Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000092.1

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Reverse (-)

20552 .. 21333

Gene Structure 782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000092.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgggagagtcagaaacctcagcagacaaagaagcagacggaggcgttcagcctaaaacggaggcggggatgagccggaaggagaagtggaaagccatgaagaagatgaagcggaagcagacgcggaaggaaatcactctcaaagagcgtcaggaagaagaggcgaggccccaagatcctcaagagcttatcaacatggagcaagaggaggccaagaggtccgagagtgtgaggatcttgttcgaggagcgagagagagcttggattgaagccatggagattcgaaagaggaaacgaatcgaacaagaagaagaggagcgtagaattaaggatctggaagacgaagcactatttcgcaagcaacagatcaaaaatgcaaatgatgatggtgatgatgactgggagtatgtagaagagggacctgctgaaatcatctggaaggaaaatgaagtaattgtcaagaagaaaaagtcaaggttccaaagaggaataaagactagcaaagtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030628 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

169

Amino Acids

20.24

Weight (kDa)

5.69

Isoelectric Point (pI)

75.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	430
AccII	CGCG	1 cut(s)	124
AciI	CCGC	3 cut(s)	65, 112, 124
AclWI	GGATC	3 cut(s)	170, 242, 339
AgsI	TTSAA	1 cut(s)	269
AluBI	AGCT	2 cut(s)	187, 260
AluI	AGCT	2 cut(s)	187, 260
AlwI	GGATC	3 cut(s)	170, 242, 339
AoxI	GGCC	2 cut(s)	167, 210
AspS9I	GGNCC	3 cut(s)	168, 219, 419
AsuHPI	GGTGA	1 cut(s)	401
AsuII	TTCGAA	1 cut(s)	283
AvaII	GGWCC	2 cut(s)	219, 419
BbsI	GAAGAC	1 cut(s)	345
BbvCI	CCTCAGC	1 cut(s)	19
BccI	CCATC	1 cut(s)	380
BfaI	CTAG	1 cut(s)	498
BfuAI	ACCTGC	1 cut(s)	430
Bme18I	GGWCC	2 cut(s)	219, 419
BmgT120I	GGNCC	3 cut(s)	168, 219, 419
BmiI	GGNNCC	3 cut(s)	170, 420, 479
BmrI	ACTGGG	1 cut(s)	409
BmuI	ACTGGG	1 cut(s)	409
BpiI	GAAGAC	1 cut(s)	345
Bpu10I	CCTNAGC	1 cut(s)	19
Bpu14I	TTCGAA	1 cut(s)	283
BpuEI	CTTGAG	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	273
Bse1I	ACTGG	1 cut(s)	404
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	404
BseRI	GAGGAG	3 cut(s)	221, 260, 329
Bsh1236I	CGCG	1 cut(s)	124
BshFI	GGCC	2 cut(s)	169, 212
BsiSI	CCGG	1 cut(s)	76
BslFI	GGGAC	1 cut(s)	432
BsmFI	GGGAC	1 cut(s)	432
BsnI	GGCC	2 cut(s)	169, 212
Bsp119I	TTCGAA	1 cut(s)	283
Bsp143I	GATC	4 cut(s)	175, 234, 331, 366
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	3 cut(s)	65, 112, 124
BspANI	GGCC	2 cut(s)	169, 212
BspCNI	CTCAG	1 cut(s)	32
BspFNI	CGCG	1 cut(s)	124
BspLI	GGNNCC	3 cut(s)	170, 420, 479
BspMI	ACCTGC	1 cut(s)	430
BspPI	GGATC	3 cut(s)	170, 242, 339
BspT104I	TTCGAA	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	404
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	4 cut(s)	175, 234, 331, 366
BssT1I	CCWWGG	1 cut(s)	273
Bst6I	CTCTTC	3 cut(s)	153, 306, 408
BstBI	TTCGAA	1 cut(s)	283
BstC8I	GCNNGC	1 cut(s)	359
BstDEI	CTNAG	1 cut(s)	19
BstDSI	CCRYGG	1 cut(s)	273
BstF5I	GGATG	1 cut(s)	75
BstFNI	CGCG	1 cut(s)	124
BstKTI	GATC	4 cut(s)	178, 237, 334, 369
BstMBI	GATC	4 cut(s)	175, 234, 331, 366
BstUI	CGCG	1 cut(s)	124
BstV2I	GAAGAC	1 cut(s)	345
