Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Reverse (-)

59854099 .. 59855176

Gene Structure 1078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G036370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAGTAGTCAGCGACTCGTCGTCTTTCTCTCTATCAATTTCTCCTCGACGGCACCCACCCTCTCCCTCTTTACTCGGTGGTTGATGGCGAGCTCTCCTCGCGACGCAGGGCATTGCATATATATAGGAGTGGTCTACTTGGTGATGATCACAGCATCGCCCAATCTAGAGGTTCACGAGCTGGATGAGCTCCCGGAGCAGTGGCGGAGGTTCAAGCTGGCTTGGCTTTGTAAGGAGCTGCCGTTGCATAATTCCTGGGCTTTGATTCGGATTCTCAATGCCCAGAAGAAGTGGATGAGGCAAGAGGATGCCAAGAACTCTGGTATTGTTAACTATAGGTCTCATTGTGAAATTATAATCATTTTCCTTCCATCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015979 GO:0016043 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019684 GO:0022607 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045292 GO:0046483 GO:0048564 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LAGLIDADG_2 PPR

Protein Analysis

126

Amino Acids

14.6

Weight (kDa)

8.93

Isoelectric Point (pI)

55.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	356
AccB1I	GGYRCC	1 cut(s)	52
AccI	GTMKAC	1 cut(s)	135
AccII	CGCG	1 cut(s)	102
AciI	CCGC	1 cut(s)	205
AgsI	TTSAA	1 cut(s)	214
AhdI	GACNNNNNGTC	1 cut(s)	20
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	5 cut(s)	93, 181, 190, 217, 238
AluI	AGCT	5 cut(s)	93, 181, 190, 217, 238
Alw21I	GWGCWC	2 cut(s)	95, 192
Alw26I	GTCTC	1 cut(s)	345
ApeKI	GCWGC	1 cut(s)	238
AsuC2I	CCSGG	1 cut(s)	194
AsuHPI	GGTGA	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	52
BanII	GRGCYC	2 cut(s)	95, 192
BauI	CACGAG	1 cut(s)	176
Bbv12I	GWGCWC	2 cut(s)	95, 192
BbvI	GCAGC	1 cut(s)	225
BccI	CCATC	2 cut(s)	79, 379
BceAI	ACGGC	2 cut(s)	66, 226
BciT130I	CCWGG	1 cut(s)	256
BclI	TGATCA	1 cut(s)	147
BcnI	CCSGG	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	345
BfaI	CTAG	1 cut(s)	167
BfmI	CTRYAG	1 cut(s)	334
BisI	GCNGC	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	240
Bme1390I	CCNGG	2 cut(s)	194, 256
BmeRI	GACNNNNNGTC	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	54
BmrFI	CCNGG	2 cut(s)	194, 256
BmsI	GCATC	2 cut(s)	164, 298
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
BpuMI	CCSGG	1 cut(s)	194
BsaI	GGTCTC	1 cut(s)	345
BsaJI	CCNNGG	1 cut(s)	255
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bse3DI	GCAATG	1 cut(s)	112
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	3 cut(s)	190, 300, 313
BseMI	GCAATG	1 cut(s)	112
BseRI	GAGGAG	2 cut(s)	34, 87
BseXI	GCAGC	1 cut(s)	225
Bsh1236I	CGCG	1 cut(s)	102
BshNI	GGYRCC	1 cut(s)	52
BsiHKAI	GWGCWC	2 cut(s)	95, 192
BsiSI	CCGG	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	345
Bso31I	GGTCTC	1 cut(s)	345
Bsp1286I	GDGCHC	2 cut(s)	95, 192
Bsp143I	GATC	1 cut(s)	147
Bsp68I	TCGCGA	1 cut(s)	102
BspACI	CCGC	1 cut(s)	205
BspFNI	CGCG	1 cut(s)	102
BspLI	GGNNCC	1 cut(s)	54
BspT107I	GGYRCC	1 cut(s)	52
BspTNI	GGTCTC	1 cut(s)	345
BsrDI	GCAATG	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	1 cut(s)	147
BssSI	CACGAG	1 cut(s)	176
Bst2BI	CACGAG	1 cut(s)	176
Bst2UI	CCWGG	1 cut(s)	256
BstC8I	GCNNGC	2 cut(s)	91, 219
BstF5I	GGATG	3 cut(s)	190, 300, 313
BstFNI	CGCG	1 cut(s)	102
BstKTI	GATC	1 cut(s)	150
BstMAI	GTCTC	1 cut(s)	345
BstMBI	GATC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	5 cut(s)	99, 187, 196, 223, 244
BstNI	CCWGG	1 cut(s)	256
BstSCI	CCNGG	2 cut(s)	192, 254
BstSFI	CTRYAG	1 cut(s)	334
