RLG00000013669

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
35465278 .. 35470912
5635 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013669

Sequence Viewer

Length: 1293 bp
ATGTACAATGGTCCTGGCCTTACTTGGGAGCAGGATGAGGGGCTCAAGGAGCCGAGTCGTTGGGAAATATATCTGTTCTGGGGTTATTGGAGCTGTCTATCCTATATCGATTCTGACATCCTACAGTTTGGAATGTTGGCGGCAACTTTAAGAATTGAGACTAAATGTTACACTGATGAAGAAATTGAGCACTGTTATGAAGAATTTTATGAGGATGTTCATACAGAGTTCTTGAAGTTTGGAGAAATTATAAATTTCAAGGTGTGCATAAATGGTGCACCCCACTTGCGGGGAAATGTGTACATACAGTACAGTGCACTGGAGTCAGCTTTGGTGGCGCATCAATCTATCAATGGTCGCTACTTTGCTGCTAAGCAGATAAGTTGTGACTTCATCAATGTGACGAGATGGAAGGTTGCCATATGTGCGGAATATGTGAAGTCAAGGTACAAGACATGTTCCCGTGGTAGGACATGCAATTTTATCCACTGTTTCCGCAATCCTGGTGGAGACCATGAACGGGCTGATAGTGATAGATCACCCCAAAAATATTGGGTGGAAAAGATGGTTGCATTATTTGGTTATTCTGATGCATACGAGAAACAGATGATGGAGGATAACTCTGGACAGCTGAGGAACTCTAGCAAGAAGTCAATGACGGATTCACAGTGGTATGTTGTGCAAAGATCTAGTTCTAGAAATGGGAGTTGCTCAAGTTCTACTGGTTCTAGTAGAAGATATGACAATGAAAATTATGCTCCGAAGGGCACTGGCCACCATAGACCTTCAGGTGAAGAGAACGGTTACTTGAAGGACTTTAATCGCAGGAAGAACAGAAAGTATTATATTGAATCTGGTGGAGAATTGTTGTACATGGATGTAGATATGGATAGAGATATATACCATGGTCACAGAAGGAAAAGCTCAAGACAAGAAAACAGAGACCACAAGAACAAAACCTATGAAACTGAATCCGATGGGCATTTATTGGAGAGGGTACAGAACACGGTAACTGAGCATGGTAGCACCAGGAAAAGCTCAAGCCAGCAACGAAAAGCAGGAGTGCATCATGATTCCGGTCATTGTGAGAAAAAGTTCATGAAGTTGGTGGAGATTGGTCAACTAGAGACAGAGACAGAGAATCAGACCATGACAGCCGAAGTTCAGGGCACAAGAGGAAAGCGGGATGTGCAGATAAATGAGATAATCACAAGGACCATAAGAGTAAAGCTCATGATTCAGATGGAGAGTGGTCAGACAGCAACAGGAAAGGTGATGAGCACCATACAATAA

Protein Analysis

431

Amino Acids

49.87

Weight (kDa)

7.59

Isoelectric Point (pI)