BstX2I	RGATCY	3 cut(s)	175, 234, 331
BstYI	RGATCY	3 cut(s)	175, 234, 331
BsuRI	GGCC	2 cut(s)	169, 212
BtgI	CCRYGG	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	75
BveI	ACCTGC	1 cut(s)	430
Cac8I	GCNNGC	1 cut(s)	359
Cfr13I	GGNCC	3 cut(s)	168, 219, 419
CseI	GACGC	2 cut(s)	130, 137
CviAII	CATG	3 cut(s)	97, 196, 274
CviJI	RGCY	8 cut(s)	52, 75, 95, 169, 187, 212, 260, 272
CviKI_1	RGCY	8 cut(s)	52, 75, 95, 169, 187, 212, 260, 272
DdeI	CTNAG	1 cut(s)	19
DpnI	GATC	4 cut(s)	177, 236, 333, 368
DpnII	GATC	4 cut(s)	175, 234, 331, 366
Eam1104I	CTCTTC	3 cut(s)	153, 306, 408
EarI	CTCTTC	3 cut(s)	153, 306, 408
Eco130I	CCWWGG	1 cut(s)	273
Eco47I	GGWCC	2 cut(s)	219, 419
EcoO109I	RGGNCCY	2 cut(s)	168, 419
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	3 cut(s)	100, 199, 277
FaiI	YATR	5 cut(s)	98, 197, 275, 408, 508
FaqI	GGGAC	1 cut(s)	432
FatI	CATG	3 cut(s)	96, 195, 273
FauI	CCCGC	1 cut(s)	58
FokI	GGATG	1 cut(s)	82
FspBI	CTAG	1 cut(s)	498
HaeIII	GGCC	2 cut(s)	169, 212
HapII	CCGG	1 cut(s)	76
HgaI	GACGC	2 cut(s)	130, 137
Hin1II	CATG	3 cut(s)	100, 199, 277
HinfI	GANTC	3 cut(s)	8, 280, 297
HpaII	CCGG	1 cut(s)	76
HphI	GGTGA	1 cut(s)	401
Hpy188I	TCNGA	2 cut(s)	13, 223
Hpy188III	TCNNGA	5 cut(s)	152, 182, 335, 436, 460
HpyAV	CCTTC	3 cut(s)	73, 121, 433
HpyCH4V	TGCA	1 cut(s)	377
HpyF3I	CTNAG	1 cut(s)	19
Hsp92II	CATG	3 cut(s)	100, 199, 277
Kzo9I	GATC	4 cut(s)	175, 234, 331, 366
LmnI	GCTCC	3 cut(s)	199, 247, 316
LpnPI	CCDG	6 cut(s)	89, 137, 320, 385, 421, 435
MaeI	CTAG	1 cut(s)	498
MalI	GATC	4 cut(s)	177, 236, 333, 368
MboI	GATC	4 cut(s)	175, 234, 331, 366
MboII	GAAGA	9 cut(s)	112, 115, 167, 170, 320, 323, 350, 425, 475
MflI	RGATCY	3 cut(s)	175, 234, 331
MluCI	AATT	2 cut(s)	324, 453
MlyI	GAGTC	1 cut(s)	17
MseI	TTAA	1 cut(s)	327
MspI	CCGG	1 cut(s)	76
MvnI	CGCG	1 cut(s)	124
NcoI	CCATGG	1 cut(s)	273
NdeII	GATC	4 cut(s)	175, 234, 331, 366
NlaIII	CATG	3 cut(s)	100, 199, 277
NlaIV	GGNNCC	3 cut(s)	170, 420, 479
NspV	TTCGAA	1 cut(s)	283
PfeI	GAWTC	2 cut(s)	280, 297
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PpuMI	RGGWCCY	1 cut(s)	419
Psp5II	RGGWCCY	1 cut(s)	419
PspN4I	GGNNCC	3 cut(s)	170, 420, 479
PspPI	GGNCC	3 cut(s)	168, 219, 419
PspPPI	RGGWCCY	1 cut(s)	419
PsuI	RGATCY	3 cut(s)	175, 234, 331
SaqAI	TTAA	1 cut(s)	327
Sau3AI	GATC	4 cut(s)	175, 234, 331, 366
Sau96I	GGNCC	3 cut(s)	168, 219, 419
SchI	GAGTC	1 cut(s)	17
SetI	ASST	6 cut(s)	20, 189, 221, 262, 424, 479
SfuI	TTCGAA	1 cut(s)	283
SinI	GGWCC	2 cut(s)	219, 419
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
Sse9I	AATT	2 cut(s)	324, 453
SsiI	CCGC	3 cut(s)	65, 112, 124
SspMI	CTAG	1 cut(s)	498
StyI	CCWWGG	1 cut(s)	273
TaqI	TCGA	3 cut(s)	243, 283, 300
TasI	AATT	2 cut(s)	324, 453
TfiI	GAWTC	2 cut(s)	280, 297
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TspDTI	ATGAA	3 cut(s)	113, 122, 462
TspGWI	ACGGA	2 cut(s)	54, 74
VpaK11BI	GGWCC	2 cut(s)	219, 419
XspI	CTAG	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.