Rh6CG069800

Kynurenine formamidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000645
Physical Location & Seq
Reverse (-)
6905511 .. 6907947
2437 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG069800.1

Sequence Viewer

Length: 426 bp
ATGAGCATCAAAAATGGCTCGGACGCCAACGTTTCCGTGATGAAGTTCAGTGTCCACTCCGGCACCCATGTGGACGCGCCGGGTCATGTCTTCGACCACTACTACGATGCTGGCTTTGATGTTGATGCGCTTGACCTCGAATTCTTAAATGGTCCTGCACTGGTGGTTGATGTTCCGAGGAATAAGAACATAACTGCTGAAGTCATGGAGGCTTTAAATATTCCGAAAGGGGTGCGTCGTGTGCTTTTCAGAACCCTAAATACCGACAGGAAGCCTATGTGGAAGAAAGAGTTTGATACAAGCGCTGTAGGGTTTATGGAGGATGGGGCCAAATGGCTGGTGGACAACACAGACATTAAACTTATTGGTAACACGTTTAAGCAAGCCCTGCAGTATTTTTTTTTTTTTTTAATTGGAGTTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclase

Protein Analysis

141

Amino Acids

15.86

Weight (kDa)

5.74

Isoelectric Point (pI)

27.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclase PF04199 14 - 123 3.1e-16 Putative cyclase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000645)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44542 AT4G34180 AT4G35220
fragaria_vesca FvH4_2g05360 FvH4_2g05360 FvH4_2g05380 FvH4_2g05400
malus_domestica MD00G1024900.v1.1 MD05G1087600.v1.1
prunus_persica Prupe.8G132800_v2.0.a1 Prupe.8G132800_v2.0.a1 Prupe.8G132900_v2.0.a1 Prupe.8G133000_v2.0.a1 Prupe.8G133300_v2.0.a1 Prupe.8G133400_v2.0.a1
pyrus_communis pycom05g08710
rosa_chinensis RchiOBHm_Chr6g0255621 RchiOBHm_Chr6g0255631 RchiOBHm_Chr6g0255661 RchiOBHm_Chr6g0255671 RchiOBHm_Chr6g0255681 RchiOBHm_Chr6g0255711
rosa_laevigata RLG00000014820 RLG00000014821 RLG00000014822 RLG00000014826
rosa_multiflora Rmu_co8458743.1_g000001 Rmu_sc0001422.1_g000004 Rmu_sc0005014.1_g000014 Rmu_sc0010421.1_g000001 Rmu_sc0010421.1_g000005 Rmu_sc0030046.1_g000001 Rmu_sc0039760.1_g000001 Rmu_ssc0000136.1_g000001 Rmu_ssc0000136.1_g000015
rosa_roxburghii Rroxscaffold_7G00209750 Rroxscaffold_7G00209760 Rroxscaffold_7G00209780 Rroxscaffold_7G00209790 Rroxscaffold_7G00209800 Rroxscaffold_7G00209810 Rroxscaffold_7G00209820 Rroxscaffold_7G00209830 Rroxscaffold_7G00209840
rosa_rugosa Rorug05G0559900 Rorug05G0560000 Rorug05G0560200 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560400 Rorug05G0560500
rosa_samantha Rh4BG250600 Rh6AG078600 Rh6AG078700 Rh6BG070800 Rh6BG071000 Rh6BG071200 Rh6BG071300 Rh6BG071600 Rh6BG071700 Rh6CG069300 Rh6CG069400 Rh6CG069700 Rh6CG069800 Rh6CG069900 Rh6DG066300 Rh6DG066400 Rh6DG066800 Rh6DG066900 Rh6DG067100 Rh6DG372200
