Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Forward (+)

54265536 .. 54268590

Gene Structure 3055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1442200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGAGTCGACACTGGCTGAAGCAGCGGCAAAAGAAGGAGAAGGAGTAGGAGGAGGTATTGTGCCCAGAACGGATTCTTTGGGAGCAGAGAAAGGGATGACGAATAGGAAGGAGAAGAGGAAAGCGATGAAGAAGATGAAGAGAAAGCAGACGAGGAAGGAGATGGCGCTGAAAGAGCGAGAGGAACATGACGCCATTCTCAACAATCCTCTAGAGCTTGCGAAGATTACGATGATCGAGCACGAGGAGGCCGAGCGGTCGGAAAGAGAAAGGAAGATTTTCGAGGAGCGAGAGAGGGCGTGGATGGAAGCCATGGAGGTTAAGAGGAAGAAACAAATCGAAGAAGAAGAAGAGGAAGAACAAAGAAGAATCAAGGCTCTTGAGGAAGAAGACGAATTGTCTCGGAATGAACAGGTCGAAAATGCAAATGACGGTAATGAGGTTGATGAGTGGGACTATGAAGAAGGACCCGCTGAAATCATCTGGCAAGGAAATGAGATCATTCTCAAGAAGAAAAGGGTCAAGATTCCTAAGAAAAACACTGACCAAGAAAGTAGAAAGAAGGATTCTGATAGGCCTATATCAAATCCTCTCCCTCCACAATCTGAAGCTTTTTCTGATTATAAAAGTTCATCAATGTCAGCACAGCAGCTCATCGAGAGTGTTGCTCAACAAGTACCTCATTTTGGAACTGAGCAGGATAAAGCTCATTGCCCTTTCCATTTGAAAACTGGAGCTTGTCGGTTTGGTCAGCGATGTAGCAGAGTCCATTTCTGTCCTGATAAATCTTCCACACTGCTTATCAAGAACATGTACAATGGTCCAGGCCTTGCTTGGGAGCAGGATGAGGGGCTCGAGAGATTCATTTGCGATATTCGCTTTGGTGGGGATTCAAGCTTTCAGCCTTGGTTCAGTTGGAATCAAAGATACCCCAATAGTGTATCCTTCCTTGCTGGCAATAGTAACTTGTTACCACATAACGTATCCCTTGTTTTCTTATTCTTATTACCATTTATGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030628 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

341

Amino Acids

39.26

Weight (kDa)

5.56

Isoelectric Point (pI)

