Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Reverse (-)

13924923 .. 13946927

Gene Structure 22005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG094100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGACGGTGGAGAAGAGCTGCTTTTGGTGTGGCGCCCTTGAAAAGACAGTATACATTGTCTATGAGATTGTAGATTTGCAAAGCAAGTCTCTAAGTATAGCTTCCTGGCAGATGTACACAAAGGGTGGCGTGAGCCAAGCTAATGACCTGTTTAATCATGTCACTGGGGTGATTTCTCAGGAAGAGTTAGCTCTGTTCGGTGTCATTACTTGGCTGATTTGGAAAAACCGGAATGCCTCCCGGTTTGGAGATCGAGAAGAAACAAGCACAAGATTTGAAGAGCACAAGAGAGTTGATGCATGGCAAAAGTATCACTTTACATTTGACAAAGTATTTGATCATTTGGCATCACTACATGATGTTTTTGTGGAAATATCGCAACTTGTCCAAAGTGCACTCGACGGCTACAAGGTCTGCATATTTGCCTATGGTCAATCAAGATCTAGTAAAACATATACCATGATTCGTAGACCAGAAACTCCATACCAAAAGGGATTGATAGCTCGGTTAGTAGACCAGATATTCCAAACAAGTCAATCTCTTCAAGCTCAGGGTTGGAATTATGGGATGCAGATAATCCGTGACTTGTTATCGACAAATCGACCAAGTGGTGCAAAGTTGACAAGGACAGAAAGTGGTATGGGCAAACAATATACAATAAAGCATGATGTCAATGGAAACACACACGTAATAAATGATATCGTAATGGTTAATGGCATGGATGGTATAGGTATCTTCATCCAATGGCTGAGATCTCTTAGTCGCCTAGGGGCAGTCAGATCTCCTGACACCACATCAGGTGACCACCCACCTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000280 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0005871 GO:0005872 GO:0005874 GO:0005875 GO:0005876 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007053 GO:0007140 GO:0007276 GO:0008150 GO:0008569 GO:0009524 GO:0009971 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0032501 GO:0032504 GO:0032991 GO:0042623 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0048232 GO:0048285 GO:0048609 GO:0051225 GO:0051321 GO:0051704 GO:0055048 GO:0070925 GO:0071840 GO:0090306 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140013 GO:1903046 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

272

Amino Acids

30.89

Weight (kDa)

