 6 cut(s) 139, 153, 172, 225, 333, 373
PspPI GGNCC 2 cut(s) 372, 406
PspPPI RGGWCCY 1 cut(s) 372
RseI CAYNNNNRTG 1 cut(s) 47
SatI GCNGC 2 cut(s) 39, 66
Sau96I GGNCC 2 cut(s) 372, 406
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 2 cut(s) 149, 328
SduI GDGCHC 2 cut(s) 142, 334
SinI GGWCC 1 cut(s) 372
SmiMI CAYNNNNRTG 1 cut(s) 47
SsiI CCGC 7 cut(s) 39, 54, 66, 216, 243, 291, 354
SspMI CTAG 3 cut(s) 240, 261, 294
StyD4I CCNGG 2 cut(s) 147, 326
StyI CCWWGG 1 cut(s) 375
TaaI ACNGT 3 cut(s) 91, 161, 364
TauI GCSGC 2 cut(s) 41, 68
TfiI GAWTC 2 cut(s) 248, 272
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 1 cut(s) 23
TspRI CASTG 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 372
XceI RCATGY 1 cut(s) 418
XspI CTAG 3 cut(s) 240, 261, 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.