Rmu_sc0030046.1_g000001

Kynurenine formamidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030046.1
OG0000645
Physical Location & Seq
Forward (+)
1927 .. 2352
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030046.1_g000001.1.cds

Sequence Viewer

Length: 426 bp
atgaagaccttattctttctcctcctactctgctccctttcgctcacactccccactctctcccacgccaccaccgcctacccttccgttcccggcaccgcctccgctgactgttctttctccgacggcgacaccgcccctctaattccccctcgccacgaagtttatggaaatggccgaatcttcgacatcacccaccgtatcaccacggcgatgccgtcgtatttctccccggacggcgtgttgggccagttcctgtggctcccccacagcatgaagaaccgctctattgcaaacatgtcagttttcaagctgcctactcacaccggcacgcatgttgattcacccggacacttcttcgatcactacctcgatgctggcttcgacgtcgatacgcttgacttggaggtgcttaatggtaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclase

Protein Analysis

141

Amino Acids

15.44

Weight (kDa)

5.61

Isoelectric Point (pI)

32.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000645)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44542 AT4G34180 AT4G35220
fragaria_vesca FvH4_2g05360 FvH4_2g05360 FvH4_2g05380 FvH4_2g05400
malus_domestica MD00G1024900.v1.1 MD05G1087600.v1.1
prunus_persica Prupe.8G132800_v2.0.a1 Prupe.8G132800_v2.0.a1 Prupe.8G132900_v2.0.a1 Prupe.8G133000_v2.0.a1 Prupe.8G133300_v2.0.a1 Prupe.8G133400_v2.0.a1
pyrus_communis pycom05g08710
rosa_chinensis RchiOBHm_Chr6g0255621 RchiOBHm_Chr6g0255631 RchiOBHm_Chr6g0255661 RchiOBHm_Chr6g0255671 RchiOBHm_Chr6g0255681 RchiOBHm_Chr6g0255711
rosa_laevigata RLG00000014820 RLG00000014821 RLG00000014822 RLG00000014826
rosa_multiflora Rmu_co8458743.1_g000001 Rmu_sc0001422.1_g000004 Rmu_sc0005014.1_g000014 Rmu_sc0010421.1_g000001 Rmu_sc0010421.1_g000005 Rmu_sc0030046.1_g000001 Rmu_sc0039760.1_g000001 Rmu_ssc0000136.1_g000001 Rmu_ssc0000136.1_g000015
rosa_roxburghii Rroxscaffold_7G00209750 Rroxscaffold_7G00209760 Rroxscaffold_7G00209780 Rroxscaffold_7G00209790 Rroxscaffold_7G00209800 Rroxscaffold_7G00209810 Rroxscaffold_7G00209820 Rroxscaffold_7G00209830 Rroxscaffold_7G00209840
rosa_rugosa Rorug05G0559900 Rorug05G0560000 Rorug05G0560200 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560400 Rorug05G0560500
rosa_samantha Rh4BG250600 Rh6AG078600 Rh6AG078700 Rh6BG070800 Rh6BG071000 Rh6BG071200 Rh6BG071300 Rh6BG071600 Rh6BG071700 Rh6CG069300 Rh6CG069400 Rh6CG069700 Rh6CG069800 Rh6CG069900 Rh6DG066300 Rh6DG066400 Rh6DG066800 Rh6DG066900 Rh6DG067100 Rh6DG372200
