Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Forward (+)

32879914 .. 32881154

Gene Structure 1241 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24447

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAGCCGGAAGGAGAAGAGGAAAGCCATGAAGAAGATGAAGCGGAAGCAGACGAGGAAGGAACTCGCTCTCAAAGAGCAAGAGCTTATCAACATGGAGCAAGAGGAGGCCAAGAGGTCCGTGAGTGTGAGGATCATGTTTGAGGAGCGAGAGAGAGCTTGGACTGAAGCCATGGAGATTCGAAAGCAGAAACGAATCGAACACGAAGAAGAGGAGCGTAGAAATAAGGCTCTGGAAGACGAAGAACTATCTCGCAAGCAACAGATCAAAAATGCAAATGATGATGGTGAAGATGACTGGGAGTATGTAGAAGAGGGTCCTGCTGAAATCATCTGGAAGGAAAATGAAGTACTTGTCAAGAAGAAAAGAGTCAAGGTTCCAAAGAGGAATAAAGACCAGCAAAGTATAAAGGAGGATTCTGATCGACCTACATCAAATCCTCTCCCTCCACAATCTGAAGCTTTTGATGATTACAAAAATGCATCTTTATCAGCGCAGCAGCTGATTGAGACTGTGGCTGAACAAGTACCGCATTTTGGAACTGAACAGGATAAAGATCATTGTACTTTCCATTTGAAAACTGGAGCTTGTCGGTTTGGTCAGCATTGCAGCAGAGTCCATTTTTACCCGGATAAATCATGCACACTGCTTATCAAGAACATGTACAATGGTCCTGGCCTTACTTGGAAGCAGGATGAGGGGCTCGAGGTCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030628 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

238

Amino Acids

28.16

Weight (kDa)

6.64

Isoelectric Point (pI)