8.35

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	86 - 200	3.1e-24	Kinesin motor domain
Microtub_bd	PF16796	93 - 192	5.4e-25	Microtubule binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	32
AccI	GTMKAC	3 cut(s)	51, 469, 513
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	1 cut(s)	116
AflIII	ACRYGT	1 cut(s)	685
AgsI	TTSAA	3 cut(s)	41, 278, 545
AjnI	CCWGG	2 cut(s)	104, 811
AleI	CACNNNNGTG	1 cut(s)	167
AluBI	AGCT	6 cut(s)	18, 101, 140, 191, 503, 548
AluI	AGCT	6 cut(s)	18, 101, 140, 191, 503, 548
Alw21I	GWGCWC	2 cut(s)	285, 397
Alw26I	GTCTC	1 cut(s)	93
Alw44I	GTGCAC	1 cut(s)	393
ApaLI	GTGCAC	1 cut(s)	393
ApeKI	GCWGC	1 cut(s)	18
ArsI	GACNNNNNNTTYG	2 cut(s)	317, 349
AspA2I	CCTAGG	1 cut(s)	766
AspLEI	GCGC	1 cut(s)	35
AsuC2I	CCSGG	1 cut(s)	241
AsuHPI	GGTGA	2 cut(s)	181, 812
AvrII	CCTAGG	1 cut(s)	766
BaeGI	GKGCMC	1 cut(s)	397
BanI	GGYRCC	1 cut(s)	32
Bbv12I	GWGCWC	2 cut(s)	285, 397
BbvI	GCAGC	1 cut(s)	5
BccI	CCATC	1 cut(s)	716
BceAI	ACGGC	1 cut(s)	418
BciT130I	CCWGG	2 cut(s)	106, 813
BclI	TGATCA	1 cut(s)	337
BcnI	CCSGG	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	93
BfaI	CTAG	2 cut(s)	444, 767
BfoI	RGCGCY	1 cut(s)	36
BglII	AGATCT	3 cut(s)	440, 752, 779
BisI	GCNGC	1 cut(s)	19
BlnI	CCTAGG	1 cut(s)	766
BlsI	GCNGC	1 cut(s)	20
Bme1390I	CCNGG	3 cut(s)	106, 241, 813
BmiI	GGNNCC	1 cut(s)	34
BmrFI	CCNGG	3 cut(s)	106, 241, 813
BmrI	ACTGGG	1 cut(s)	174
BmsI	GCATC	3 cut(s)	286, 356, 558
BmuI	ACTGGG	1 cut(s)	174
Bpu10I	CCTNAGC	1 cut(s)	549
BpuMI	CCSGG	1 cut(s)	241
BsaAI	YACGTR	1 cut(s)	688
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	766, 812
BsaWI	WCCGGW	1 cut(s)	228
Bse1I	ACTGG	1 cut(s)	169
BseBI	CCWGG	2 cut(s)	106, 813
BseDI	CCNNGG	2 cut(s)	766, 812
BseGI	GGATG	3 cut(s)	573, 727, 738
BseMII	CTCAG	3 cut(s)	191, 563, 740
BseNI	ACTGG	1 cut(s)	169
BseSI	GKGCMC	1 cut(s)	397
BseXI	GCAGC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	32
BsiHKAI	GWGCWC	2 cut(s)	285, 397
BsiSI	CCGG	2 cut(s)	229, 241
BsmAI	GTCTC	1 cut(s)	93
BsmI	GAATGC	1 cut(s)	238
Bsp1286I	GDGCHC	2 cut(s)	285, 397
Bsp1407I	TGTACA	1 cut(s)	114
Bsp143I	GATC	5 cut(s)	250, 337, 440, 752, 779
BspCNI	CTCAG	3 cut(s)	190, 562, 741
BspLI	GGNNCC	1 cut(s)	34
BspQI	GCTCTTC	2 cut(s)	8, 273
BspT107I	GGYRCC	1 cut(s)	32
BsrGI	TGTACA	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	169
BssECI	CCNNGG	2 cut(s)	766, 812
BssMI	GATC	5 cut(s)	250, 337, 440, 752, 779
BssNAI	GTATAC	1 cut(s)	52
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	766
Bst1107I	GTATAC	1 cut(s)	52
Bst2UI	CCWGG	2 cut(s)	106, 813
Bst4CI	ACNGT	2 cut(s)	7, 49