rosa_wichuraiana Rw2G024460 Rw6G006610 Rw6G006770 Rw6G006780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 390
AccB1I GGYRCC 1 cut(s) 95
AccBSI CCGCTC 1 cut(s) 285
AciI CCGC 5 cut(s) 75, 99, 105, 135, 283
AcoI YGGCCR 1 cut(s) 175
AcyI GRCGYC 1 cut(s) 387
AflIII ACRYGT 1 cut(s) 297
AgsI TTSAA 1 cut(s) 310
AluBI AGCT 1 cut(s) 313
AluI AGCT 1 cut(s) 313
AlwNI CAGNNNCTG 1 cut(s) 256
AoxI GGCC 2 cut(s) 175, 247
ApeKI GCWGC 1 cut(s) 313
AspS9I GGNCC 1 cut(s) 247
AsuC2I CCSGG 3 cut(s) 93, 233, 348
AsuHPI GGTGA 3 cut(s) 184, 196, 336
BanI GGYRCC 1 cut(s) 95
BbsI GAAGAC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 300
BceAI ACGGC 4 cut(s) 142, 202, 225, 253
BcnI CCSGG 3 cut(s) 93, 233, 348
BisI GCNGC 1 cut(s) 314
BlsI GCNGC 1 cut(s) 315
Bme1390I CCNGG 3 cut(s) 93, 233, 348
BmgT120I GGNCC 1 cut(s) 247
BmiI GGNNCC 2 cut(s) 97, 263
BmrFI CCNGG 3 cut(s) 93, 233, 348
BmsI GCATC 2 cut(s) 204, 364
BpiI GAAGAC 1 cut(s) 11
BpuMI CCSGG 3 cut(s) 93, 233, 348
BsaHI GRCGYC 1 cut(s) 387
BsaJI CCNNGG 2 cut(s) 207, 231
Bse118I RCCGGY 1 cut(s) 326
Bse1I ACTGG 1 cut(s) 250
BseDI CCNNGG 2 cut(s) 207, 231
BseNI ACTGG 1 cut(s) 250
BseRI GAGGAG 1 cut(s) 11
BseXI GCAGC 1 cut(s) 300
BshFI GGCC 2 cut(s) 177, 249
BshNI GGYRCC 1 cut(s) 95
BsiSI CCGG 4 cut(s) 93, 233, 327, 348
BsnI GGCC 2 cut(s) 177, 249
Bsp143I GATC 1 cut(s) 361
BspACI CCGC 5 cut(s) 75, 99, 105, 135, 283
BspANI GGCC 2 cut(s) 177, 249
BspLI GGNNCC 2 cut(s) 97, 263
BspT107I GGYRCC 1 cut(s) 95
BsrBI CCGCTC 1 cut(s) 285
BsrFI RCCGGY 1 cut(s) 326
BsrI ACTGG 1 cut(s) 250
BssAI RCCGGY 1 cut(s) 326
BssECI CCNNGG 2 cut(s) 207, 231
BssMI GATC 1 cut(s) 361
BssNI GRCGYC 1 cut(s) 387
Bst4CI ACNGT 2 cut(s) 113, 200
BstACI GRCGYC 1 cut(s) 387
BstC8I GCNNGC 2 cut(s) 332, 379
BstDSI CCRYGG 1 cut(s) 207
BstKTI GATC 1 cut(s) 364
BstMBI GATC 1 cut(s) 361
BstMWI GCNNNNNNNGC 2 cut(s) 74, 246
BstNSI RCATGY 2 cut(s) 301, 338
BstSCI CCNGG 3 cut(s) 91, 231, 346
BstV1I GCAGC 1 cut(s) 300
BstV2I GAAGAC 1 cut(s) 11
BsuRI GGCC 2 cut(s) 177, 249
BtgI CCRYGG 1 cut(s) 207
BtgZI GCGATG 1 cut(s) 227
Cac8I GCNNGC 2 cut(s) 332, 379
CaiI CAGNNNCTG 1 cut(s) 256
Cfr10I RCCGGY 1 cut(s) 326
Cfr13I GGNCC 1 cut(s) 247
CviAII CATG 3 cut(s) 274, 298, 335
CviJI RGCY 5 cut(s) 177, 249, 262, 313, 381
CviKI_1 RGCY 5 cut(s) 177, 249, 262, 313, 381
DpnI GATC 1 cut(s) 363
DpnII GATC 1 cut(s) 361
EaeI YGGCCR 1 cut(s) 175
FaeI CATG 3 cut(s) 277, 301, 338
FaiI YATR 4 cut(s) 168, 275, 299, 336
FatI CATG 3 cut(s) 273, 297, 334
