Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Forward (+)

26258106 .. 26259966

Gene Structure 1861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g24740.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGAGTCGGCGCTGGCTGAAGCAGCAGCAAAAGAAGGAGAAGCAGTAGGAGGAGGTATTGAGCCCAGAACGGAGCCTTTGGGAGAGGAGAAAGGGATGACGAATATGAAGGAGAAGAGGAAAGCGATGAAGAAGATGAAGAGAAAGCAGACGAGGAAGGAGATGGCGCTGAAAGAGCGAGAGGAACATGACGCCATTCTCAACGATCCTCTAGAGCTTGCGAAGATTACGATGATCGAGCAAGAGGAGGCCGAGCGGTCGGAAAGAGAAAGGAAGATTTTCGAGGAGCGAGAGACGGCGTGGATCGAAGCCATGGAGGTTAAGAGGAAGAAACAAATCGAAGAAGAAGAGGAGGAAGAACGAACAAGAATCAAGGCTCGTGAGGAAGAAGACGAATTGTCTCGGAATCAACAGGTCGGAAATGAAAATGACGGTAATGAGGTTGATGAGTGGGACTATGAAGAAGGACCTGCTGAAATTATCTGGCAAGGAAATGAGATAATTCTCAAGAAGAAAAGGGTCAAGATTCCTAAGAAAACCAAGGACCAAGAAGGTAGAAAGGATTCTGATAGGCCTACGTCAAATCCTCTCCCTCCACAATCTGAAGCTTTTTCTGATTATAAAAGTTCATCAATGTCAGCACAGCAGCTGATTGAGAGTGTTGCTCAACAAGTACCCCATTTTGGAACTGAACAGGATAAAGCTCATTGCCCTTTCCATTTGAAAACTGGAGCTTGTCGGTTTGGTCAGCGTTGTAGCAGAGTGCATTTCTGTCCTGATAAATCTTCCACACTGCTTATCAAGAACATGTACAATGGTCCCGGCCTTGCTTGGGAGCAGGATGAGGGGCTCGAGGTCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030628 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

288

Amino Acids

33.06

Weight (kDa)

5.18

Isoelectric Point (pI)

