Prupe.8G132900_v2.0.a1

Kynurenine formamidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000645
Physical Location & Seq
Forward (+)
15483798 .. 15484349
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G132900.1

Sequence Viewer

Length: 459 bp
ATGAATAACAATACACCTCACGACCTCTTTCTTCTTCTCCTTCTTCTACATGCGCTACTATCATGCACCCTGGTTTGCATGGCCACGTTAACGTCTGACGTGGCCTACCCAACTGTCCCCGATGACTGCTTGTTGTCGGGGGAGGGTGTCCCTGTACCAATTCGGAGAGAGGTGTATGATAACGGTCGAATATTCGACATCAGCCACAAGTACGTTCCCGACATGCCGAGTTTCGTCGGGGAGGACGGGCTAGGCGAGTTCCTGTGGCTCGGCCACAGCATGAAGAACGGCTCACTGGTCAACGTGTCCATGATGAAGTTCAGTGTCCACTCCGACACGCACGTGGACGCCCCTGGTCACGTGTTCGACCATTTCTATGATGCTGGGTTTGACGCTGATACGCTTGACCTGGAAGTGTTAAATGGTCCTGCTCTGGTGGTTGGATGTTCCCAGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclase

Protein Analysis

153

Amino Acids

16.56

Weight (kDa)

4.51

Isoelectric Point (pI)