Fnu4HI GCNGC 1 cut(s) 314
Fsp4HI GCNGC 1 cut(s) 314
GluI GCNGC 1 cut(s) 314
HaeIII GGCC 2 cut(s) 177, 249
HapII CCGG 4 cut(s) 93, 233, 327, 348
Hin1I GRCGYC 1 cut(s) 387
Hin1II CATG 3 cut(s) 277, 301, 338
HinfI GANTC 2 cut(s) 180, 341
HpaII CCGG 4 cut(s) 93, 233, 327, 348
HphI GGTGA 3 cut(s) 184, 196, 336
Hpy188I TCNGA 1 cut(s) 124
Hpy99I CGWCG 4 cut(s) 128, 223, 389, 392
HpyAV CCTTC 1 cut(s) 93
HpyCH4III ACNGT 2 cut(s) 113, 200
HpyCH4IV ACGT 1 cut(s) 387
HpyCH4V TGCA 1 cut(s) 293
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 246
HpySE526I ACGT 1 cut(s) 387
Hsp92I GRCGYC 1 cut(s) 387
Hsp92II CATG 3 cut(s) 277, 301, 338
Kzo9I GATC 1 cut(s) 361
LmnI GCTCC 2 cut(s) 38, 267
LpnPI CCDG 7 cut(s) 106, 246, 263, 269, 340, 361, 363
Lsp1109I GCAGC 1 cut(s) 300
LweI GCATC 2 cut(s) 204, 364
MaeII ACGT 1 cut(s) 387
MalI GATC 1 cut(s) 363
MbiI CCGCTC 1 cut(s) 285
MboI GATC 1 cut(s) 361
MboII GAAGA 4 cut(s) 16, 175, 289, 349
MluCI AATT 2 cut(s) 144, 421
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 6 cut(s) 32, 112, 150, 162, 380, 400
MseI TTAA 1 cut(s) 414
MslI CAYNNNNRTG 1 cut(s) 212
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 4 cut(s) 93, 233, 327, 348
MspR9I CCNGG 3 cut(s) 93, 233, 348
MwoI GCNNNNNNNGC 2 cut(s) 74, 246
NciI CCSGG 3 cut(s) 93, 233, 348
NdeII GATC 1 cut(s) 361
NlaIII CATG 3 cut(s) 277, 301, 338
NlaIV GGNNCC 2 cut(s) 97, 263
NspI RCATGY 2 cut(s) 301, 338
PciI ACATGT 1 cut(s) 297
PcsI WCGNNNNNNNCGW 1 cut(s) 215
PfeI GAWTC 2 cut(s) 180, 341
PkrI GCNGC 1 cut(s) 315
PscI ACATGT 1 cut(s) 297
PspN4I GGNNCC 2 cut(s) 97, 263
PspPI GGNCC 1 cut(s) 247
PstNI CAGNNNCTG 1 cut(s) 256
RseI CAYNNNNRTG 1 cut(s) 212
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 1 cut(s) 314
Sau3AI GATC 1 cut(s) 361
Sau96I GGNCC 1 cut(s) 247
ScrFI CCNGG 3 cut(s) 93, 233, 348
SetI ASST 5 cut(s) 11, 315, 372, 390, 411
SfaNI GCATC 2 cut(s) 204, 364
SmiMI CAYNNNNRTG 1 cut(s) 212
Sse9I AATT 2 cut(s) 144, 421
SsiI CCGC 5 cut(s) 75, 99, 105, 135, 283
StyD4I CCNGG 3 cut(s) 91, 231, 346
TaaI ACNGT 2 cut(s) 113, 200
TaiI ACGT 1 cut(s) 390
TaqI TCGA 5 cut(s) 186, 360, 372, 384, 390
TasI AATT 2 cut(s) 144, 421
TfiI GAWTC 2 cut(s) 180, 341
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TseI GCWGC 1 cut(s) 313
TspDTI ATGAA 2 cut(s) 17, 290
TspGWI ACGGA 1 cut(s) 76
XceI RCATGY 2 cut(s) 301, 338
XcmI CCANNNNNNNNNTGG 1 cut(s) 164
ZraI GACGTC 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.