Rmu_sc0039760.1_g000001

Kynurenine formamidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039760.1
OG0000645
Physical Location & Seq
Reverse (-)
1 .. 1984
1984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039760.1_g000001.1.cds

Sequence Viewer

Length: 330 bp
atgaccaccgatcatgaaagtttgtttctttttgtattaataggtgcggcattgttagtcgacgttccgagagataagaacattaccgctgaagtcatggagggcttacatattcccaggggcgtgcgtcgtgtacttttcagaactttgaacacagacaaacggcttatgttccaaaaggagtttgacagcagctatgtgggatttatgaaggatggagctaagtggttggtggagaacactgacatcaaactgattggaattgattacttatctgctgctgcatatgatgatttgattccgtctcaccttgttttgctagaaggcaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclase

Protein Analysis

110

Amino Acids

12.47

Weight (kDa)

5.52

Isoelectric Point (pI)

26.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000645)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44542 AT4G34180 AT4G35220
fragaria_vesca FvH4_2g05360 FvH4_2g05360 FvH4_2g05380 FvH4_2g05400
malus_domestica MD00G1024900.v1.1 MD05G1087600.v1.1
prunus_persica Prupe.8G132800_v2.0.a1 Prupe.8G132800_v2.0.a1 Prupe.8G132900_v2.0.a1 Prupe.8G133000_v2.0.a1 Prupe.8G133300_v2.0.a1 Prupe.8G133400_v2.0.a1
pyrus_communis pycom05g08710
rosa_chinensis RchiOBHm_Chr6g0255621 RchiOBHm_Chr6g0255631 RchiOBHm_Chr6g0255661 RchiOBHm_Chr6g0255671 RchiOBHm_Chr6g0255681 RchiOBHm_Chr6g0255711
rosa_laevigata RLG00000014820 RLG00000014821 RLG00000014822 RLG00000014826
rosa_multiflora Rmu_co8458743.1_g000001 Rmu_sc0001422.1_g000004 Rmu_sc0005014.1_g000014 Rmu_sc0010421.1_g000001 Rmu_sc0010421.1_g000005 Rmu_sc0030046.1_g000001 Rmu_sc0039760.1_g000001 Rmu_ssc0000136.1_g000001 Rmu_ssc0000136.1_g000015
rosa_roxburghii Rroxscaffold_7G00209750 Rroxscaffold_7G00209760 Rroxscaffold_7G00209780 Rroxscaffold_7G00209790 Rroxscaffold_7G00209800 Rroxscaffold_7G00209810 Rroxscaffold_7G00209820 Rroxscaffold_7G00209830 Rroxscaffold_7G00209840
rosa_rugosa Rorug05G0559900 Rorug05G0560000 Rorug05G0560200 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560400 Rorug05G0560500
rosa_samantha Rh4BG250600 Rh6AG078600 Rh6AG078700 Rh6BG070800 Rh6BG071000 Rh6BG071200 Rh6BG071300 Rh6BG071600 Rh6BG071700 Rh6CG069300 Rh6CG069400 Rh6CG069700 Rh6CG069800 Rh6CG069900 Rh6DG066300 Rh6DG066400 Rh6DG066800 Rh6DG066900 Rh6DG067100 Rh6DG372200
rosa_wichuraiana Rw2G024460 Rw6G006610 Rw6G006770 Rw6G006780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 60
AciI CCGC 2 cut(s) 47, 87
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 1 cut(s) 135
AgsI TTSAA 1 cut(s) 151
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 2 cut(s) 195, 221
AluI AGCT 2 cut(s) 195, 221
Alw26I GTCTC 1 cut(s) 309
ApeKI GCWGC 3 cut(s) 192, 278, 281
AseI ATTAAT 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 299
BbvI GCAGC 3 cut(s) 204, 265, 268
BccI CCATC 1 cut(s) 209
BceAI ACGGC 1 cut(s) 179
BciT130I CCWGG 1 cut(s) 118
BcoDI GTCTC 1 cut(s) 309
BfaI CTAG 1 cut(s) 320
BisI GCNGC 4 cut(s) 48, 193, 279, 282
BlsI GCNGC 4 cut(s) 49, 194, 280, 283
Bme1390I CCNGG 1 cut(s) 118
BmrFI CCNGG 1 cut(s) 118
BsaJI CCNNGG 2 cut(s) 116, 117
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 2 cut(s) 116, 117
BseGI GGATG 1 cut(s) 220