57.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	624
AccBSI	CCGCTC	1 cut(s)	256
AccI	GTMKAC	1 cut(s)	8
AciI	CCGC	3 cut(s)	26, 256, 471
AcuI	CTGAAG	2 cut(s)	39, 627
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	2 cut(s)	678, 815
AfiI	CCNNNNNNNGG	2 cut(s)	686, 835
AflIII	ACRYGT	1 cut(s)	810
AgsI	TTSAA	2 cut(s)	727, 894
AhdI	GACNNNNNGTC	1 cut(s)	397
AjnI	CCWGG	1 cut(s)	823
AluBI	AGCT	6 cut(s)	217, 611, 652, 707, 737, 897
AluI	AGCT	6 cut(s)	217, 611, 652, 707, 737, 897
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	1 cut(s)	405
Ama87I	CYCGRG	1 cut(s)	854
AoxI	GGCC	3 cut(s)	249, 575, 826
ApeKI	GCWGC	2 cut(s)	23, 649
Asp700I	GAANNNNTTC	2 cut(s)	73, 278
AspLEI	GCGC	1 cut(s)	169
AspS9I	GGNCC	2 cut(s)	467, 821
AvaI	CYCGRG	1 cut(s)	854
AvaII	GGWCC	2 cut(s)	467, 821
BaeGI	GKGCMC	1 cut(s)	66
BanII	GRGCYC	1 cut(s)	855
BauI	CACGAG	1 cut(s)	242
BbsI	GAAGAC	1 cut(s)	396
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	2 cut(s)	35, 661
BccI	CCATC	2 cut(s)	157, 298
BcgI	CGANNNNNNTGC	2 cut(s)	647, 681
BciT130I	CCWGG	1 cut(s)	825
BciVI	GTATCC	2 cut(s)	952, 994
BcoDI	GTCTC	1 cut(s)	405
BfaI	CTAG	1 cut(s)	212
BfoI	RGCGCY	1 cut(s)	170
BfuI	GTATCC	2 cut(s)	952, 994
BisI	GCNGC	3 cut(s)	24, 27, 650
BlsI	GCNGC	3 cut(s)	25, 28, 651
Bme1390I	CCNGG	1 cut(s)	825
Bme18I	GGWCC	2 cut(s)	467, 821
BmeRI	GACNNNNNGTC	1 cut(s)	397
BmeT110I	CYCGRG	1 cut(s)	854
BmgT120I	GGNCC	2 cut(s)	467, 821
BmiI	GGNNCC	1 cut(s)	469
BmrFI	CCNGG	1 cut(s)	825
BpiI	GAAGAC	1 cut(s)	396
BplI	GAGNNNNNCTC	2 cut(s)	652, 684
BpmI	CTGGAG	1 cut(s)	753
BpuEI	CTTGAG	2 cut(s)	401, 491
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	2 cut(s)	312, 905
BsaXI	ACNNNNNCTCC	4 cut(s)	30, 45, 60, 75
Bsc4I	CCNNNNNNNGG	2 cut(s)	686, 835
Bse1I	ACTGG	2 cut(s)	18, 736
Bse3DI	GCAATG	1 cut(s)	709
BseBI	CCWGG	1 cut(s)	825
BseDI	CCNNGG	2 cut(s)	312, 905
BseGI	GGATG	3 cut(s)	102, 309, 850
BseLI	CCNNNNNNNGG	2 cut(s)	686, 835
BseMI	GCAATG	1 cut(s)	709
BseMII	CTCAG	1 cut(s)	684
BseNI	ACTGG	2 cut(s)	18, 736
BseRI	GAGGAG	3 cut(s)	66, 260, 299
BseSI	GKGCMC	1 cut(s)	66
BseXI	GCAGC	2 cut(s)	35, 661
Bsh1285I	CGRYCG	1 cut(s)	260
BshFI	GGCC	3 cut(s)	251, 577, 828
BsiEI	CGRYCG	1 cut(s)	260
BsiHKAI	GWGCWC	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	854
BslFI	GGGAC	1 cut(s)	467
BslI	CCNNNNNNNGG	2 cut(s)	686, 835
BsmAI	GTCTC	1 cut(s)	405
BsmFI	GGGAC	1 cut(s)	467
BsnI	GGCC	3 cut(s)	251, 577, 828
BsoBI	CYCGRG	1 cut(s)	854
Bsp1286I	GDGCHC	3 cut(s)	66, 243, 855
Bsp1407I	TGTACA	1 cut(s)	813
Bsp143I	GATC	2 cut(s)	234, 498
Bsp19I	CCATGG	1 cut(s)	312
BspACI	CCGC	3 cut(s)	26, 256, 471
BspANI	GGCC	3 cut(s)	251, 577, 828
BspCNI	CTCAG	1 cut(s)	685
BspLI	GGNNCC	1 cut(s)	469
BsrBI	CCGCTC	1 cut(s)	256
BsrDI	GCAATG	1 cut(s)	709
BsrGI	TGTACA	1 cut(s)	813
BsrI	ACTGG	2 cut(s)	18, 736
BssECI	CCNNGG	2 cut(s)	312, 905
BssMI	GATC	2 cut(s)	234, 498
BssNI	GRCGYC	1 cut(s)	192
BssSI	CACGAG	1 cut(s)	242
