Rorug05G0559900

Kynurenine formamidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000645
Physical Location & Seq
Forward (+)
74970331 .. 74970600
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0559900.1

Sequence Viewer

Length: 270 bp
ATGGACATGAAGAAGATTGCCTTTGTCGTCCTTGTCGTTGCCGTCTGCATGACCGCAGTCATGGCCGCGGAAGTTGAAAAGCCAAAGCCCAAAGCCACGAAAGCTGGTGCCCCTGCCCCGGCTCCCACAGGTTCCGTCGCAGCCGCTCCTACTCCCACCGATGGCACTCCCACCGGGGCTCCTGCACCTGCACATTCCTCTGCCAACACCATAGTTGGGTCCTTGGCTGGAGCTTCACTCGTGTCCTTCTTGGCCCTTTACCTGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclase

Protein Analysis

89

Amino Acids

8.7

Weight (kDa)

8.93

Isoelectric Point (pI)

29.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000645)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44542 AT4G34180 AT4G35220
fragaria_vesca FvH4_2g05360 FvH4_2g05360 FvH4_2g05380 FvH4_2g05400
malus_domestica MD00G1024900.v1.1 MD05G1087600.v1.1
prunus_persica Prupe.8G132800_v2.0.a1 Prupe.8G132800_v2.0.a1 Prupe.8G132900_v2.0.a1 Prupe.8G133000_v2.0.a1 Prupe.8G133300_v2.0.a1 Prupe.8G133400_v2.0.a1
pyrus_communis pycom05g08710
rosa_chinensis RchiOBHm_Chr6g0255621 RchiOBHm_Chr6g0255631 RchiOBHm_Chr6g0255661 RchiOBHm_Chr6g0255671 RchiOBHm_Chr6g0255681 RchiOBHm_Chr6g0255711
rosa_laevigata RLG00000014820 RLG00000014821 RLG00000014822 RLG00000014826
rosa_multiflora Rmu_co8458743.1_g000001 Rmu_sc0001422.1_g000004 Rmu_sc0005014.1_g000014 Rmu_sc0010421.1_g000001 Rmu_sc0010421.1_g000005 Rmu_sc0030046.1_g000001 Rmu_sc0039760.1_g000001 Rmu_ssc0000136.1_g000001 Rmu_ssc0000136.1_g000015
rosa_roxburghii Rroxscaffold_7G00209750 Rroxscaffold_7G00209760 Rroxscaffold_7G00209780 Rroxscaffold_7G00209790 Rroxscaffold_7G00209800 Rroxscaffold_7G00209810 Rroxscaffold_7G00209820 Rroxscaffold_7G00209830 Rroxscaffold_7G00209840
rosa_rugosa Rorug05G0559900 Rorug05G0560000 Rorug05G0560200 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560400 Rorug05G0560500
rosa_samantha Rh4BG250600 Rh6AG078600 Rh6AG078700 Rh6BG070800 Rh6BG071000 Rh6BG071200 Rh6BG071300 Rh6BG071600 Rh6BG071700 Rh6CG069300 Rh6CG069400 Rh6CG069700 Rh6CG069800 Rh6CG069900 Rh6DG066300 Rh6DG066400 Rh6DG066800 Rh6DG066900 Rh6DG067100 Rh6DG372200
rosa_wichuraiana Rw2G024460 Rw6G006610 Rw6G006770 Rw6G006780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 196
Acc36I ACCTGC 1 cut(s) 196
AccB1I GGYRCC 1 cut(s) 107
AccBSI CCGCTC 1 cut(s) 146
AccII CGCG 1 cut(s) 68
AciI CCGC 4 cut(s) 54, 66, 68, 144
AcoI YGGCCR 1 cut(s) 63
AfiI CCNNNNNNNGG 3 cut(s) 118, 161, 216
AgsI TTSAA 1 cut(s) 77
AluBI AGCT 2 cut(s) 104, 233
AluI AGCT 2 cut(s) 104, 233
AoxI GGCC 2 cut(s) 63, 252
ApeKI GCWGC 1 cut(s) 140
AspS9I GGNCC 2 cut(s) 219, 253
AsuC2I CCSGG 2 cut(s) 119, 175
AvaII GGWCC 1 cut(s) 219
BaeGI GKGCMC 1 cut(s) 112
BanI GGYRCC 1 cut(s) 107
BanII GRGCYC 1 cut(s) 181
BauI CACGAG 1 cut(s) 239
BbvI GCAGC 1 cut(s) 152
BccI CCATC 1 cut(s) 155
BceAI ACGGC 1 cut(s) 26
BcnI CCSGG 2 cut(s) 119, 175
BfmI CTRYAG 1 cut(s) 263
BfuAI ACCTGC 1 cut(s) 196
BisI GCNGC 3 cut(s) 66, 141, 144
BlsI GCNGC 3 cut(s) 67, 142, 145
Bme1390I CCNGG 2 cut(s) 119, 175
Bme18I GGWCC 1 cut(s) 219
BmgT120I GGNCC 2 cut(s) 219, 253
BmiI GGNNCC 5 cut(s) 109, 123, 133, 180, 220
BmrFI CCNGG 2 cut(s) 119, 175
BoxI GACNNNNGTC 1 cut(s) 56
BplI GAGNNNNNCTC 2 cut(s) 222, 254
BpmI CTGGAG 1 cut(s) 249
BpuMI CCSGG 2 cut(s) 119, 175
BsaJI CCNNGG 4 cut(s) 66, 117, 174, 222
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bsc4I CCNNNNNNNGG 3 cut(s) 118, 161, 216