61.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	621
Acc36I	ACCTGC	1 cut(s)	478
AccBSI	CCGCTC	1 cut(s)	256
AciI	CCGC	1 cut(s)	256
AclWI	GGATC	2 cut(s)	200, 311
AcuI	CTGAAG	2 cut(s)	39, 624
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	2 cut(s)	675, 812
AfiI	CCNNNNNNNGG	2 cut(s)	683, 832
AflIII	ACRYGT	1 cut(s)	807
AgsI	TTSAA	1 cut(s)	724
AhdI	GACNNNNNGTC	1 cut(s)	397
AluBI	AGCT	5 cut(s)	217, 608, 649, 704, 734
AluI	AGCT	5 cut(s)	217, 608, 649, 704, 734
Alw26I	GTCTC	2 cut(s)	287, 405
AlwI	GGATC	2 cut(s)	200, 311
AlwNI	CAGNNNCTG	1 cut(s)	649
Ama87I	CYCGRG	1 cut(s)	851
AoxI	GGCC	3 cut(s)	249, 572, 823
ApeKI	GCWGC	3 cut(s)	23, 26, 646
Asp700I	GAANNNNTTC	2 cut(s)	278, 562
AspLEI	GCGC	2 cut(s)	13, 169
AspS9I	GGNCC	3 cut(s)	467, 544, 818
AsuC2I	CCSGG	1 cut(s)	822
AvaI	CYCGRG	1 cut(s)	851
AvaII	GGWCC	3 cut(s)	467, 544, 818
BanII	GRGCYC	2 cut(s)	66, 852
BauI	CACGAG	1 cut(s)	378
BbsI	GAAGAC	1 cut(s)	396
BbvI	GCAGC	3 cut(s)	35, 38, 658
BccI	CCATC	1 cut(s)	157
BceAI	ACGGC	1 cut(s)	312
BcnI	CCSGG	1 cut(s)	822
BcoDI	GTCTC	2 cut(s)	287, 405
BfaI	CTAG	1 cut(s)	212
BfoI	RGCGCY	2 cut(s)	14, 170
BfuAI	ACCTGC	1 cut(s)	478
BisI	GCNGC	3 cut(s)	24, 27, 647
BlsI	GCNGC	3 cut(s)	25, 28, 648
Bme1390I	CCNGG	1 cut(s)	822
Bme18I	GGWCC	3 cut(s)	467, 544, 818
BmeRI	GACNNNNNGTC	1 cut(s)	397
BmeT110I	CYCGRG	1 cut(s)	851
BmgT120I	GGNCC	3 cut(s)	467, 544, 818
BmiI	GGNNCC	2 cut(s)	75, 820
BmrFI	CCNGG	1 cut(s)	822
BpiI	GAAGAC	1 cut(s)	396
BplI	GAGNNNNNCTC	2 cut(s)	649, 681
BpmI	CTGGAG	1 cut(s)	750
BpuEI	CTTGAG	1 cut(s)	491
BpuMI	CCSGG	1 cut(s)	822
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	2 cut(s)	312, 540
BsaXI	ACNNNNNCTCC	2 cut(s)	30, 60
Bsc4I	CCNNNNNNNGG	2 cut(s)	683, 832
Bse1I	ACTGG	1 cut(s)	733
Bse3DI	GCAATG	1 cut(s)	706
BseDI	CCNNGG	2 cut(s)	312, 540
BseGI	GGATG	2 cut(s)	102, 847
BseLI	CCNNNNNNNGG	2 cut(s)	683, 832
BseMI	GCAATG	1 cut(s)	706
BseNI	ACTGG	1 cut(s)	733
BseRI	GAGGAG	5 cut(s)	66, 101, 260, 299, 365
BseXI	GCAGC	3 cut(s)	35, 38, 658
Bsh1285I	CGRYCG	1 cut(s)	260
BshFI	GGCC	3 cut(s)	251, 574, 825
BsiEI	CGRYCG	1 cut(s)	260
BsiHKCI	CYCGRG	1 cut(s)	851
BsiSI	CCGG	1 cut(s)	822
BslFI	GGGAC	2 cut(s)	467, 804
BslI	CCNNNNNNNGG	2 cut(s)	683, 832
BsmAI	GTCTC	2 cut(s)	287, 405
BsmBI	CGTCTC	1 cut(s)	287
BsmFI	GGGAC	2 cut(s)	467, 804
BsnI	GGCC	3 cut(s)	251, 574, 825
BsoBI	CYCGRG	1 cut(s)	851
Bsp1286I	GDGCHC	2 cut(s)	66, 852
Bsp1407I	TGTACA	1 cut(s)	810
Bsp143I	GATC	3 cut(s)	205, 234, 303
Bsp19I	CCATGG	1 cut(s)	312
BspACI	CCGC	1 cut(s)	256
BspANI	GGCC	3 cut(s)	251, 574, 825
BspLI	GGNNCC	2 cut(s)	75, 820
BspMI	ACCTGC	1 cut(s)	478
BspPI	GGATC	2 cut(s)	200, 311
BsrBI	CCGCTC	1 cut(s)	256
BsrDI	GCAATG	1 cut(s)	706
BsrGI	TGTACA	1 cut(s)	810
BsrI	ACTGG	1 cut(s)	733
BssECI	CCNNGG	2 cut(s)	312, 540
BssMI	GATC	3 cut(s)	205, 234, 303
