Rmu_ssc0000136.1_g000001

Kynurenine formamidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000136.1
OG0000645
Physical Location & Seq
Forward (+)
1 .. 739
739 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000136.1_g000001.1.cds

Sequence Viewer

Length: 417 bp
tcctcctcctcctcaggctacggtcccggcgacactccaaaacccgttaggagggaagtatacggcaatgggagaatctttgacatcacccacaggtacaccccggagattcccgtatatggttcaaagcttgggatcggacatttccggtggctccaactgagcatgaagaatggttcacttaccaacaactcggaattcaagctgcctgttcacaccggaacccatgttgatgcccctggccatgtgtttgatgattactatgatgctgggtttgatgtagatcagcttgacttggaggtactcaatgcactatttgtttttgaccaaaaggacatggcaatgtgtaaaggggaacttatattgccttgcctcaagaagcttaccaacgagtttgatgtctgtgttttgaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclase

Protein Analysis

138

Amino Acids

15.43

Weight (kDa)

5.41

Isoelectric Point (pI)

27.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000645)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44542 AT4G34180 AT4G35220
fragaria_vesca FvH4_2g05360 FvH4_2g05360 FvH4_2g05380 FvH4_2g05400
malus_domestica MD00G1024900.v1.1 MD05G1087600.v1.1
prunus_persica Prupe.8G132800_v2.0.a1 Prupe.8G132800_v2.0.a1 Prupe.8G132900_v2.0.a1 Prupe.8G133000_v2.0.a1 Prupe.8G133300_v2.0.a1 Prupe.8G133400_v2.0.a1
pyrus_communis pycom05g08710
rosa_chinensis RchiOBHm_Chr6g0255621 RchiOBHm_Chr6g0255631 RchiOBHm_Chr6g0255661 RchiOBHm_Chr6g0255671 RchiOBHm_Chr6g0255681 RchiOBHm_Chr6g0255711
rosa_laevigata RLG00000014820 RLG00000014821 RLG00000014822 RLG00000014826
rosa_multiflora Rmu_co8458743.1_g000001 Rmu_sc0001422.1_g000004 Rmu_sc0005014.1_g000014 Rmu_sc0010421.1_g000001 Rmu_sc0010421.1_g000005 Rmu_sc0030046.1_g000001 Rmu_sc0039760.1_g000001 Rmu_ssc0000136.1_g000001 Rmu_ssc0000136.1_g000015
rosa_roxburghii Rroxscaffold_7G00209750 Rroxscaffold_7G00209760 Rroxscaffold_7G00209780 Rroxscaffold_7G00209790 Rroxscaffold_7G00209800 Rroxscaffold_7G00209810 Rroxscaffold_7G00209820 Rroxscaffold_7G00209830 Rroxscaffold_7G00209840
rosa_rugosa Rorug05G0559900 Rorug05G0560000 Rorug05G0560200 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560400 Rorug05G0560500
rosa_samantha Rh4BG250600 Rh6AG078600 Rh6AG078700 Rh6BG070800 Rh6BG071000 Rh6BG071200 Rh6BG071300 Rh6BG071600 Rh6BG071700 Rh6CG069300 Rh6CG069400 Rh6CG069700 Rh6CG069800 Rh6CG069900 Rh6DG066300 Rh6DG066400 Rh6DG066800 Rh6DG066900 Rh6DG067100 Rh6DG372200
rosa_wichuraiana Rw2G024460 Rw6G006610 Rw6G006770 Rw6G006780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 60
AclWI GGATC 1 cut(s) 143
AcoI YGGCCR 1 cut(s) 241
AcsI RAATTY 1 cut(s) 197
AfaI GTAC 2 cut(s) 98, 303