BseXI GCAGC 3 cut(s) 204, 265, 268
BsmAI GTCTC 1 cut(s) 309
BsmBI CGTCTC 1 cut(s) 309
Bsp143I GATC 1 cut(s) 10
BspACI CCGC 2 cut(s) 47, 87
BspHI TCATGA 1 cut(s) 13
BssECI CCNNGG 2 cut(s) 116, 117
BssMI GATC 1 cut(s) 10
Bst2UI CCWGG 1 cut(s) 118
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 220
BstKTI GATC 1 cut(s) 13
BstMAI GTCTC 1 cut(s) 309
BstMBI GATC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 116
BstV1I GCAGC 3 cut(s) 204, 265, 268
BtsCI GGATG 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 240
Cac8I GCNNGC 1 cut(s) 125
CciI TCATGA 1 cut(s) 13
CseI GACGC 1 cut(s) 116
Csp6I GTAC 1 cut(s) 134
CviAII CATG 2 cut(s) 14, 97
CviJI RGCY 4 cut(s) 105, 166, 195, 221
CviKI_1 RGCY 4 cut(s) 105, 166, 195, 221
CviQI GTAC 1 cut(s) 134
DdeI CTNAG 1 cut(s) 222
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
Eco57I CTGAAG 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 116
Esp3I CGTCTC 1 cut(s) 309
FaeI CATG 2 cut(s) 17, 100
FaiI YATR 8 cut(s) 15, 98, 111, 170, 198, 209, 286, 288
FatI CATG 2 cut(s) 13, 96
FauNDI CATATG 1 cut(s) 286
FblI GTMKAC 1 cut(s) 60
Fnu4HI GCNGC 4 cut(s) 48, 193, 279, 282
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 4 cut(s) 48, 193, 279, 282
FspBI CTAG 1 cut(s) 320
GluI GCNGC 4 cut(s) 48, 193, 279, 282
HgaI GACGC 1 cut(s) 116
Hin1II CATG 2 cut(s) 17, 100
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 1 cut(s) 298
HphI GGTGA 1 cut(s) 299
Hpy166II GTNNAC 2 cut(s) 61, 134
Hpy188I TCNGA 2 cut(s) 69, 143
Hpy188III TCNNGA 1 cut(s) 14
Hpy8I GTNNAC 2 cut(s) 61, 134
Hpy99I CGWCG 2 cut(s) 65, 132
HpyAV CCTTC 2 cut(s) 205, 317
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 1 cut(s) 284
HpyF3I CTNAG 1 cut(s) 222
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 2 cut(s) 17, 100
Kzo9I GATC 1 cut(s) 10
LmnI GCTCC 1 cut(s) 218
LpnPI CCDG 2 cut(s) 103, 130
Lsp1109I GCAGC 3 cut(s) 204, 265, 268
MaeI CTAG 1 cut(s) 320
MaeII ACGT 1 cut(s) 63
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MluCI AATT 1 cut(s) 261
MnlI CCTC 1 cut(s) 94
MseI TTAA 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 118
MvaI CCWGG 1 cut(s) 118
NdeI CATATG 1 cut(s) 286
NdeII GATC 1 cut(s) 10
NlaIII CATG 2 cut(s) 17, 100
PagI TCATGA 1 cut(s) 13
PasI CCCWGGG 1 cut(s) 117
PfeI GAWTC 1 cut(s) 298
PkrI GCNGC 4 cut(s) 49, 194, 280, 283
PshBI ATTAAT 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
SalI GTCGAC 1 cut(s) 59
SaqAI TTAA 1 cut(s) 38
SatI GCNGC 4 cut(s) 48, 193, 279, 282
Sau3AI GATC 1 cut(s) 10
ScrFI CCNGG 1 cut(s) 118
SetI ASST 5 cut(s) 46, 66, 197, 223, 312
SgeI CNNG 8 cut(s) 26, 81, 109, 129, 130, 136, 143, 323
Sse9I AATT 1 cut(s) 261
SsiI CCGC 2 cut(s) 47, 87
SspMI CTAG 1 cut(s) 320
StyD4I CCNGG 1 cut(s) 116
TaiI ACGT 1 cut(s) 66
TaqI TCGA 1 cut(s) 60
TasI AATT 1 cut(s) 261
TatI WGTACW 1 cut(s) 133
TauI GCSGC 1 cut(s) 50
TfiI GAWTC 1 cut(s) 298
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TscAI CASTG 1 cut(s) 247
TseI GCWGC 3 cut(s) 192, 278, 281
TspDTI ATGAA 2 cut(s) 30, 224
TspGWI ACGGA 1 cut(s) 291
TspRI CASTG 1 cut(s) 247
VspI ATTAAT 1 cut(s) 38
XmiI GTMKAC 1 cut(s) 60
XspI CTAG 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.