38.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000645)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44542 AT4G34180 AT4G35220
fragaria_vesca FvH4_2g05360 FvH4_2g05360 FvH4_2g05380 FvH4_2g05400
malus_domestica MD00G1024900.v1.1 MD05G1087600.v1.1
prunus_persica Prupe.8G132800_v2.0.a1 Prupe.8G132800_v2.0.a1 Prupe.8G132900_v2.0.a1 Prupe.8G133000_v2.0.a1 Prupe.8G133300_v2.0.a1 Prupe.8G133400_v2.0.a1
pyrus_communis pycom05g08710
rosa_chinensis RchiOBHm_Chr6g0255621 RchiOBHm_Chr6g0255631 RchiOBHm_Chr6g0255661 RchiOBHm_Chr6g0255671 RchiOBHm_Chr6g0255681 RchiOBHm_Chr6g0255711
rosa_laevigata RLG00000014820 RLG00000014821 RLG00000014822 RLG00000014826
rosa_multiflora Rmu_co8458743.1_g000001 Rmu_sc0001422.1_g000004 Rmu_sc0005014.1_g000014 Rmu_sc0010421.1_g000001 Rmu_sc0010421.1_g000005 Rmu_sc0030046.1_g000001 Rmu_sc0039760.1_g000001 Rmu_ssc0000136.1_g000001 Rmu_ssc0000136.1_g000015
rosa_roxburghii Rroxscaffold_7G00209750 Rroxscaffold_7G00209760 Rroxscaffold_7G00209780 Rroxscaffold_7G00209790 Rroxscaffold_7G00209800 Rroxscaffold_7G00209810 Rroxscaffold_7G00209820 Rroxscaffold_7G00209830 Rroxscaffold_7G00209840
rosa_rugosa Rorug05G0559900 Rorug05G0560000 Rorug05G0560200 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560400 Rorug05G0560500
rosa_samantha Rh4BG250600 Rh6AG078600 Rh6AG078700 Rh6BG070800 Rh6BG071000 Rh6BG071200 Rh6BG071300 Rh6BG071600 Rh6BG071700 Rh6CG069300 Rh6CG069400 Rh6CG069700 Rh6CG069800 Rh6CG069900 Rh6DG066300 Rh6DG066400 Rh6DG066800 Rh6DG066900 Rh6DG067100 Rh6DG372200
rosa_wichuraiana Rw2G024460 Rw6G006610 Rw6G006770 Rw6G006780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 81, 271
AcvI CACGTG 2 cut(s) 343, 361
AcyI GRCGYC 1 cut(s) 348
AfaI GTAC 2 cut(s) 156, 212
AflIII ACRYGT 2 cut(s) 303, 360
AjiI CACGTC 1 cut(s) 100
AjnI CCWGG 4 cut(s) 69, 352, 408, 450
AleI CACNNNNGTG 1 cut(s) 341
AoxI GGCC 3 cut(s) 81, 102, 271
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 425
AvaII GGWCC 1 cut(s) 425
BalI TGGCCA 1 cut(s) 83
BbrPI CACGTG 2 cut(s) 343, 361
BceAI ACGGC 1 cut(s) 304
BciT130I CCWGG 4 cut(s) 71, 354, 410, 452
BfaI CTAG 1 cut(s) 251
Bme1390I CCNGG 4 cut(s) 71, 354, 410, 452
Bme18I GGWCC 1 cut(s) 425
BmgBI CACGTC 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 425
BmrFI CCNGG 4 cut(s) 71, 354, 410, 452
BmsI GCATC 1 cut(s) 370
BsaAI YACGTR 2 cut(s) 343, 361
BsaHI GRCGYC 1 cut(s) 348
BsaJI CCNNGG 4 cut(s) 69, 352, 450, 451
Bse1I ACTGG 1 cut(s) 300
BseBI CCWGG 4 cut(s) 71, 354, 410, 452
BseDI CCNNGG 4 cut(s) 69, 352, 450, 451
BseGI GGATG 1 cut(s) 449
BseNI ACTGG 1 cut(s) 300
BseYI CCCAGC 1 cut(s) 383
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 3 cut(s) 83, 104, 273
BsiEI CGRYCG 1 cut(s) 187
BslFI GGGAC 2 cut(s) 101, 134
BsmFI GGGAC 2 cut(s) 101, 134
BsnI GGCC 3 cut(s) 83, 104, 273
BspANI GGCC 3 cut(s) 83, 104, 273
BsrI ACTGG 1 cut(s) 300
BssECI CCNNGG 4 cut(s) 69, 352, 450, 451
BssNI GRCGYC 1 cut(s) 348
Bst2UI CCWGG 4 cut(s) 71, 354, 410, 452
Bst4CI ACNGT 2 cut(s) 115, 185
BstACI GRCGYC 1 cut(s) 348
BstBAI YACGTR 2 cut(s) 343, 361
BstF5I GGATG 1 cut(s) 449
BstHHI GCGC 1 cut(s) 55
BstMCI CGRYCG 1 cut(s) 187
BstNI CCWGG 4 cut(s) 71, 354, 410, 452
BstNSI RCATGY 2 cut(s) 53, 226
BstSCI CCNGG 4 cut(s) 69, 352, 408, 450
BsuRI GGCC 3 cut(s) 83, 104, 273
BtrI CACGTC 1 cut(s) 100
BtsCI GGATG 1 cut(s) 449
BtsIMutI CAGTG 2 cut(s) 293, 328
