Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Forward (+)

637982 .. 639217

Gene Structure 1236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g01270.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGACCCGGTATTGCGATGTACTTTTCTTCATCTTCTTAAGGGAGGAGGAGAAAGATCCGACAAGGAAGAAGATGAAGAAAAGTATATCACAATACCGGGTCACATTGCCGGATATTCAACAATTCAAACAGGGCTTAGATGATGAAGTACTAGCAGAGTTGAGGAGTGGGCCGTTTGGCAAGCTCTTTGAAGCATTTCATAAAGGATTAATCAAAACGGAAGAGGCTGGAAAGTCGAAGAGGATGCTTTCGTTGATGATATTTTGCCGTGTGCGACCATTGTTAGGTGAAAATGCCACTGAAGATTCAGTCATTTCATATCCTACTTCAACAGAGACCCTAGGTCGTGGCATTGACATAGTAAAGGCTGGGAACAAACATCACTTTGTGTTTGACGAAGTTTTTGATCATGAGGCAACACAACATCATGTTTATGTAGAAATATCGCAACTTGTACAAAGTGTACTTGCTGGATACAAAAGTCATGAAGACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000280 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0005871 GO:0005872 GO:0005874 GO:0005875 GO:0005876 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007053 GO:0007140 GO:0007276 GO:0008150 GO:0008569 GO:0009524 GO:0009971 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0032501 GO:0032504 GO:0032991 GO:0042623 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0048232 GO:0048285 GO:0048609 GO:0051225 GO:0051321 GO:0051704 GO:0055048 GO:0070925 GO:0071840 GO:0090306 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140013 GO:1903046 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

166

Amino Acids

19.05

Weight (kDa)