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	225
BtgZI	GCGATG	1 cut(s)	141
BtsCI	GGATG	3 cut(s)	190, 300, 313
BtsI	GCAGTG	1 cut(s)	206
BtsIMutI	CAGTG	1 cut(s)	206
BtuMI	TCGCGA	1 cut(s)	102
Cac8I	GCNNGC	2 cut(s)	91, 219
CseI	GACGC	1 cut(s)	113
CviJI	RGCY	8 cut(s)	93, 181, 190, 217, 221, 226, 238, 260
CviKI_1	RGCY	8 cut(s)	93, 181, 190, 217, 221, 226, 238, 260
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
DriI	GACNNNNNGTC	1 cut(s)	20
Eam1105I	GACNNNNNGTC	1 cut(s)	20
EciI	GGCGGA	1 cut(s)	220
Ecl136II	GAGCTC	2 cut(s)	93, 190
Eco24I	GRGCYC	2 cut(s)	95, 192
Eco31I	GGTCTC	1 cut(s)	345
Eco53kI	GAGCTC	2 cut(s)	93, 190
EcoICRI	GAGCTC	2 cut(s)	93, 190
EcoRII	CCWGG	1 cut(s)	254
EcoT38I	GRGCYC	2 cut(s)	95, 192
FaiI	YATR	7 cut(s)	119, 121, 123, 125, 249, 336, 356
FbaI	TGATCA	1 cut(s)	147
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	1 cut(s)	239
FokI	GGATG	3 cut(s)	197, 307, 320
FriOI	GRGCYC	2 cut(s)	95, 192
Fsp4HI	GCNGC	1 cut(s)	239
FspBI	CTAG	1 cut(s)	167
GluI	GCNGC	1 cut(s)	239
HapII	CCGG	1 cut(s)	194
HgaI	GACGC	1 cut(s)	113
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HinfI	GANTC	3 cut(s)	15, 265, 271
HpaI	GTTAAC	1 cut(s)	331
HpaII	CCGG	1 cut(s)	194
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	3 cut(s)	136, 175, 331
Hpy188I	TCNGA	1 cut(s)	270
Hpy188III	TCNNGA	3 cut(s)	101, 167, 176
Hpy8I	GTNNAC	3 cut(s)	136, 175, 331
Hpy99I	CGWCG	3 cut(s)	23, 52, 107
HpyAV	CCTTC	1 cut(s)	377
HpyCH4V	TGCA	2 cut(s)	117, 247
HpyF10VI	GCNNNNNNNGC	5 cut(s)	99, 187, 196, 223, 244
Ksp22I	TGATCA	1 cut(s)	147
KspAI	GTTAAC	1 cut(s)	331
Kzo9I	GATC	1 cut(s)	147
LmnI	GCTCC	3 cut(s)	195, 196, 235
LpnPI	CCDG	8 cut(s)	93, 167, 203, 207, 241, 268, 296, 306
Lsp1109I	GCAGC	1 cut(s)	225
LweI	GCATC	2 cut(s)	164, 298
MaeI	CTAG	1 cut(s)	167
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MboII	GAAGA	1 cut(s)	298
MhlI	GDGCHC	2 cut(s)	95, 192
MluCI	AATT	3 cut(s)	37, 250, 351
MlyI	GAGTC	1 cut(s)	9
MnlI	CCTC	8 cut(s)	55, 71, 77, 108, 163, 201, 291, 298
MseI	TTAA	2 cut(s)	330, 379
MspI	CCGG	1 cut(s)	194
MspR9I	CCNGG	2 cut(s)	194, 256
MvaI	CCWGG	1 cut(s)	256
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	5 cut(s)	99, 187, 196, 223, 244
NciI	CCSGG	1 cut(s)	194
NdeII	GATC	1 cut(s)	147
NlaIV	GGNNCC	1 cut(s)	54
NruI	TCGCGA	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	265, 271
PfoI	TCCNGGA	1 cut(s)	192
PkrI	GCNGC	1 cut(s)	240
PleI	GAGTC	1 cut(s)	9
PpsI	GAGTC	1 cut(s)	9
PsiI	TTATAA	1 cut(s)	356
Psp124BI	GAGCTC	2 cut(s)	95, 192
Psp6I	CCWGG	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	54
RruI	TCGCGA	1 cut(s)	102
SacI	GAGCTC	2 cut(s)	95, 192
SaqAI	TTAA	2 cut(s)	330, 379
SatI	GCNGC	1 cut(s)	239
Sau3AI	GATC	1 cut(s)	147
SchI	GAGTC	1 cut(s)	9
ScrFI	CCNGG	2 cut(s)	194, 256
SduI	GDGCHC	2 cut(s)	95, 192
SetI	ASST	8 cut(s)	95, 174, 183, 192, 212, 219, 240, 341
SfaNI	GCATC	2 cut(s)	164, 298
SfcI	CTRYAG	1 cut(s)	334
Sse9I	AATT	3 cut(s)	37, 250, 351
SsiI	CCGC	1 cut(s)	205
SspMI	CTAG	1 cut(s)	167
SstI	GAGCTC	2 cut(s)	95, 192
StyD4I	CCNGG	2 cut(s)	192, 254
TaqI	TCGA	1 cut(s)	47
TasI	AATT	3 cut(s)	37, 250, 351
TfiI	GAWTC	2 cut(s)	265, 271
Tru1I	TTAA	2 cut(s)	330, 379
Tru9I	TTAA	2 cut(s)	330, 379
TscAI	CASTG	1 cut(s)	206
TseI	GCWGC	1 cut(s)	238
TspRI	CASTG	1 cut(s)	206
XbaI	TCTAGA	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.