BssNI	GRCGYC	1 cut(s)	192
BssSI	CACGAG	1 cut(s)	378
BssT1I	CCWWGG	2 cut(s)	312, 540
Bst2BI	CACGAG	1 cut(s)	378
Bst4CI	ACNGT	1 cut(s)	434
Bst6I	CTCTTC	3 cut(s)	110, 134, 342
BstACI	GRCGYC	1 cut(s)	192
BstAUI	TGTACA	1 cut(s)	810
BstC8I	GCNNGC	2 cut(s)	15, 219
BstDEI	CTNAG	1 cut(s)	531
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	2 cut(s)	102, 847
BstH2I	RGCGCY	2 cut(s)	14, 170
BstHHI	GCGC	2 cut(s)	13, 169
BstKTI	GATC	3 cut(s)	208, 237, 306
BstMAI	GTCTC	2 cut(s)	287, 405
BstMBI	GATC	3 cut(s)	205, 234, 303
BstMCI	CGRYCG	1 cut(s)	260
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 175
BstNSI	RCATGY	1 cut(s)	811
BstSCI	CCNGG	1 cut(s)	820
BstV1I	GCAGC	3 cut(s)	35, 38, 658
BstV2I	GAAGAC	1 cut(s)	396
BsuRI	GGCC	3 cut(s)	251, 574, 825
BtgI	CCRYGG	1 cut(s)	312
BtgZI	GCGATG	1 cut(s)	140
BtsCI	GGATG	2 cut(s)	102, 847
BtsI	GCAGTG	1 cut(s)	791
BtsIMutI	CAGTG	1 cut(s)	791
BveI	ACCTGC	1 cut(s)	478
Cac8I	GCNNGC	2 cut(s)	15, 219
CaiI	CAGNNNCTG	1 cut(s)	649
CfoI	GCGC	2 cut(s)	13, 169
Cfr13I	GGNCC	3 cut(s)	467, 544, 818
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	2 cut(s)	674, 811
CviAII	CATG	3 cut(s)	188, 313, 808
CviQI	GTAC	2 cut(s)	674, 811
DdeI	CTNAG	1 cut(s)	531
DpnI	GATC	3 cut(s)	207, 236, 305
DpnII	GATC	3 cut(s)	205, 234, 303
DriI	GACNNNNNGTC	1 cut(s)	397
Eam1104I	CTCTTC	3 cut(s)	110, 134, 342
Eam1105I	GACNNNNNGTC	1 cut(s)	397
EarI	CTCTTC	3 cut(s)	110, 134, 342
Eco130I	CCWWGG	2 cut(s)	312, 540
Eco147I	AGGCCT	1 cut(s)	574
Eco24I	GRGCYC	2 cut(s)	66, 852
Eco47I	GGWCC	3 cut(s)	467, 544, 818
Eco57I	CTGAAG	2 cut(s)	39, 624
Eco88I	CYCGRG	1 cut(s)	851
EcoO109I	RGGNCCY	1 cut(s)	467
EcoT14I	CCWWGG	2 cut(s)	312, 540
EcoT38I	GRGCYC	2 cut(s)	66, 852
ErhI	CCWWGG	2 cut(s)	312, 540
Esp3I	CGTCTC	1 cut(s)	287
FaeI	CATG	3 cut(s)	191, 316, 811
FaiI	YATR	6 cut(s)	107, 189, 314, 459, 621, 809
FaqI	GGGAC	2 cut(s)	467, 804
FatI	CATG	3 cut(s)	187, 312, 807
Fnu4HI	GCNGC	3 cut(s)	24, 27, 647
FokI	GGATG	2 cut(s)	109, 854
FriOI	GRGCYC	2 cut(s)	66, 852
Fsp4HI	GCNGC	3 cut(s)	24, 27, 647
FspBI	CTAG	1 cut(s)	212
GlaI	GCGC	2 cut(s)	12, 168
GluI	GCNGC	3 cut(s)	24, 27, 647
GsuI	CTGGAG	1 cut(s)	750
HaeII	RGCGCY	2 cut(s)	14, 170
HaeIII	GGCC	3 cut(s)	251, 574, 825
HapII	CCGG	1 cut(s)	822
HgaI	GACGC	1 cut(s)	200
HhaI	GCGC	2 cut(s)	13, 169
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	3 cut(s)	191, 316, 811
Hin6I	GCGC	2 cut(s)	11, 167
HinP1I	GCGC	2 cut(s)	11, 167
HindIII	AAGCTT	1 cut(s)	606
HinfI	GANTC	5 cut(s)	5, 369, 406, 526, 563
HpaII	CCGG	1 cut(s)	822
Hpy188I	TCNGA	6 cut(s)	262, 405, 419, 568, 604, 616
Hpy188III	TCNNGA	6 cut(s)	212, 380, 508, 523, 776, 802
HpyAV	CCTTC	5 cut(s)	29, 103, 151, 458, 545
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4IV	ACGT	1 cut(s)	578
HpyCH4V	TGCA	1 cut(s)	766
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 175