CfoI GCGC 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 425
CseI GACGC 2 cut(s) 356, 401
Csp6I GTAC 2 cut(s) 155, 211
CviAII CATG 6 cut(s) 50, 63, 79, 223, 280, 310
CviJI RGCY 7 cut(s) 83, 104, 204, 250, 268, 273, 291
CviKI_1 RGCY 7 cut(s) 83, 104, 204, 250, 268, 273, 291
CviQI GTAC 2 cut(s) 155, 211
EaeI YGGCCR 2 cut(s) 81, 271
Eco47I GGWCC 1 cut(s) 425
Eco72I CACGTG 2 cut(s) 343, 361
EcoRII CCWGG 4 cut(s) 69, 352, 408, 450
FaeI CATG 6 cut(s) 53, 66, 82, 226, 283, 313
FaiI YATR 8 cut(s) 51, 64, 80, 177, 224, 281, 311, 378
FaqI GGGAC 2 cut(s) 101, 134
FatI CATG 6 cut(s) 49, 62, 78, 222, 279, 309
FspBI CTAG 1 cut(s) 251
GlaI GCGC 1 cut(s) 54
GsaI CCCAGC 1 cut(s) 387
HaeIII GGCC 3 cut(s) 83, 104, 273
HgaI GACGC 2 cut(s) 356, 401
HhaI GCGC 1 cut(s) 55
Hin1I GRCGYC 1 cut(s) 348
Hin1II CATG 6 cut(s) 53, 66, 82, 226, 283, 313
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HincII GTYRAC 2 cut(s) 90, 301
HindII GTYRAC 2 cut(s) 90, 301
HpaI GTTAAC 1 cut(s) 90
Hpy166II GTNNAC 4 cut(s) 90, 301, 328, 346
Hpy188I TCNGA 3 cut(s) 97, 165, 334
Hpy188III TCNNGA 2 cut(s) 20, 218
Hpy8I GTNNAC 4 cut(s) 90, 301, 328, 346
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 2 cut(s) 115, 185
HpyCH4IV ACGT 7 cut(s) 86, 92, 99, 213, 303, 342, 360
HpyCH4V TGCA 2 cut(s) 66, 78
HpySE526I ACGT 7 cut(s) 86, 92, 99, 213, 303, 342, 360
Hsp92I GRCGYC 1 cut(s) 348
Hsp92II CATG 6 cut(s) 53, 66, 82, 226, 283, 313
HspAI GCGC 1 cut(s) 53
KspAI GTTAAC 1 cut(s) 90
LweI GCATC 1 cut(s) 370
MaeI CTAG 1 cut(s) 251
MaeII ACGT 7 cut(s) 86, 92, 99, 213, 303, 342, 360
MaeIII GTNAC 1 cut(s) 356
MboII GAAGA 4 cut(s) 23, 26, 35, 295
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 1 cut(s) 159
MluNI TGGCCA 1 cut(s) 83
MmeI TCCRAC 2 cut(s) 357, 421
MnlI CCTC 5 cut(s) 27, 35, 136, 163, 235
Mox20I TGGCCA 1 cut(s) 83
MscI TGGCCA 1 cut(s) 83
MseI TTAA 2 cut(s) 89, 419
MslI CAYNNNNRTG 2 cut(s) 341, 375
Msp20I TGGCCA 1 cut(s) 83
MspR9I CCNGG 4 cut(s) 71, 354, 410, 452
MvaI CCWGG 4 cut(s) 71, 354, 410, 452
NlaIII CATG 6 cut(s) 53, 66, 82, 226, 283, 313
NmeAIII GCCGAG 2 cut(s) 249, 252
NmuCI GTSAC 1 cut(s) 356
NspI RCATGY 2 cut(s) 53, 226
OliI CACNNNNGTG 1 cut(s) 341
PasI CCCWGGG 1 cut(s) 451
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PmaCI CACGTG 2 cut(s) 343, 361
PmlI CACGTG 2 cut(s) 343, 361
Ppu21I YACGTR 2 cut(s) 343, 361
Psp6I CCWGG 4 cut(s) 69, 352, 408, 450
PspCI CACGTG 2 cut(s) 343, 361
PspFI CCCAGC 1 cut(s) 383
PspGI CCWGG 4 cut(s) 69, 352, 408, 450
PspPI GGNCC 1 cut(s) 425
RsaI GTAC 2 cut(s) 156, 212
RsaNI GTAC 2 cut(s) 155, 211
RseI CAYNNNNRTG 2 cut(s) 341, 375
SaqAI TTAA 2 cut(s) 89, 419
Sau96I GGNCC 1 cut(s) 425
ScrFI CCNGG 4 cut(s) 71, 354, 410, 452
SfaNI GCATC 1 cut(s) 370
SinI GGWCC 1 cut(s) 425
SmiMI CAYNNNNRTG 2 cut(s) 341, 375
Sse9I AATT 1 cut(s) 159
SspI AATATT 1 cut(s) 192
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 4 cut(s) 69, 352, 408, 450
TaaI ACNGT 2 cut(s) 115, 185
TaiI ACGT 7 cut(s) 89, 95, 102, 216, 306, 345, 363
TaqI TCGA 3 cut(s) 187, 195, 366
TasI AATT 1 cut(s) 159
Tru1I TTAA 2 cut(s) 89, 419
Tru9I TTAA 2 cut(s) 89, 419
TscAI CASTG 2 cut(s) 300, 328
TseFI GTSAC 1 cut(s) 356
Tsp45I GTSAC 1 cut(s) 356
TspDTI ATGAA 3 cut(s) 17, 296, 329
TspRI CASTG 2 cut(s) 300, 328
VpaK11BI GGWCC 1 cut(s) 425
XceI RCATGY 2 cut(s) 53, 226
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.