BseDI CCNNGG 4 cut(s) 66, 117, 174, 222
BseLI CCNNNNNNNGG 3 cut(s) 118, 161, 216
BseSI GKGCMC 1 cut(s) 112
BseXI GCAGC 1 cut(s) 152
BsgI GTGCAG 2 cut(s) 168, 174
Bsh1236I CGCG 1 cut(s) 68
BshFI GGCC 2 cut(s) 65, 254
BshNI GGYRCC 1 cut(s) 107
BsiSI CCGG 2 cut(s) 119, 174
BslI CCNNNNNNNGG 3 cut(s) 118, 161, 216
BsnI GGCC 2 cut(s) 65, 254
Bsp1286I GDGCHC 2 cut(s) 112, 181
BspACI CCGC 4 cut(s) 54, 66, 68, 144
BspANI GGCC 2 cut(s) 65, 254
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 5 cut(s) 109, 123, 133, 180, 220
BspMAI CTGCAG 1 cut(s) 267
BspMI ACCTGC 1 cut(s) 196
BspT107I GGYRCC 1 cut(s) 107
BsrBI CCGCTC 1 cut(s) 146
BssECI CCNNGG 4 cut(s) 66, 117, 174, 222
BssSI CACGAG 1 cut(s) 239
BssT1I CCWWGG 1 cut(s) 222
Bst2BI CACGAG 1 cut(s) 239
BstDSI CCRYGG 1 cut(s) 66
BstFNI CGCG 1 cut(s) 68
BstMWI GCNNNNNNNGC 2 cut(s) 62, 101
BstPAI GACNNNNGTC 1 cut(s) 56
BstSCI CCNGG 2 cut(s) 117, 173
BstSFI CTRYAG 1 cut(s) 263
BstSLI GKGCMC 1 cut(s) 112
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 152
BsuRI GGCC 2 cut(s) 65, 254
BtgI CCRYGG 1 cut(s) 66
BveI ACCTGC 1 cut(s) 196
Cfr13I GGNCC 2 cut(s) 219, 253
Cfr42I CCGCGG 1 cut(s) 69
CviAII CATG 3 cut(s) 7, 49, 61
EaeI YGGCCR 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 222
Eco24I GRGCYC 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 219
EcoO109I RGGNCCY 1 cut(s) 219
EcoT14I CCWWGG 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 3 cut(s) 10, 52, 64
FaiI YATR 4 cut(s) 8, 50, 62, 212
FalI AAGNNNNNCTT 1 cut(s) 37
FatI CATG 3 cut(s) 6, 48, 60
Fnu4HI GCNGC 3 cut(s) 66, 141, 144
FriOI GRGCYC 1 cut(s) 181
Fsp4HI GCNGC 3 cut(s) 66, 141, 144
GluI GCNGC 3 cut(s) 66, 141, 144
GsuI CTGGAG 1 cut(s) 249
HaeIII GGCC 2 cut(s) 65, 254
HapII CCGG 2 cut(s) 119, 174
Hin1II CATG 3 cut(s) 10, 52, 64
HpaII CCGG 2 cut(s) 119, 174
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 256
HpyCH4V TGCA 4 cut(s) 48, 185, 191, 265
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 101
Hsp92II CATG 3 cut(s) 10, 52, 64
KspI CCGCGG 1 cut(s) 69
LmnI GCTCC 4 cut(s) 127, 151, 184, 230
LpnPI CCDG 8 cut(s) 90, 114, 126, 132, 187, 195, 201, 213
Lsp1109I GCAGC 1 cut(s) 152
MbiI CCGCTC 1 cut(s) 146
MboII GAAGA 2 cut(s) 22, 25
MhlI GDGCHC 2 cut(s) 112, 181
MnlI CCTC 1 cut(s) 208
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 2 cut(s) 119, 174
MspR9I CCNGG 2 cut(s) 119, 175
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 2 cut(s) 62, 101
NciI CCSGG 2 cut(s) 119, 175
NlaIII CATG 3 cut(s) 10, 52, 64
NlaIV GGNNCC 5 cut(s) 109, 123, 133, 180, 220
PaqCI CACCTGC 1 cut(s) 196
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PkrI GCNGC 3 cut(s) 67, 142, 145
PpuMI RGGWCCY 1 cut(s) 219
PshAI GACNNNNGTC 1 cut(s) 56
Psp5II RGGWCCY 1 cut(s) 219
PspN4I GGNNCC 5 cut(s) 109, 123, 133, 180, 220
PspPI GGNCC 2 cut(s) 219, 253
PspPPI RGGWCCY 1 cut(s) 219
PstI CTGCAG 1 cut(s) 267
SacII CCGCGG 1 cut(s) 69
SatI GCNGC 3 cut(s) 66, 141, 144
Sau96I GGNCC 2 cut(s) 219, 253
ScrFI CCNGG 2 cut(s) 119, 175
SduI GDGCHC 2 cut(s) 112, 181
SetI ASST 5 cut(s) 106, 133, 190, 235, 264
SfcI CTRYAG 1 cut(s) 263
Sfr303I CCGCGG 1 cut(s) 69
SgrBI CCGCGG 1 cut(s) 69
SinI GGWCC 1 cut(s) 219
SsiI CCGC 4 cut(s) 54, 66, 68, 144
StyD4I CCNGG 2 cut(s) 117, 173
StyI CCWWGG 1 cut(s) 222
TauI GCSGC 2 cut(s) 68, 146
TseI GCWGC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 23
TspGWI ACGGA 1 cut(s) 124
VpaK11BI GGWCC 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.