rosa_wichuraiana Rw2G024460 Rw6G006610 Rw6G006770 Rw6G006780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 62
AccII CGCG 1 cut(s) 77
AclI AACGTT 1 cut(s) 30
AcsI RAATTY 1 cut(s) 140
AcuI CTGAAG 1 cut(s) 219
AcyI GRCGYC 1 cut(s) 24
AfeI AGCGCT 1 cut(s) 304
AflIII ACRYGT 1 cut(s) 372
AleI CACNNNNGTG 1 cut(s) 68
Aor51HI AGCGCT 1 cut(s) 304
AoxI GGCC 1 cut(s) 327
ApoI RAATTY 1 cut(s) 140
AspLEI GCGC 3 cut(s) 79, 130, 305
AspS9I GGNCC 2 cut(s) 152, 327
AsuC2I CCSGG 1 cut(s) 81
AvaII GGWCC 1 cut(s) 152
BanI GGYRCC 1 cut(s) 62
BbsI GAAGAC 1 cut(s) 82
BccI CCATC 1 cut(s) 317
BcgI CGANNNNNNTGC 2 cut(s) 214, 248
BcnI CCSGG 1 cut(s) 81
BfmI CTRYAG 2 cut(s) 306, 389
BfoI RGCGCY 1 cut(s) 306
Bme1390I CCNGG 1 cut(s) 81
Bme18I GGWCC 1 cut(s) 152
BmgT120I GGNCC 2 cut(s) 152, 327
BmiI GGNNCC 2 cut(s) 64, 328
BmrFI CCNGG 1 cut(s) 81
BmsI GCATC 3 cut(s) 15, 97, 115
BpiI GAAGAC 1 cut(s) 82
BpuMI CCSGG 1 cut(s) 81
BsaHI GRCGYC 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 176
BseGI GGATG 1 cut(s) 328
BseNI ACTGG 1 cut(s) 165
BsgI GTGCAG 1 cut(s) 141
Bsh1236I CGCG 1 cut(s) 77
BshFI GGCC 1 cut(s) 329
BshNI GGYRCC 1 cut(s) 62
BsiSI CCGG 2 cut(s) 60, 80
BsnI GGCC 1 cut(s) 329
BspANI GGCC 1 cut(s) 329
BspFNI CGCG 1 cut(s) 77
BspLI GGNNCC 2 cut(s) 64, 328
BspMAI CTGCAG 1 cut(s) 393
BspT107I GGYRCC 1 cut(s) 62
BsrI ACTGG 1 cut(s) 165
BssECI CCNNGG 1 cut(s) 176
BssNI GRCGYC 1 cut(s) 24
BstACI GRCGYC 1 cut(s) 24
BstAPI GCANNNNNTGC 1 cut(s) 388
BstC8I GCNNGC 2 cut(s) 112, 384
BstF5I GGATG 1 cut(s) 328
BstFNI CGCG 1 cut(s) 77
BstH2I RGCGCY 1 cut(s) 306
BstHHI GCGC 3 cut(s) 79, 130, 305
BstMWI GCNNNNNNNGC 2 cut(s) 241, 388
BstSCI CCNGG 1 cut(s) 79
BstSFI CTRYAG 2 cut(s) 306, 389
BstUI CGCG 1 cut(s) 77
BstV2I GAAGAC 1 cut(s) 82
BstXI CCANNNNNNTGG 1 cut(s) 337
BsuRI GGCC 1 cut(s) 329
BtsCI GGATG 1 cut(s) 328
BtsIMutI CAGTG 2 cut(s) 55, 158
Cac8I GCNNGC 2 cut(s) 112, 384
CfoI GCGC 3 cut(s) 79, 130, 305
Cfr13I GGNCC 2 cut(s) 152, 327
CseI GACGC 3 cut(s) 32, 83, 224
CviAII CATG 3 cut(s) 68, 86, 205
CviJI RGCY 7 cut(s) 18, 114, 212, 274, 329, 337, 386
CviKI_1 RGCY 7 cut(s) 18, 114, 212, 274, 329, 337, 386
DraI TTTAAA 1 cut(s) 216
Eco47I GGWCC 1 cut(s) 152
Eco47III AGCGCT 1 cut(s) 304
Eco57I CTGAAG 1 cut(s) 219
EcoRI GAATTC 1 cut(s) 140
FaeI CATG 3 cut(s) 71, 89, 208