AfiI CCNNNNNNNGG 2 cut(s) 51, 119
AgsI TTSAA 3 cut(s) 126, 202, 412
AjnI CCWGG 1 cut(s) 238
AluBI AGCT 4 cut(s) 130, 205, 289, 382
AluI AGCT 4 cut(s) 130, 205, 289, 382
AlwI GGATC 1 cut(s) 143
AoxI GGCC 1 cut(s) 241
ApeKI GCWGC 1 cut(s) 205
ApoI RAATTY 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 23
AsuC2I CCSGG 2 cut(s) 27, 104
AsuHPI GGTGA 1 cut(s) 79
AvaII GGWCC 1 cut(s) 23
AxyI CCTNAGG 1 cut(s) 13
BalI TGGCCA 1 cut(s) 243
BbvI GCAGC 1 cut(s) 192
BceAI ACGGC 1 cut(s) 79
BciT130I CCWGG 1 cut(s) 240
BcnI CCSGG 2 cut(s) 27, 104
BisI GCNGC 1 cut(s) 206
BlsI GCNGC 1 cut(s) 207
Bme1390I CCNGG 3 cut(s) 27, 104, 240
Bme18I GGWCC 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 3 cut(s) 25, 155, 223
BmrFI CCNGG 3 cut(s) 27, 104, 240
BmsI GCATC 2 cut(s) 223, 256
BpuEI CTTGAG 1 cut(s) 359
BpuMI CCSGG 2 cut(s) 27, 104
BsaBI GATNNNNATC 1 cut(s) 282
BsaJI CCNNGG 2 cut(s) 102, 238
BsaWI WCCGGW 2 cut(s) 147, 218
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 119
Bse21I CCTNAGG 1 cut(s) 13
Bse3DI GCAATG 2 cut(s) 73, 348
Bse8I GATNNNNATC 1 cut(s) 282
BseBI CCWGG 1 cut(s) 240
BseDI CCNNGG 2 cut(s) 102, 238
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 2 cut(s) 51, 119
BseMI GCAATG 2 cut(s) 73, 348
BseMII CTCAG 2 cut(s) 27, 152
BseXI GCAGC 1 cut(s) 192
BseYI CCCAGC 1 cut(s) 269
BshFI GGCC 1 cut(s) 243
BsiSI CCGG 4 cut(s) 27, 104, 148, 219
BslFI GGGAC 1 cut(s) 9
BslI CCNNNNNNNGG 2 cut(s) 51, 119
BsmFI GGGAC 1 cut(s) 9
BsnI GGCC 1 cut(s) 243
Bsp143I GATC 2 cut(s) 135, 283
BspANI GGCC 1 cut(s) 243
BspCNI CTCAG 2 cut(s) 26, 153
BspLI GGNNCC 3 cut(s) 25, 155, 223
BspPI GGATC 1 cut(s) 143
BsrDI GCAATG 2 cut(s) 73, 348
BssECI CCNNGG 2 cut(s) 102, 238
BssMI GATC 2 cut(s) 135, 283
BssNAI GTATAC 1 cut(s) 61
Bst1107I GTATAC 1 cut(s) 61
Bst2UI CCWGG 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 23
BstDEI CTNAG 2 cut(s) 13, 161
BstKTI GATC 2 cut(s) 138, 286
BstMBI GATC 2 cut(s) 135, 283
BstNI CCWGG 1 cut(s) 240
BstSCI CCNGG 3 cut(s) 25, 102, 238
BstV1I GCAGC 1 cut(s) 192
BstZ17I GTATAC 1 cut(s) 61
Bsu36I CCTNAGG 1 cut(s) 13
BsuRI GGCC 1 cut(s) 243
Cfr13I GGNCC 1 cut(s) 23
Csp6I GTAC 2 cut(s) 97, 302
CviAII CATG 4 cut(s) 166, 227, 245, 337
CviJI RGCY 7 cut(s) 18, 130, 154, 205, 243, 289, 382
CviKI_1 RGCY 7 cut(s) 18, 130, 154, 205, 243, 289, 382
CviQI GTAC 2 cut(s) 97, 302
DdeI CTNAG 2 cut(s) 13, 161
DpnI GATC 2 cut(s) 137, 285
DpnII GATC 2 cut(s) 135, 283
EaeI YGGCCR 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 23
Eco81I CCTNAGG 1 cut(s) 13
EcoRI GAATTC 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 238