75.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	43, 530
AclWI	GGATC	1 cut(s)	140
AcuI	CTGAAG	2 cut(s)	186, 477
AfaI	GTAC	4 cut(s)	351, 528, 565, 665
AfiI	CCNNNNNNNGG	1 cut(s)	536
AflIII	ACRYGT	1 cut(s)	660
AgsI	TTSAA	1 cut(s)	577
AjnI	CCWGG	1 cut(s)	673
AluBI	AGCT	5 cut(s)	85, 158, 461, 502, 587
AluI	AGCT	5 cut(s)	85, 158, 461, 502, 587
Alw26I	GTCTC	1 cut(s)	503
AlwI	GGATC	1 cut(s)	140
AlwNI	CAGNNNCTG	1 cut(s)	502
Ama87I	CYCGRG	1 cut(s)	704
AoxI	GGCC	2 cut(s)	108, 676
ApeKI	GCWGC	3 cut(s)	496, 499, 609
AspLEI	GCGC	1 cut(s)	496
AspS9I	GGNCC	3 cut(s)	117, 317, 671
AsuC2I	CCSGG	1 cut(s)	629
AsuHPI	GGTGA	1 cut(s)	299
AsuII	TTCGAA	1 cut(s)	181
AvaI	CYCGRG	1 cut(s)	704
AvaII	GGWCC	3 cut(s)	117, 317, 671
BanII	GRGCYC	1 cut(s)	705
BbsI	GAAGAC	1 cut(s)	243
BbvI	GCAGC	3 cut(s)	508, 511, 621
BccI	CCATC	1 cut(s)	278
BciT130I	CCWGG	1 cut(s)	675
BcnI	CCSGG	1 cut(s)	629
BcoDI	GTCTC	1 cut(s)	503
BisI	GCNGC	3 cut(s)	497, 500, 610
BlsI	GCNGC	3 cut(s)	498, 501, 611
BmcAI	AGTACT	1 cut(s)	351
Bme1390I	CCNGG	2 cut(s)	629, 675
Bme18I	GGWCC	3 cut(s)	117, 317, 671
BmeT110I	CYCGRG	1 cut(s)	704
BmgT120I	GGNCC	3 cut(s)	117, 317, 671
BmiI	GGNNCC	2 cut(s)	318, 378
BmrFI	CCNGG	2 cut(s)	629, 675
BmrI	ACTGGG	1 cut(s)	307
BmsI	GCATC	1 cut(s)	491
BmuI	ACTGGG	1 cut(s)	307
BpiI	GAAGAC	1 cut(s)	243
BpmI	CTGGAG	1 cut(s)	603
Bpu14I	TTCGAA	1 cut(s)	181
BpuMI	CCSGG	1 cut(s)	629
BsaBI	GATNNNNATC	2 cut(s)	420, 555
BsaJI	CCNNGG	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	1 cut(s)	536
Bse1I	ACTGG	2 cut(s)	302, 586
Bse3DI	GCAATG	1 cut(s)	604
Bse8I	GATNNNNATC	2 cut(s)	420, 555
BseBI	CCWGG	1 cut(s)	675
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	1 cut(s)	700
BseJI	GATNNNNATC	2 cut(s)	420, 555
BseLI	CCNNNNNNNGG	1 cut(s)	536
BseMI	GCAATG	1 cut(s)	604
BseNI	ACTGG	2 cut(s)	302, 586
BseRI	GAGGAG	3 cut(s)	119, 158, 227
BseXI	GCAGC	3 cut(s)	508, 511, 621
BshFI	GGCC	2 cut(s)	110, 678
BsiHKCI	CYCGRG	1 cut(s)	704
BsiSI	CCGG	2 cut(s)	7, 629
BslI	CCNNNNNNNGG	1 cut(s)	536
BsmAI	GTCTC	1 cut(s)	503
BsnI	GGCC	2 cut(s)	110, 678
BsoBI	CYCGRG	1 cut(s)	704
Bsp119I	TTCGAA	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	705
Bsp1407I	TGTACA	1 cut(s)	663
Bsp143I	GATC	4 cut(s)	132, 264, 421, 556
Bsp19I	CCATGG	1 cut(s)	171
BspACI	CCGC	2 cut(s)	43, 530
BspANI	GGCC	2 cut(s)	110, 678
BspLI	GGNNCC	2 cut(s)	318, 378
BspPI	GGATC	1 cut(s)	140
BspT104I	TTCGAA	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	604
BsrGI	TGTACA	1 cut(s)	663
BsrI	ACTGG	2 cut(s)	302, 586
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	4 cut(s)	132, 264, 421, 556
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	675
Bst4CI	ACNGT	1 cut(s)	514
Bst6I	CTCTTC	3 cut(s)	11, 204, 306
BstAUI	TGTACA	1 cut(s)	663
BstBI	TTCGAA	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	257
BstDSI	CCRYGG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	700
BstHHI	GCGC	1 cut(s)	496
BstKTI	GATC	4 cut(s)	135, 267, 424, 559
BstMAI	GTCTC	1 cut(s)	503
BstMBI	GATC	4 cut(s)	132, 264, 421, 556
BstNI	CCWGG	1 cut(s)	675
BstNSI	RCATGY	1 cut(s)	664
BstSCI	CCNGG	2 cut(s)	627, 673
BstV1I	GCAGC	3 cut(s)	508, 511, 621
BstV2I	GAAGAC	1 cut(s)	243
BsuRI	GGCC	2 cut(s)	110, 678
BtgI	CCRYGG	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	700
BtsI	GCAGTG	1 cut(s)	644
BtsIMutI	CAGTG	1 cut(s)	644
Cac8I	GCNNGC	1 cut(s)	257
CaiI	CAGNNNCTG	1 cut(s)	502
CfoI	GCGC	1 cut(s)	496
Cfr13I	GGNCC	3 cut(s)	117, 317, 671
Csp6I	GTAC	4 cut(s)	350, 527, 564, 664
CviAII	CATG	6 cut(s)	28, 94, 136, 172, 639, 661
CviQI	GTAC	4 cut(s)	350, 527, 564, 664
DpnI	GATC	4 cut(s)	134, 266, 423, 558
DpnII	GATC	4 cut(s)	132, 264, 421, 556
Eam1104I	CTCTTC	3 cut(s)	11, 204, 306
EarI	CTCTTC	3 cut(s)	11, 204, 306