HpyF3I	CTNAG	1 cut(s)	531
HpySE526I	ACGT	1 cut(s)	578
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	3 cut(s)	191, 316, 811
HspAI	GCGC	2 cut(s)	11, 167
Kzo9I	GATC	3 cut(s)	205, 234, 303
LmnI	GCTCC	4 cut(s)	73, 286, 731, 835
LpnPI	CCDG	9 cut(s)	79, 398, 469, 483, 680, 714, 789, 824, 835
Lsp1109I	GCAGC	3 cut(s)	35, 38, 658
MaeI	CTAG	1 cut(s)	212
MaeII	ACGT	1 cut(s)	578
MalI	GATC	3 cut(s)	207, 236, 305
MbiI	CCGCTC	1 cut(s)	256
MboI	GATC	3 cut(s)	205, 234, 303
MhlI	GDGCHC	2 cut(s)	66, 852
MluCI	AATT	3 cut(s)	395, 477, 501
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	2 cut(s)	240, 397
MroXI	GAANNNNTTC	2 cut(s)	278, 562
MseI	TTAA	2 cut(s)	321, 862
MspA1I	CMGCKG	1 cut(s)	649
MspI	CCGG	1 cut(s)	822
MspR9I	CCNGG	1 cut(s)	822
MwoI	GCNNNNNNNGC	2 cut(s)	23, 175
NciI	CCSGG	1 cut(s)	822
NcoI	CCATGG	1 cut(s)	312
NdeII	GATC	3 cut(s)	205, 234, 303
NlaIII	CATG	3 cut(s)	191, 316, 811
NlaIV	GGNNCC	2 cut(s)	75, 820
NmeAIII	GCCGAG	1 cut(s)	277
NspI	RCATGY	1 cut(s)	811
PaeR7I	CTCGAG	1 cut(s)	851
PceI	AGGCCT	1 cut(s)	574
PciI	ACATGT	1 cut(s)	807
PdmI	GAANNNNTTC	2 cut(s)	278, 562
PfeI	GAWTC	4 cut(s)	369, 406, 526, 563
PkrI	GCNGC	3 cut(s)	25, 28, 648
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PpuMI	RGGWCCY	1 cut(s)	467
PscI	ACATGT	1 cut(s)	807
PsiI	TTATAA	1 cut(s)	621
Psp5II	RGGWCCY	1 cut(s)	467
PspN4I	GGNNCC	2 cut(s)	75, 820
PspPI	GGNCC	3 cut(s)	467, 544, 818
PspPPI	RGGWCCY	1 cut(s)	467
PspXI	VCTCGAGB	1 cut(s)	851
PstNI	CAGNNNCTG	1 cut(s)	649
PvuII	CAGCTG	1 cut(s)	649
RsaI	GTAC	2 cut(s)	675, 812
RsaNI	GTAC	2 cut(s)	674, 811
SaqAI	TTAA	2 cut(s)	321, 862
SatI	GCNGC	3 cut(s)	24, 27, 647
Sau3AI	GATC	3 cut(s)	205, 234, 303
Sau96I	GGNCC	3 cut(s)	467, 544, 818
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	822
SduI	GDGCHC	2 cut(s)	66, 852
Sfr274I	CTCGAG	1 cut(s)	851
SinI	GGWCC	3 cut(s)	467, 544, 818
SlaI	CTCGAG	1 cut(s)	851
SmlI	CTYRAG	2 cut(s)	506, 851
SmoI	CTYRAG	2 cut(s)	506, 851
Sse9I	AATT	3 cut(s)	395, 477, 501
SseBI	AGGCCT	1 cut(s)	574
SsiI	CCGC	1 cut(s)	256
SspMI	CTAG	1 cut(s)	212
StuI	AGGCCT	1 cut(s)	574
StyD4I	CCNGG	1 cut(s)	820
StyI	CCWWGG	2 cut(s)	312, 540
TaaI	ACNGT	1 cut(s)	434
TaiI	ACGT	1 cut(s)	581
TaqI	TCGA	5 cut(s)	237, 282, 306, 339, 852
TasI	AATT	3 cut(s)	395, 477, 501
TatI	WGTACW	1 cut(s)	810
TfiI	GAWTC	4 cut(s)	369, 406, 526, 563
Tru1I	TTAA	2 cut(s)	321, 862
Tru9I	TTAA	2 cut(s)	321, 862
TscAI	CASTG	1 cut(s)	798
TseI	GCWGC	3 cut(s)	23, 26, 646
TspDTI	ATGAA	6 cut(s)	122, 143, 152, 438, 474, 618
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	1 cut(s)	798
VpaK11BI	GGWCC	3 cut(s)	467, 544, 818
XbaI	TCTAGA	1 cut(s)	211
XceI	RCATGY	1 cut(s)	811
XcmI	CCANNNNNNNNNTGG	1 cut(s)	725
XhoI	CTCGAG	1 cut(s)	851
XmnI	GAANNNNTTC	2 cut(s)	278, 562
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.