BssT1I	CCWWGG	2 cut(s)	312, 905
Bst2BI	CACGAG	1 cut(s)	242
Bst2UI	CCWGG	1 cut(s)	825
Bst4CI	ACNGT	1 cut(s)	434
Bst6I	CTCTTC	3 cut(s)	110, 134, 345
BstACI	GRCGYC	1 cut(s)	192
BstAUI	TGTACA	1 cut(s)	813
BstC8I	GCNNGC	2 cut(s)	219, 955
BstDEI	CTNAG	2 cut(s)	531, 693
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	3 cut(s)	102, 309, 850
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	2 cut(s)	237, 501
BstMAI	GTCTC	1 cut(s)	405
BstMBI	GATC	2 cut(s)	234, 498
BstMCI	CGRYCG	1 cut(s)	260
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 175, 876
BstNI	CCWGG	1 cut(s)	825
BstNSI	RCATGY	1 cut(s)	814
BstSCI	CCNGG	1 cut(s)	823
BstSLI	GKGCMC	1 cut(s)	66
BstV1I	GCAGC	2 cut(s)	35, 661
BstV2I	GAAGAC	1 cut(s)	396
BsuI	GTATCC	2 cut(s)	952, 994
BsuRI	GGCC	3 cut(s)	251, 577, 828
BtgI	CCRYGG	1 cut(s)	312
BtgZI	GCGATG	2 cut(s)	140, 769
BtsCI	GGATG	3 cut(s)	102, 309, 850
BtsI	GCAGTG	1 cut(s)	794
BtsIMutI	CAGTG	3 cut(s)	11, 540, 794
Cac8I	GCNNGC	2 cut(s)	219, 955
CfoI	GCGC	1 cut(s)	169
Cfr13I	GGNCC	2 cut(s)	467, 821
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	2 cut(s)	677, 814
CviAII	CATG	3 cut(s)	188, 313, 811
CviQI	GTAC	2 cut(s)	677, 814
DdeI	CTNAG	2 cut(s)	531, 693
DpnI	GATC	2 cut(s)	236, 500
DpnII	GATC	2 cut(s)	234, 498
DriI	GACNNNNNGTC	1 cut(s)	397
Eam1104I	CTCTTC	3 cut(s)	110, 134, 345
Eam1105I	GACNNNNNGTC	1 cut(s)	397
EarI	CTCTTC	3 cut(s)	110, 134, 345
Eco130I	CCWWGG	2 cut(s)	312, 905
Eco147I	AGGCCT	2 cut(s)	577, 828
Eco24I	GRGCYC	1 cut(s)	855
Eco47I	GGWCC	2 cut(s)	467, 821
Eco57I	CTGAAG	2 cut(s)	39, 627
Eco88I	CYCGRG	1 cut(s)	854
EcoO109I	RGGNCCY	1 cut(s)	467
EcoRII	CCWGG	1 cut(s)	823
EcoT14I	CCWWGG	2 cut(s)	312, 905
EcoT38I	GRGCYC	1 cut(s)	855
ErhI	CCWWGG	2 cut(s)	312, 905
FaeI	CATG	3 cut(s)	191, 316, 814
FaiI	YATR	9 cut(s)	189, 314, 459, 581, 624, 812, 978, 1016, 1021
FaqI	GGGAC	1 cut(s)	467
FatI	CATG	3 cut(s)	187, 312, 810
FauI	CCCGC	1 cut(s)	478
FblI	GTMKAC	1 cut(s)	8
Fnu4HI	GCNGC	3 cut(s)	24, 27, 650
FokI	GGATG	3 cut(s)	109, 316, 857
FriOI	GRGCYC	1 cut(s)	855
Fsp4HI	GCNGC	3 cut(s)	24, 27, 650
FspBI	CTAG	1 cut(s)	212
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	3 cut(s)	24, 27, 650
GsuI	CTGGAG	1 cut(s)	753
HaeII	RGCGCY	1 cut(s)	170
HaeIII	GGCC	3 cut(s)	251, 577, 828
HgaI	GACGC	1 cut(s)	200
HhaI	GCGC	1 cut(s)	169
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	3 cut(s)	191, 316, 814
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HindIII	AAGCTT	2 cut(s)	609, 895
HinfI	GANTC	9 cut(s)	5, 74, 369, 526, 566, 765, 861, 890, 919
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	5 cut(s)	262, 405, 571, 607, 619
Hpy188III	TCNNGA	8 cut(s)	212, 380, 508, 523, 658, 779, 805, 856
Hpy8I	GTNNAC	1 cut(s)	9
HpyAV	CCTTC	7 cut(s)	29, 35, 103, 151, 458, 556, 955
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4IV	ACGT	1 cut(s)	981
HpyCH4V	TGCA	1 cut(s)	425