FaiI YATR 6 cut(s) 69, 87, 191, 206, 278, 317
FatI CATG 3 cut(s) 67, 85, 204
FokI GGATG 1 cut(s) 335
GlaI GCGC 3 cut(s) 78, 129, 304
HaeII RGCGCY 1 cut(s) 306
HaeIII GGCC 1 cut(s) 329
HapII CCGG 2 cut(s) 60, 80
HgaI GACGC 3 cut(s) 32, 83, 224
HhaI GCGC 3 cut(s) 79, 130, 305
Hin1I GRCGYC 1 cut(s) 24
Hin1II CATG 3 cut(s) 71, 89, 208
Hin6I GCGC 3 cut(s) 77, 128, 303
HinP1I GCGC 3 cut(s) 77, 128, 303
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HpaI GTTAAC 1 cut(s) 421
HpaII CCGG 2 cut(s) 60, 80
Hpy166II GTNNAC 4 cut(s) 55, 73, 343, 421
Hpy188I TCNGA 4 cut(s) 22, 177, 225, 251
Hpy8I GTNNAC 4 cut(s) 55, 73, 343, 421
Hpy99I CGWCG 1 cut(s) 240
HpyCH4IV ACGT 2 cut(s) 30, 374
HpyCH4V TGCA 2 cut(s) 158, 391
HpyF10VI GCNNNNNNNGC 2 cut(s) 241, 388
HpySE526I ACGT 2 cut(s) 30, 374
Hsp92I GRCGYC 1 cut(s) 24
Hsp92II CATG 3 cut(s) 71, 89, 208
HspAI GCGC 3 cut(s) 77, 128, 303
KspAI GTTAAC 1 cut(s) 421
LpnPI CCDG 8 cut(s) 73, 93, 96, 146, 168, 253, 323, 401
LweI GCATC 3 cut(s) 15, 97, 115
MaeII ACGT 2 cut(s) 30, 374
MaeIII GTNAC 1 cut(s) 368
MboII GAAGA 2 cut(s) 82, 295
MluCI AATT 2 cut(s) 140, 411
MnlI CCTC 4 cut(s) 146, 171, 202, 313
MseI TTAA 6 cut(s) 146, 215, 357, 378, 410, 420
MslI CAYNNNNRTG 1 cut(s) 68
MspI CCGG 2 cut(s) 60, 80
MspR9I CCNGG 1 cut(s) 81
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 2 cut(s) 241, 388
NciI CCSGG 1 cut(s) 81
NlaIII CATG 3 cut(s) 71, 89, 208
NlaIV GGNNCC 2 cut(s) 64, 328
OliI CACNNNNGTG 1 cut(s) 68
Psp1406I AACGTT 1 cut(s) 30
PspN4I GGNNCC 2 cut(s) 64, 328
PspPI GGNCC 2 cut(s) 152, 327
PsrI GAACNNNNNNTAC 2 cut(s) 244, 276
PstI CTGCAG 1 cut(s) 393
RseI CAYNNNNRTG 1 cut(s) 68
SaqAI TTAA 6 cut(s) 146, 215, 357, 378, 410, 420
Sau96I GGNCC 2 cut(s) 152, 327
ScrFI CCNGG 1 cut(s) 81
SetI ASST 3 cut(s) 33, 138, 377
SfaNI GCATC 3 cut(s) 15, 97, 115
SfcI CTRYAG 2 cut(s) 306, 389
SinI GGWCC 1 cut(s) 152
SmiMI CAYNNNNRTG 1 cut(s) 68
Sse9I AATT 2 cut(s) 140, 411
SspI AATATT 1 cut(s) 220
StyD4I CCNGG 1 cut(s) 79
TaiI ACGT 2 cut(s) 33, 377
TaqI TCGA 2 cut(s) 93, 138
TasI AATT 2 cut(s) 140, 411
Tru1I TTAA 6 cut(s) 146, 215, 357, 378, 410, 420
Tru9I TTAA 6 cut(s) 146, 215, 357, 378, 410, 420
TscAI CASTG 2 cut(s) 55, 165
TspDTI ATGAA 1 cut(s) 56
TspGWI ACGGA 1 cut(s) 25
TspRI CASTG 2 cut(s) 55, 165
VpaK11BI GGWCC 1 cut(s) 152
XapI RAATTY 1 cut(s) 140
XcmI CCANNNNNNNNNTGG 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.