Eco130I	CCWWGG	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	705
Eco47I	GGWCC	3 cut(s)	117, 317, 671
Eco57I	CTGAAG	2 cut(s)	186, 477
Eco88I	CYCGRG	1 cut(s)	704
EcoO109I	RGGNCCY	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	673
EcoT14I	CCWWGG	1 cut(s)	171
EcoT22I	ATGCAT	1 cut(s)	484
EcoT38I	GRGCYC	1 cut(s)	705
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	6 cut(s)	31, 97, 139, 175, 642, 664
FaiI	YATR	8 cut(s)	29, 95, 137, 173, 306, 407, 640, 662
FatI	CATG	6 cut(s)	27, 93, 135, 171, 638, 660
Fnu4HI	GCNGC	3 cut(s)	497, 500, 610
FokI	GGATG	1 cut(s)	707
FriOI	GRGCYC	1 cut(s)	705
Fsp4HI	GCNGC	3 cut(s)	497, 500, 610
GlaI	GCGC	1 cut(s)	495
GluI	GCNGC	3 cut(s)	497, 500, 610
GsuI	CTGGAG	1 cut(s)	603
HaeIII	GGCC	2 cut(s)	110, 678
HapII	CCGG	2 cut(s)	7, 629
HhaI	GCGC	1 cut(s)	496
Hin1II	CATG	6 cut(s)	31, 97, 139, 175, 642, 664
Hin6I	GCGC	1 cut(s)	494
HinP1I	GCGC	1 cut(s)	494
HindIII	AAGCTT	1 cut(s)	459
HinfI	GANTC	5 cut(s)	178, 195, 369, 416, 615
HpaII	CCGG	2 cut(s)	7, 629
HphI	GGTGA	1 cut(s)	299
Hpy188I	TCNGA	2 cut(s)	421, 457
Hpy188III	TCNNGA	4 cut(s)	233, 334, 358, 655
HpyAV	CCTTC	3 cut(s)	4, 52, 331
HpyCH4III	ACNGT	1 cut(s)	514
HpyCH4V	TGCA	4 cut(s)	275, 482, 609, 642
Hsp92II	CATG	6 cut(s)	31, 97, 139, 175, 642, 664
HspAI	GCGC	1 cut(s)	494
Kzo9I	GATC	4 cut(s)	132, 264, 421, 556
LmnI	GCTCC	4 cut(s)	97, 145, 214, 584
Lsp1109I	GCAGC	3 cut(s)	508, 511, 621
LweI	GCATC	1 cut(s)	491
MalI	GATC	4 cut(s)	134, 266, 423, 558
MboI	GATC	4 cut(s)	132, 264, 421, 556
MhlI	GDGCHC	1 cut(s)	705
MlyI	GAGTC	2 cut(s)	378, 624
Mph1103I	ATGCAT	1 cut(s)	484
MseI	TTAA	1 cut(s)	715
MspA1I	CMGCKG	1 cut(s)	502
MspI	CCGG	2 cut(s)	7, 629
MspR9I	CCNGG	2 cut(s)	629, 675
MvaI	CCWGG	1 cut(s)	675
NciI	CCSGG	1 cut(s)	629
NcoI	CCATGG	1 cut(s)	171
NdeII	GATC	4 cut(s)	132, 264, 421, 556
NlaIII	CATG	6 cut(s)	31, 97, 139, 175, 642, 664
NlaIV	GGNNCC	2 cut(s)	318, 378
NsiI	ATGCAT	1 cut(s)	484
NspI	RCATGY	1 cut(s)	664
NspV	TTCGAA	1 cut(s)	181
PaeR7I	CTCGAG	1 cut(s)	704
PciI	ACATGT	1 cut(s)	660
PfeI	GAWTC	3 cut(s)	178, 195, 416
PkrI	GCNGC	3 cut(s)	498, 501, 611
PleI	GAGTC	2 cut(s)	377, 623
PpsI	GAGTC	2 cut(s)	377, 623
PpuMI	RGGWCCY	1 cut(s)	317
PscI	ACATGT	1 cut(s)	660
Psp5II	RGGWCCY	1 cut(s)	317
Psp6I	CCWGG	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	673
PspN4I	GGNNCC	2 cut(s)	318, 378
PspPI	GGNCC	3 cut(s)	117, 317, 671
PspPPI	RGGWCCY	1 cut(s)	317
PspXI	VCTCGAGB	1 cut(s)	704
PstNI	CAGNNNCTG	1 cut(s)	502
PvuII	CAGCTG	1 cut(s)	502
RsaI	GTAC	4 cut(s)	351, 528, 565, 665
RsaNI	GTAC	4 cut(s)	350, 527, 564, 664
SaqAI	TTAA	1 cut(s)	715
SatI	GCNGC	3 cut(s)	497, 500, 610
Sau3AI	GATC	4 cut(s)	132, 264, 421, 556
Sau96I	GGNCC	3 cut(s)	117, 317, 671
ScaI	AGTACT	1 cut(s)	351
SchI	GAGTC	2 cut(s)	378, 624
ScrFI	CCNGG	2 cut(s)	629, 675
SduI	GDGCHC	1 cut(s)	705
SetI	ASST	9 cut(s)	87, 119, 160, 378, 430, 463, 504, 589, 711
SfaNI	GCATC	1 cut(s)	491
Sfr274I	CTCGAG	1 cut(s)	704
SfuI	TTCGAA	1 cut(s)	181
SinI	GGWCC	3 cut(s)	117, 317, 671
SlaI	CTCGAG	1 cut(s)	704
SmlI	CTYRAG	1 cut(s)	704
SmoI	CTYRAG	1 cut(s)	704
SsiI	CCGC	2 cut(s)	43, 530
StyD4I	CCNGG	2 cut(s)	627, 673
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	514
TaqI	TCGA	4 cut(s)	181, 198, 424, 705
TatI	WGTACW	3 cut(s)	349, 563, 663
TfiI	GAWTC	3 cut(s)	178, 195, 416
Tru1I	TTAA	1 cut(s)	715
Tru9I	TTAA	1 cut(s)	715
TscAI	CASTG	1 cut(s)	651
TseI	GCWGC	3 cut(s)	496, 499, 609
TspDTI	ATGAA	3 cut(s)	44, 53, 360
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	1 cut(s)	651
VpaK11BI	GGWCC	3 cut(s)	117, 317, 671
XceI	RCATGY	1 cut(s)	664
XcmI	CCANNNNNNNNNTGG	1 cut(s)	578
XhoI	CTCGAG	1 cut(s)	704
ZrmI	AGTACT	1 cut(s)	351
Zsp2I	ATGCAT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.