Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Forward (+)

30355534 .. 30370125

Gene Structure 14592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG186900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGAGATTCGAAAGCAGAAACGAATCGAACAAGAAGAAGAGGAGCGTAGAATTAAGGCTCTGGAAGACGAAGAACTATCTCGCAAGCAACAGGTGTGCATAAATGGTGCACCCCACTTGCGGGGAAATGTGTACGTACAGTACCGTGCACTGGAGTCAGCTTTGGTGGCGCATCAATCTATCAATGGTCGCTACTTTGCTGGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030628 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

69

Amino Acids

8.11

Weight (kDa)

8.89

Isoelectric Point (pI)

67.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	121
AfaI	GTAC	3 cut(s)	134, 138, 143
AfiI	CCNNNNNNNGG	3 cut(s)	120, 121, 151
AluBI	AGCT	1 cut(s)	161
AluI	AGCT	1 cut(s)	161
Alw21I	GWGCWC	2 cut(s)	112, 151
Alw44I	GTGCAC	2 cut(s)	108, 147
ApaLI	GTGCAC	2 cut(s)	108, 147
AspLEI	GCGC	1 cut(s)	172
AsuII	TTCGAA	1 cut(s)	10
BaeGI	GKGCMC	2 cut(s)	112, 151
BbsI	GAAGAC	1 cut(s)	72
Bbv12I	GWGCWC	2 cut(s)	112, 151
BmsI	GCATC	1 cut(s)	181
BpiI	GAAGAC	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	173
Bpu14I	TTCGAA	1 cut(s)	10
BsaAI	YACGTR	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	3 cut(s)	120, 121, 151
Bse1I	ACTGG	1 cut(s)	156
BseLI	CCNNNNNNNGG	3 cut(s)	120, 121, 151
BseNI	ACTGG	1 cut(s)	156
BseRI	GAGGAG	1 cut(s)	56
BseSI	GKGCMC	2 cut(s)	112, 151
BseYI	CCCAGC	1 cut(s)	200
BsiHKAI	GWGCWC	2 cut(s)	112, 151
BslI	CCNNNNNNNGG	3 cut(s)	120, 121, 151
Bsp119I	TTCGAA	1 cut(s)	10
Bsp1286I	GDGCHC	2 cut(s)	112, 151
BspACI	CCGC	1 cut(s)	121
BspT104I	TTCGAA	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	156
Bst4CI	ACNGT	2 cut(s)	141, 146
Bst6I	CTCTTC	1 cut(s)	33
BstBAI	YACGTR	1 cut(s)	136
BstBI	TTCGAA	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstSLI	GKGCMC	2 cut(s)	112, 151
BstSNI	TACGTA	1 cut(s)	136
BstV2I	GAAGAC	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	149
Cac8I	GCNNGC	1 cut(s)	86
CfoI	GCGC	1 cut(s)	172
Csp6I	GTAC	3 cut(s)	133, 137, 142
CviJI	RGCY	2 cut(s)	59, 161
CviKI_1	RGCY	2 cut(s)	59, 161
CviQI	GTAC	3 cut(s)	133, 137, 142
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Eco105I	TACGTA	1 cut(s)	136
FaiI	YATR	1 cut(s)	101
FauI	CCCGC	1 cut(s)	114
GlaI	GCGC	1 cut(s)	171
GsaI	CCCAGC	1 cut(s)	204
GsuI	CTGGAG	1 cut(s)	173
HhaI	GCGC	1 cut(s)	172
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HinfI	GANTC	3 cut(s)	7, 24, 155
Hpy166II	GTNNAC	3 cut(s)	110, 133, 149
Hpy188III	TCNNGA	1 cut(s)	62
Hpy8I	GTNNAC	3 cut(s)	110, 133, 149
HpyCH4III	ACNGT	2 cut(s)	141, 146
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	3 cut(s)	99, 110, 149
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpySE526I	ACGT	1 cut(s)	135
HspAI	GCGC	1 cut(s)	170
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	4 cut(s)	47, 77, 137, 186
LweI	GCATC	1 cut(s)	181
MaeII	ACGT	1 cut(s)	135
MboII	GAAGA	4 cut(s)	47, 50, 77, 83
MhlI	GDGCHC	2 cut(s)	112, 151
MluCI	AATT	1 cut(s)	51
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	1 cut(s)	34
MseI	TTAA	1 cut(s)	54
MwoI	GCNNNNNNNGC	1 cut(s)	167
NspV	TTCGAA	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	7, 24
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
Ppu21I	YACGTR	1 cut(s)	136
PspFI	CCCAGC	1 cut(s)	200
RsaI	GTAC	3 cut(s)	134, 138, 143
RsaNI	GTAC	3 cut(s)	133, 137, 142
SaqAI	TTAA	1 cut(s)	54
SchI	GAGTC	1 cut(s)	164
SduI	GDGCHC	2 cut(s)	112, 151
SetI	ASST	3 cut(s)	96, 138, 163
SfaNI	GCATC	1 cut(s)	181
SfuI	TTCGAA	1 cut(s)	10
SgeI	CNNG	9 cut(s)	44, 74, 93, 97, 104, 130, 134, 158, 164
SnaBI	TACGTA	1 cut(s)	136
Sse9I	AATT	1 cut(s)	51
SsiI	CCGC	1 cut(s)	121
TaaI	ACNGT	2 cut(s)	141, 146
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	2 cut(s)	10, 27
TasI	AATT	1 cut(s)	51
TfiI	GAWTC	2 cut(s)	7, 24
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	1 cut(s)	156
TspRI	CASTG	1 cut(s)	156
VneI	GTGCAC	2 cut(s)	108, 147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.