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 175, 876
HpyF3I	CTNAG	2 cut(s)	531, 693
HpySE526I	ACGT	1 cut(s)	981
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	3 cut(s)	191, 316, 814
HspAI	GCGC	1 cut(s)	167
Kzo9I	GATC	2 cut(s)	234, 498
LmnI	GCTCC	4 cut(s)	83, 286, 734, 838
Lsp1109I	GCAGC	2 cut(s)	35, 661
MaeI	CTAG	1 cut(s)	212
MaeII	ACGT	1 cut(s)	981
MaeIII	GTNAC	2 cut(s)	962, 969
MalI	GATC	2 cut(s)	236, 500
MbiI	CCGCTC	1 cut(s)	256
MboI	GATC	2 cut(s)	234, 498
MhlI	GDGCHC	3 cut(s)	66, 243, 855
MluCI	AATT	1 cut(s)	395
MlyI	GAGTC	2 cut(s)	14, 774
MmeI	TCCRAC	2 cut(s)	240, 896
MroXI	GAANNNNTTC	2 cut(s)	73, 278
MseI	TTAA	1 cut(s)	321
MspA1I	CMGCKG	2 cut(s)	26, 473
MspR9I	CCNGG	1 cut(s)	825
MvaI	CCWGG	1 cut(s)	825
MwoI	GCNNNNNNNGC	3 cut(s)	23, 175, 876
NcoI	CCATGG	1 cut(s)	312
NdeII	GATC	2 cut(s)	234, 498
NlaIII	CATG	3 cut(s)	191, 316, 814
NlaIV	GGNNCC	1 cut(s)	469
NmeAIII	GCCGAG	1 cut(s)	277
NspI	RCATGY	1 cut(s)	814
PaeR7I	CTCGAG	1 cut(s)	854
PceI	AGGCCT	2 cut(s)	577, 828
PciI	ACATGT	1 cut(s)	810
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PdmI	GAANNNNTTC	2 cut(s)	73, 278
PfeI	GAWTC	7 cut(s)	74, 369, 526, 566, 861, 890, 919
PkrI	GCNGC	3 cut(s)	25, 28, 651
PleI	GAGTC	2 cut(s)	13, 773
PpsI	GAGTC	2 cut(s)	13, 773
PpuMI	RGGWCCY	1 cut(s)	467
PscI	ACATGT	1 cut(s)	810
PsiI	TTATAA	1 cut(s)	624
Psp5II	RGGWCCY	1 cut(s)	467
Psp6I	CCWGG	1 cut(s)	823
PspGI	CCWGG	1 cut(s)	823
PspN4I	GGNNCC	1 cut(s)	469
PspPI	GGNCC	2 cut(s)	467, 821
PspPPI	RGGWCCY	1 cut(s)	467
RsaI	GTAC	2 cut(s)	678, 815
RsaNI	GTAC	2 cut(s)	677, 814
SalI	GTCGAC	1 cut(s)	7
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	3 cut(s)	24, 27, 650
Sau3AI	GATC	2 cut(s)	234, 498
Sau96I	GGNCC	2 cut(s)	467, 821
SchI	GAGTC	2 cut(s)	14, 774
ScrFI	CCNGG	1 cut(s)	825
SduI	GDGCHC	3 cut(s)	66, 243, 855
Sfr274I	CTCGAG	1 cut(s)	854
SinI	GGWCC	2 cut(s)	467, 821
SlaI	CTCGAG	1 cut(s)	854
SmlI	CTYRAG	3 cut(s)	380, 506, 854
SmoI	CTYRAG	3 cut(s)	380, 506, 854
Sse9I	AATT	1 cut(s)	395
SseBI	AGGCCT	2 cut(s)	577, 828
SsiI	CCGC	3 cut(s)	26, 256, 471
SspMI	CTAG	1 cut(s)	212
StuI	AGGCCT	2 cut(s)	577, 828
StyD4I	CCNGG	1 cut(s)	823
StyI	CCWWGG	2 cut(s)	312, 905
TaaI	ACNGT	1 cut(s)	434
TaiI	ACGT	1 cut(s)	984
TaqI	TCGA	7 cut(s)	8, 237, 282, 339, 417, 657, 855
TasI	AATT	1 cut(s)	395
TatI	WGTACW	1 cut(s)	813
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	7 cut(s)	74, 369, 526, 566, 861, 890, 919
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	3 cut(s)	18, 547, 801
TseI	GCWGC	2 cut(s)	23, 649
TspDTI	ATGAA	6 cut(s)	143, 152, 423, 474, 621, 853
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	3 cut(s)	18, 547, 801
VpaK11BI	GGWCC	2 cut(s)	467, 821
XbaI	TCTAGA	1 cut(s)	211
XceI	RCATGY	1 cut(s)	814
XcmI	CCANNNNNNNNNTGG	2 cut(s)	728, 831
XhoI	CTCGAG	1 cut(s)	854
XmiI	GTMKAC	1 cut(s)	8
XmnI	GAANNNNTTC	2 cut(s)	73, 278
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.