Rorug05G0560200

Kynurenine formamidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000645
Physical Location & Seq
Forward (+)
75029065 .. 75029223
159 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0560200.1

Sequence Viewer

Length: 159 bp
ATGTTCCCTCTGTGTAGGGTTATCCACTTAAACCCAAATGAATCTGACCACCTTCCCATTTTGTTGGAAGTGAGGAAAGTGAGGAGGAAAAAAAGGTTTTGTTTTGAGGAGTTCTGGCTGCATGAGGATGACTGTAGGGAGGTGGTTGAGGCGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclase

Protein Analysis

52

Amino Acids

6.35

Weight (kDa)

6.26

Isoelectric Point (pI)

54.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000645)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44542 AT4G34180 AT4G35220
fragaria_vesca FvH4_2g05360 FvH4_2g05360 FvH4_2g05380 FvH4_2g05400
malus_domestica MD00G1024900.v1.1 MD05G1087600.v1.1
prunus_persica Prupe.8G132800_v2.0.a1 Prupe.8G132800_v2.0.a1 Prupe.8G132900_v2.0.a1 Prupe.8G133000_v2.0.a1 Prupe.8G133300_v2.0.a1 Prupe.8G133400_v2.0.a1
pyrus_communis pycom05g08710
rosa_chinensis RchiOBHm_Chr6g0255621 RchiOBHm_Chr6g0255631 RchiOBHm_Chr6g0255661 RchiOBHm_Chr6g0255671 RchiOBHm_Chr6g0255681 RchiOBHm_Chr6g0255711
rosa_laevigata RLG00000014820 RLG00000014821 RLG00000014822 RLG00000014826
rosa_multiflora Rmu_co8458743.1_g000001 Rmu_sc0001422.1_g000004 Rmu_sc0005014.1_g000014 Rmu_sc0010421.1_g000001 Rmu_sc0010421.1_g000005 Rmu_sc0030046.1_g000001 Rmu_sc0039760.1_g000001 Rmu_ssc0000136.1_g000001 Rmu_ssc0000136.1_g000015
rosa_roxburghii Rroxscaffold_7G00209750 Rroxscaffold_7G00209760 Rroxscaffold_7G00209780 Rroxscaffold_7G00209790 Rroxscaffold_7G00209800 Rroxscaffold_7G00209810 Rroxscaffold_7G00209820 Rroxscaffold_7G00209830 Rroxscaffold_7G00209840
rosa_rugosa Rorug05G0559900 Rorug05G0560000 Rorug05G0560200 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560400 Rorug05G0560500
rosa_samantha Rh4BG250600 Rh6AG078600 Rh6AG078700 Rh6BG070800 Rh6BG071000 Rh6BG071200 Rh6BG071300 Rh6BG071600 Rh6BG071700 Rh6CG069300 Rh6CG069400 Rh6CG069700 Rh6CG069800 Rh6CG069900 Rh6DG066300 Rh6DG066400 Rh6DG066800 Rh6DG066900 Rh6DG067100 Rh6DG372200
rosa_wichuraiana Rw2G024460 Rw6G006610 Rw6G006770 Rw6G006780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 152
ApeKI GCWGC 1 cut(s) 118
BbvI GCAGC 1 cut(s) 105
BfmI CTRYAG 1 cut(s) 133
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
BseGI GGATG 1 cut(s) 133
BseRI GAGGAG 2 cut(s) 97, 122
BseXI GCAGC 1 cut(s) 105
BspACI CCGC 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 134
BstF5I GGATG 1 cut(s) 133
BstSFI CTRYAG 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 105
BstXI CCANNNNNNTGG 1 cut(s) 64
BtsCI GGATG 1 cut(s) 133
CviAII CATG 1 cut(s) 122
CviJI RGCY 1 cut(s) 118
CviKI_1 RGCY 1 cut(s) 118
FaeI CATG 1 cut(s) 125
FaiI YATR 1 cut(s) 123
FatI CATG 1 cut(s) 121
FauI CCCGC 1 cut(s) 145
Fnu4HI GCNGC 1 cut(s) 119
FokI GGATG 1 cut(s) 140
Fsp4HI GCNGC 1 cut(s) 119
GluI GCNGC 1 cut(s) 119
Hin1II CATG 1 cut(s) 125
HinfI GANTC 1 cut(s) 41
Hpy188I TCNGA 1 cut(s) 46
HpyAV CCTTC 1 cut(s) 62
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4V TGCA 1 cut(s) 121
Hsp92II CATG 1 cut(s) 125
LpnPI CCDG 1 cut(s) 100
Lsp1109I GCAGC 1 cut(s) 105
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 8 cut(s) 18, 66, 75, 78, 100, 118, 133, 142
MseI TTAA 1 cut(s) 29
MslI CAYNNNNRTG 1 cut(s) 126
NlaIII CATG 1 cut(s) 125
PfeI GAWTC 1 cut(s) 41
PkrI GCNGC 1 cut(s) 120
RseI CAYNNNNRTG 1 cut(s) 126
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 1 cut(s) 119
SetI ASST 3 cut(s) 54, 98, 144
SfcI CTRYAG 1 cut(s) 133
SgeI CNNG 2 cut(s) 127, 134
SmiMI CAYNNNNRTG 1 cut(s) 126
SsiI CCGC 1 cut(s) 152
TaaI ACNGT 1 cut(s) 134
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TseI GCWGC 1 cut(s) 118
TspDTI ATGAA 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.