FaeI CATG 4 cut(s) 169, 230, 248, 340
FaiI YATR 9 cut(s) 61, 118, 120, 167, 228, 246, 264, 338, 362
FalI AAGNNNNNCTT 2 cut(s) 342, 374
FaqI GGGAC 1 cut(s) 9
FatI CATG 4 cut(s) 165, 226, 244, 336
FblI GTMKAC 1 cut(s) 60
Fnu4HI GCNGC 1 cut(s) 206
Fsp4HI GCNGC 1 cut(s) 206
GluI GCNGC 1 cut(s) 206
GsaI CCCAGC 1 cut(s) 273
HaeIII GGCC 1 cut(s) 243
HapII CCGG 4 cut(s) 27, 104, 148, 219
Hin1II CATG 4 cut(s) 169, 230, 248, 340
HindIII AAGCTT 2 cut(s) 128, 380
HinfI GANTC 2 cut(s) 75, 109
HpaII CCGG 4 cut(s) 27, 104, 148, 219
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 4 cut(s) 61, 99, 179, 214
Hpy188I TCNGA 2 cut(s) 140, 196
Hpy188III TCNNGA 1 cut(s) 376
Hpy8I GTNNAC 4 cut(s) 61, 99, 179, 214
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4V TGCA 1 cut(s) 311
HpyF3I CTNAG 2 cut(s) 13, 161
Hsp92II CATG 4 cut(s) 169, 230, 248, 340
Kzo9I GATC 2 cut(s) 135, 283
LmnI GCTCC 1 cut(s) 159
LpnPI CCDG 9 cut(s) 40, 79, 117, 161, 222, 225, 232, 252, 255
Lsp1109I GCAGC 1 cut(s) 192
LweI GCATC 2 cut(s) 223, 256
MalI GATC 2 cut(s) 137, 285
MboI GATC 2 cut(s) 135, 283
MboII GAAGA 1 cut(s) 181
MlsI TGGCCA 1 cut(s) 243
MluCI AATT 1 cut(s) 197
MluNI TGGCCA 1 cut(s) 243
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 7 cut(s) 13, 16, 19, 22, 45, 292, 383
Mox20I TGGCCA 1 cut(s) 243
MscI TGGCCA 1 cut(s) 243
MslI CAYNNNNRTG 2 cut(s) 231, 341
Msp20I TGGCCA 1 cut(s) 243
MspI CCGG 4 cut(s) 27, 104, 148, 219
MspR9I CCNGG 3 cut(s) 27, 104, 240
MvaI CCWGG 1 cut(s) 240
NciI CCSGG 2 cut(s) 27, 104
NdeII GATC 2 cut(s) 135, 283
NlaIII CATG 4 cut(s) 169, 230, 248, 340
NlaIV GGNNCC 3 cut(s) 25, 155, 223
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PfeI GAWTC 2 cut(s) 75, 109
PkrI GCNGC 1 cut(s) 207
Psp6I CCWGG 1 cut(s) 238
PspFI CCCAGC 1 cut(s) 269
PspGI CCWGG 1 cut(s) 238
PspN4I GGNNCC 3 cut(s) 25, 155, 223
PspPI GGNCC 1 cut(s) 23
RsaI GTAC 2 cut(s) 98, 303
RsaNI GTAC 2 cut(s) 97, 302
RseI CAYNNNNRTG 2 cut(s) 231, 341
SatI GCNGC 1 cut(s) 206
Sau3AI GATC 2 cut(s) 135, 283
Sau96I GGNCC 1 cut(s) 23
ScrFI CCNGG 3 cut(s) 27, 104, 240
SetI ASST 6 cut(s) 98, 132, 207, 291, 303, 384
SfaNI GCATC 2 cut(s) 223, 256
SinI GGWCC 1 cut(s) 23
SmiMI CAYNNNNRTG 2 cut(s) 231, 341
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 1 cut(s) 197
StyD4I CCNGG 3 cut(s) 25, 102, 238
TaaI ACNGT 1 cut(s) 23
TasI AATT 1 cut(s) 197
TfiI GAWTC 2 cut(s) 75, 109
TseI GCWGC 1 cut(s) 205
TspDTI ATGAA 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 23
XapI RAATTY 1 cut(s) 197
XmiI GTMKAC 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.