Bst6I	CTCTTC	4 cut(s)	8, 177, 273, 546
BstACI	GRCGYC	1 cut(s)	33
BstAUI	TGTACA	1 cut(s)	114
BstBAI	YACGTR	1 cut(s)	688
BstDEI	CTNAG	5 cut(s)	92, 177, 549, 749, 758
BstEII	GGTNACC	1 cut(s)	800
BstF5I	GGATG	3 cut(s)	573, 727, 738
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	5 cut(s)	253, 340, 443, 755, 782
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	5 cut(s)	250, 337, 440, 752, 779
BstNI	CCWGG	2 cut(s)	106, 813
BstPI	GGTNACC	1 cut(s)	800
BstSCI	CCNGG	3 cut(s)	104, 239, 811
BstSLI	GKGCMC	1 cut(s)	397
BstV1I	GCAGC	1 cut(s)	5
BstX2I	RGATCY	3 cut(s)	440, 752, 779
BstXI	CCANNNNNNTGG	1 cut(s)	812
BstYI	RGATCY	3 cut(s)	440, 752, 779
BstZ17I	GTATAC	1 cut(s)	52
BtsCI	GGATG	3 cut(s)	573, 727, 738
BtsIMutI	CAGTG	1 cut(s)	162
CfoI	GCGC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	6 cut(s)	158, 300, 356, 460, 665, 718
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	5 cut(s)	92, 177, 549, 749, 758
DinI	GGCGCC	1 cut(s)	34
DpnI	GATC	5 cut(s)	252, 339, 442, 754, 781
DpnII	GATC	5 cut(s)	250, 337, 440, 752, 779
Eam1104I	CTCTTC	4 cut(s)	8, 177, 273, 546
EarI	CTCTTC	4 cut(s)	8, 177, 273, 546
Eco130I	CCWWGG	1 cut(s)	766
Eco32I	GATATC	1 cut(s)	700
Eco91I	GGTNACC	1 cut(s)	800
EcoO65I	GGTNACC	1 cut(s)	800
EcoRII	CCWGG	2 cut(s)	104, 811
EcoRV	GATATC	1 cut(s)	700
EcoT14I	CCWWGG	1 cut(s)	766
EcoT22I	ATGCAT	1 cut(s)	301
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
ErhI	CCWWGG	1 cut(s)	766
FaeI	CATG	6 cut(s)	161, 303, 359, 463, 668, 721
FalI	AAGNNNNNCTT	5 cut(s)	37, 85, 117, 299, 331
FatI	CATG	6 cut(s)	157, 299, 355, 459, 664, 717
FbaI	TGATCA	1 cut(s)	337
FblI	GTMKAC	3 cut(s)	51, 469, 513
Fnu4HI	GCNGC	1 cut(s)	19
FokI	GGATG	3 cut(s)	580, 725, 734
Fsp4HI	GCNGC	1 cut(s)	19
FspBI	CTAG	2 cut(s)	444, 767
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	1 cut(s)	19
HaeII	RGCGCY	1 cut(s)	36
HapII	CCGG	2 cut(s)	229, 241
HhaI	GCGC	1 cut(s)	35
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	6 cut(s)	161, 303, 359, 463, 668, 721
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HincII	GTYRAC	1 cut(s)	621
HindII	GTYRAC	1 cut(s)	621
HinfI	GANTC	1 cut(s)	463
HpaII	CCGG	2 cut(s)	229, 241
HphI	GGTGA	2 cut(s)	181, 812
Hpy166II	GTNNAC	6 cut(s)	52, 117, 395, 470, 514, 621
Hpy188I	TCNGA	1 cut(s)	779
Hpy188III	TCNNGA	4 cut(s)	179, 254, 438, 785
Hpy8I	GTNNAC	6 cut(s)	52, 117, 395, 470, 514, 621
Hpy99I	CGWCG	1 cut(s)	404
HpyCH4III	ACNGT	2 cut(s)	7, 49
HpyCH4IV	ACGT	1 cut(s)	687
HpyCH4V	TGCA	6 cut(s)	79, 299, 395, 417, 571, 614
HpyF3I	CTNAG	5 cut(s)	92, 177, 549, 749, 758
HpySE526I	ACGT	1 cut(s)	687