6.38

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Microtub_bd	PF16796	87 - 160	8.4e-09	Microtubule binding
Kinesin	PF00225	90 - 160	4.2e-08	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	50
AcuI	CTGAAG	1 cut(s)	321
AdeI	CACNNNGTG	1 cut(s)	388
AfaI	GTAC	4 cut(s)	21, 150, 456, 465
AfiI	CCNNNNNNNGG	1 cut(s)	284
AflII	CTTAAG	1 cut(s)	37
AgsI	TTSAA	4 cut(s)	119, 127, 191, 330
AhdI	GACNNNNNGTC	1 cut(s)	342
AluBI	AGCT	1 cut(s)	184
AluI	AGCT	1 cut(s)	184
Alw26I	GTCTC	1 cut(s)	329
AlwI	GGATC	1 cut(s)	50
AoxI	GGCC	1 cut(s)	170
ArsI	GACNNNNNNTTYG	2 cut(s)	386, 418
AseI	ATTAAT	1 cut(s)	209
Asp700I	GAANNNNTTC	1 cut(s)	195
AspA2I	CCTAGG	1 cut(s)	340
AspS9I	GGNCC	1 cut(s)	170
AsuC2I	CCSGG	2 cut(s)	7, 98
AsuHPI	GGTGA	1 cut(s)	299
AvrII	CCTAGG	1 cut(s)	340
BaeI	ACNNNNGTAYC	1 cut(s)	466
BceAI	ACGGC	2 cut(s)	157, 252
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BciVI	GTATCC	1 cut(s)	467
BclI	TGATCA	1 cut(s)	406
BcnI	CCSGG	2 cut(s)	7, 98
BcoDI	GTCTC	1 cut(s)	329
BfaI	CTAG	2 cut(s)	152, 341
BfrI	CTTAAG	1 cut(s)	37
BfuI	GTATCC	1 cut(s)	467
BlnI	CCTAGG	1 cut(s)	340
BmcAI	AGTACT	1 cut(s)	150
Bme1390I	CCNGG	2 cut(s)	7, 98
BmeRI	GACNNNNNGTC	1 cut(s)	342
BmgT120I	GGNCC	1 cut(s)	170
BmrFI	CCNGG	2 cut(s)	7, 98
BmsI	GCATC	1 cut(s)	234
BpuMI	CCSGG	2 cut(s)	7, 98
BsaI	GGTCTC	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse3DI	GCAATG	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	340
BseGI	GGATG	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseMI	GCAATG	1 cut(s)	104
BseRI	GAGGAG	3 cut(s)	59, 62, 178
BseYI	CCCAGC	1 cut(s)	368
BshFI	GGCC	1 cut(s)	172
BsiSI	CCGG	3 cut(s)	7, 97, 110
BslI	CCNNNNNNNGG	1 cut(s)	284
BsmAI	GTCTC	1 cut(s)	329
BsnI	GGCC	1 cut(s)	172
Bso31I	GGTCTC	1 cut(s)	329
Bsp1407I	TGTACA	1 cut(s)	454
Bsp143I	GATC	2 cut(s)	55, 406
BspANI	GGCC	1 cut(s)	172
BspHI	TCATGA	2 cut(s)	409, 484
BspPI	GGATC	1 cut(s)	50
BspTI	CTTAAG	1 cut(s)	37
BspTNI	GGTCTC	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	104
BsrGI	TGTACA	1 cut(s)	454
BssECI	CCNNGG	1 cut(s)	340
BssMI	GATC	2 cut(s)	55, 406
BssT1I	CCWWGG	1 cut(s)	340
Bst6I	CTCTTC	2 cut(s)	216, 233
BstAFI	CTTAAG	1 cut(s)	37
BstAUI	TGTACA	1 cut(s)	454
BstC8I	GCNNGC	1 cut(s)	182
BstDEI	CTNAG	1 cut(s)	136
BstF5I	GGATG	1 cut(s)	249
BstKTI	GATC	2 cut(s)	58, 409
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	2 cut(s)	55, 406
BstSCI	CCNGG	2 cut(s)	5, 96
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BsuI	GTATCC	1 cut(s)	467
BsuRI	GGCC	1 cut(s)	172
BtgZI	GCGATG	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	249
BtsIMutI	CAGTG	1 cut(s)	297
Cac8I	GCNNGC	1 cut(s)	182
CciI	TCATGA	2 cut(s)	409, 484
Cfr13I	GGNCC	1 cut(s)	170
Csp6I	GTAC	4 cut(s)	20, 149, 455, 464
CviAII	CATG	3 cut(s)	410, 428, 485
CviJI	RGCY	5 cut(s)	135, 172, 184, 227, 368
CviKI_1	RGCY	5 cut(s)	135, 172, 184, 227, 368
CviQI	GTAC	4 cut(s)	20, 149, 455, 464
DdeI	CTNAG	1 cut(s)	136
DpnI	GATC	2 cut(s)	57, 408
DpnII	GATC	2 cut(s)	55, 406
DraIII	CACNNNGTG	1 cut(s)	388
DriI	GACNNNNNGTC	1 cut(s)	342
Eam1104I	CTCTTC	2 cut(s)	216, 233
Eam1105I	GACNNNNNGTC	1 cut(s)	342
EarI	CTCTTC	2 cut(s)	216, 233
Eco130I	CCWWGG	1 cut(s)	340
Eco31I	GGTCTC	1 cut(s)	329
Eco57I	CTGAAG	1 cut(s)	321
EcoT14I	CCWWGG	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	340
FaeI	CATG	3 cut(s)	413, 431, 488
FaiI	YATR	8 cut(s)	86, 201, 319, 359, 411, 429, 435, 486
FatI	CATG	3 cut(s)	409, 427, 484
FbaI	TGATCA	1 cut(s)	406
FokI	GGATG	1 cut(s)	256
FspBI	CTAG	2 cut(s)	152, 341
GsaI	CCCAGC	1 cut(s)	372
HaeIII	GGCC	1 cut(s)	172
HapII	CCGG	3 cut(s)	7, 97, 110
Hin1II	CATG	3 cut(s)	413, 431, 488
HinfI	GANTC	1 cut(s)	305
HpaII	CCGG	3 cut(s)	7, 97, 110
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	1 cut(s)	464
Hpy188I	TCNGA	1 cut(s)	60
Hpy188III	TCNNGA	2 cut(s)	410, 485
Hpy8I	GTNNAC	1 cut(s)	464
HpyF3I	CTNAG	1 cut(s)	136
Hsp92II	CATG	3 cut(s)	413, 431, 488
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	2 cut(s)	55, 406
LpnPI	CCDG	7 cut(s)	20, 110, 116, 123, 213, 354, 456
LweI	GCATC	1 cut(s)	234
MaeI	CTAG	2 cut(s)	152, 341
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	2 cut(s)	57, 408
MboI	GATC	2 cut(s)	55, 406
MboII	GAAGA	8 cut(s)	19, 25, 79, 82, 88, 233, 250, 314
MflI	RGATCY	1 cut(s)	55
MluCI	AATT	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	83
MnlI	CCTC	6 cut(s)	37, 40, 156, 217, 234, 406
MroXI	GAANNNNTTC	1 cut(s)	195
MseI	TTAA	2 cut(s)	38, 209
MslI	CAYNNNNRTG	1 cut(s)	432
MspCI	CTTAAG	1 cut(s)	37
MspI	CCGG	3 cut(s)	7, 97, 110
MspR9I	CCNGG	2 cut(s)	7, 98
NciI	CCSGG	2 cut(s)	7, 98
NdeII	GATC	2 cut(s)	55, 406
NlaIII	CATG	3 cut(s)	413, 431, 488
NmuCI	GTSAC	1 cut(s)	100
PagI	TCATGA	2 cut(s)	409, 484
PdmI	GAANNNNTTC	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	305
PshBI	ATTAAT	1 cut(s)	209
PspFI	CCCAGC	1 cut(s)	368
PspPI	GGNCC	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	55
RsaI	GTAC	4 cut(s)	21, 150, 456, 465
RsaNI	GTAC	4 cut(s)	20, 149, 455, 464
RseI	CAYNNNNRTG	1 cut(s)	432
SaqAI	TTAA	2 cut(s)	38, 209
Sau3AI	GATC	2 cut(s)	55, 406
Sau96I	GGNCC	1 cut(s)	170
ScaI	AGTACT	1 cut(s)	150
ScrFI	CCNGG	2 cut(s)	7, 98
SetI	ASST	3 cut(s)	186, 289, 346
SfaNI	GCATC	1 cut(s)	234
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
Sse9I	AATT	1 cut(s)	122
SspMI	CTAG	2 cut(s)	152, 341
StyD4I	CCNGG	2 cut(s)	5, 96
StyI	CCWWGG	1 cut(s)	340
TaqI	TCGA	1 cut(s)	236
TasI	AATT	1 cut(s)	122
TatI	WGTACW	4 cut(s)	19, 148, 454, 463
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	2 cut(s)	38, 209
Tru9I	TTAA	2 cut(s)	38, 209
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	5 cut(s)	19, 89, 159, 188, 306
TspGWI	ACGGA	1 cut(s)	233
TspRI	CASTG	1 cut(s)	304
Vha464I	CTTAAG	1 cut(s)	37
VspI	ATTAAT	1 cut(s)	209
XmaJI	CCTAGG	1 cut(s)	340
XmnI	GAANNNNTTC	1 cut(s)	195
XspI	CTAG	2 cut(s)	152, 341
ZrmI	AGTACT	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.