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	6 cut(s)	161, 303, 359, 463, 668, 721
HspAI	GCGC	1 cut(s)	33
KasI	GGCGCC	1 cut(s)	32
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	5 cut(s)	250, 337, 440, 752, 779
LguI	GCTCTTC	2 cut(s)	8, 273
Lsp1109I	GCAGC	1 cut(s)	5
LweI	GCATC	3 cut(s)	286, 356, 558
MaeI	CTAG	2 cut(s)	444, 767
MaeII	ACGT	1 cut(s)	687
MaeIII	GTNAC	3 cut(s)	160, 581, 800
MalI	GATC	5 cut(s)	252, 339, 442, 754, 781
MboI	GATC	5 cut(s)	250, 337, 440, 752, 779
MboII	GAAGA	6 cut(s)	25, 194, 269, 290, 533, 727
MflI	RGATCY	3 cut(s)	440, 752, 779
MhlI	GDGCHC	2 cut(s)	285, 397
MluCI	AATT	1 cut(s)	559
Mly113I	GGCGCC	1 cut(s)	33
MmeI	TCCRAC	1 cut(s)	536
MnlI	CCTC	1 cut(s)	247
Mph1103I	ATGCAT	1 cut(s)	301
MseI	TTAA	2 cut(s)	153, 711
MslI	CAYNNNNRTG	1 cut(s)	167
MspI	CCGG	2 cut(s)	229, 241
MspR9I	CCNGG	3 cut(s)	106, 241, 813
Mva1269I	GAATGC	1 cut(s)	238
MvaI	CCWGG	2 cut(s)	106, 813
NarI	GGCGCC	1 cut(s)	33
NciI	CCSGG	1 cut(s)	241
NdeII	GATC	5 cut(s)	250, 337, 440, 752, 779
NlaIII	CATG	6 cut(s)	161, 303, 359, 463, 668, 721
NlaIV	GGNNCC	1 cut(s)	34
NmuCI	GTSAC	3 cut(s)	160, 581, 800
NsiI	ATGCAT	1 cut(s)	301
OliI	CACNNNNGTG	1 cut(s)	167
PciSI	GCTCTTC	2 cut(s)	8, 273
PctI	GAATGC	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	463
PkrI	GCNGC	1 cut(s)	20
PluTI	GGCGCC	1 cut(s)	36
Ppu21I	YACGTR	1 cut(s)	688
Psp6I	CCWGG	2 cut(s)	104, 811
PspEI	GGTNACC	1 cut(s)	800
PspGI	CCWGG	2 cut(s)	104, 811
PspN4I	GGNNCC	1 cut(s)	34
PsuI	RGATCY	3 cut(s)	440, 752, 779
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	167
SapI	GCTCTTC	2 cut(s)	8, 273
SaqAI	TTAA	2 cut(s)	153, 711
SatI	GCNGC	1 cut(s)	19
Sau3AI	GATC	5 cut(s)	250, 337, 440, 752, 779
ScrFI	CCNGG	3 cut(s)	106, 241, 813
SduI	GDGCHC	2 cut(s)	285, 397
SfaNI	GCATC	3 cut(s)	286, 356, 558
SfoI	GGCGCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	167
Sse9I	AATT	1 cut(s)	559
SspDI	GGCGCC	1 cut(s)	32
SspMI	CTAG	2 cut(s)	444, 767
StyD4I	CCNGG	3 cut(s)	104, 239, 811
StyI	CCWWGG	1 cut(s)	766
TaaI	ACNGT	2 cut(s)	7, 49
TaiI	ACGT	1 cut(s)	690
TaqI	TCGA	4 cut(s)	253, 399, 593, 601
TasI	AATT	1 cut(s)	559
TatI	WGTACW	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	2 cut(s)	153, 711
Tru9I	TTAA	2 cut(s)	153, 711
TscAI	CASTG	1 cut(s)	169
TseFI	GTSAC	3 cut(s)	160, 581, 800
TseI	GCWGC	1 cut(s)	18
Tsp45I	GTSAC	3 cut(s)	160, 581, 800
TspDTI	ATGAA	1 cut(s)	727
TspGWI	ACGGA	1 cut(s)	569
TspRI	CASTG	1 cut(s)	169
VneI	GTGCAC	1 cut(s)	393
XmaJI	CCTAGG	1 cut(s)	766
XmiI	GTMKAC	3 cut(s)	51, 469, 513
XspI	CTAG	2 cut(s)	444, 767
Zsp2I	ATGCAT	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.