49.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000557)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10320 AT1G10320
fragaria_vesca FvH4_1g01270 FvH4_5g28020
malus_domestica MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica Prupe.1G585000_v2.0.a1
pyrus_communis pycom05g24740 pycom15g39000
rosa_chinensis RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 251
AciI CCGC 5 cut(s) 140, 289, 428, 496, 1183
AcoI YGGCCR 1 cut(s) 772
AcsI RAATTY 2 cut(s) 203, 253
AcuI CTGAAG 1 cut(s) 771
AfaI GTAC 6 cut(s) 5, 302, 311, 449, 872, 999
AfiI CCNNNNNNNGG 5 cut(s) 25, 288, 289, 468, 520
AflIII ACRYGT 1 cut(s) 455
AgsI TTSAA 4 cut(s) 235, 259, 811, 851
AjnI CCWGG 3 cut(s) 13, 502, 1028
AluBI AGCT 6 cut(s) 93, 329, 631, 924, 1038, 1231
AluI AGCT 6 cut(s) 93, 329, 631, 924, 1038, 1231
Alw21I GWGCWC 4 cut(s) 192, 280, 319, 1283
Alw26I GTCTC 5 cut(s) 152, 504, 936, 1121, 1127
Alw44I GTGCAC 2 cut(s) 276, 315
AoxI GGCC 2 cut(s) 16, 772
ApaLI GTGCAC 2 cut(s) 276, 315
ApeKI GCWGC 1 cut(s) 368
ApoI RAATTY 2 cut(s) 203, 253
Asp700I GAANNNNTTC 1 cut(s) 1094
AspLEI GCGC 1 cut(s) 340
AspS9I GGNCC 2 cut(s) 11, 1215
AsuHPI GGTGA 3 cut(s) 531, 803, 1285
AvaII GGWCC 2 cut(s) 11, 1215
BaeGI GKGCMC 4 cut(s) 280, 319, 770, 1172
BalI TGGCCA 1 cut(s) 774
BanII GRGCYC 1 cut(s) 45
BarI GAAGNNNNNNTAC 2 cut(s) 431, 463
Bbv12I GWGCWC 4 cut(s) 192, 280, 319, 1283
BbvCI CCTCAGC 1 cut(s) 632
BbvI GCAGC 1 cut(s) 355
BccI CCATC 5 cut(s) 402, 559, 604, 971, 1237
BciT130I CCWGG 3 cut(s) 15, 504, 1030
BcoDI GTCTC 5 cut(s) 152, 504, 936, 1121, 1127
BfaI CTAG 5 cut(s) 642, 690, 696, 729, 1124
BfmI CTRYAG 1 cut(s) 122
BglII AGATCT 1 cut(s) 686
BisI GCNGC 2 cut(s) 141, 369
BlpI GCTNAGC 1 cut(s) 372
BlsI GCNGC 2 cut(s) 142, 370
Bme1390I CCNGG 3 cut(s) 15, 504, 1030
Bme18I GGWCC 2 cut(s) 11, 1215
BmgT120I GGNCC 2 cut(s) 11, 1215
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 3 cut(s) 15, 504, 1030
BmsI GCATC 3 cut(s) 349, 580, 1075
BplI GAGNNNNNCTC 4 cut(s) 605, 637, 1215, 1247
BpmI CTGGAG 1 cut(s) 341
Bpu10I CCTNAGC 1 cut(s) 632
Bpu1102I GCTNAGC 1 cut(s) 372
BpuEI CTTGAG 4 cut(s) 29, 697, 910, 1024
Bsa29I ATCGAT 1 cut(s) 108
BsaI GGTCTC 2 cut(s) 504, 936
BsaJI CCNNGG 2 cut(s) 463, 904
BsaWI WCCGGW 1 cut(s) 1076
Bsc4I CCNNNNNNNGG 5 cut(s) 25, 288, 289, 468, 520
Bse1I ACTGG 3 cut(s) 324, 727, 775
BseBI CCWGG 3 cut(s) 15, 504, 1030
BseCI ATCGAT 1 cut(s) 108
BseDI CCNNGG 2 cut(s) 463, 904
BseGI GGATG 5 cut(s) 40, 117, 220, 883, 1192
BseLI CCNNNNNNNGG 5 cut(s) 25, 288, 289, 468, 520
BseMII CTCAG 2 cut(s) 623, 1005
BseNI ACTGG 3 cut(s) 324, 727, 775
BseSI GKGCMC 4 cut(s) 280, 319, 770, 1172
BseXI GCAGC 1 cut(s) 355
BsgI GTGCAG 1 cut(s) 1211
BshFI GGCC 2 cut(s) 18, 774
BshVI ATCGAT 1 cut(s) 108
BsiHKAI GWGCWC 4 cut(s) 192, 280, 319, 1283
BsiSI CCGG 1 cut(s) 1077
BslI CCNNNNNNNGG 5 cut(s) 25, 288, 289, 468, 520
BsmAI GTCTC 5 cut(s) 152, 504, 936, 1121, 1127
BsnI GGCC 2 cut(s) 18, 774
Bso31I GGTCTC 2 cut(s) 504, 936
Bsp1286I GDGCHC 7 cut(s) 45, 192, 280, 319, 770, 1172, 1283
Bsp1407I TGTACA 3 cut(s) 3, 300, 870
Bsp143I GATC 2 cut(s) 536, 686
Bsp1720I GCTNAGC 1 cut(s) 372
Bsp19I CCATGG 1 cut(s) 904
BspACI CCGC 5 cut(s) 140, 289, 428, 496, 1183
BspANI GGCC 2 cut(s) 18, 774
BspCNI CTCAG 2 cut(s) 624, 1006
BspDI ATCGAT 1 cut(s) 108
BspHI TCATGA 3 cut(s) 1069, 1098, 1233
BspLI GGNNCC 1 cut(s) 51
BspTNI GGTCTC 2 cut(s) 504, 936
BsrGI TGTACA 3 cut(s) 3, 300, 870
BsrI ACTGG 3 cut(s) 324, 727, 775
BssECI CCNNGG 2 cut(s) 463, 904
BssMI GATC 2 cut(s) 536, 686
BssT1I CCWWGG 1 cut(s) 904
Bst2UI CCWGG 3 cut(s) 15, 504, 1030
Bst4CI ACNGT 8 cut(s) 126, 194, 309, 314, 491, 669, 803, 1009
Bst6I CTCTTC 1 cut(s) 789
BstAUI TGTACA 3 cut(s) 3, 300, 870
BstC8I GCNNGC 1 cut(s) 1046
BstDEI CTNAG 3 cut(s) 372, 632, 1014
BstDSI CCRYGG 2 cut(s) 463, 904
BstF5I GGATG 5 cut(s) 40, 117, 220, 883, 1192
BstHHI GCGC 1 cut(s) 340
BstKTI GATC 2 cut(s) 539, 689
BstMAI GTCTC 5 cut(s) 152, 504, 936, 1121, 1127
BstMBI GATC 2 cut(s) 536, 686
BstMWI GCNNNNNNNGC 4 cut(s) 49, 335, 425, 1189
BstNI CCWGG 3 cut(s) 15, 504, 1030
BstNSI RCATGY 2 cut(s) 459, 477
BstSCI CCNGG 3 cut(s) 13, 502, 1028
BstSFI CTRYAG 1 cut(s) 122
BstSLI GKGCMC 4 cut(s) 280, 319, 770, 1172
BstV1I GCAGC 1 cut(s) 355
BstX2I RGATCY 1 cut(s) 686
BstYI RGATCY 1 cut(s) 686
Bsu15I ATCGAT 1 cut(s) 108
BsuRI GGCC 2 cut(s) 18, 774
BsuTUI ATCGAT 1 cut(s) 108
BtgI CCRYGG 2 cut(s) 463, 904
BtsCI GGATG 5 cut(s) 40, 117, 220, 883, 1192
BtsIMutI CAGTG 7 cut(s) 171, 190, 317, 319, 487, 674, 768
Cac8I GCNNGC 1 cut(s) 1046
CciI TCATGA 3 cut(s) 1069, 1098, 1233
CfoI GCGC 1 cut(s) 340
Cfr13I GGNCC 2 cut(s) 11, 1215
ClaI ATCGAT 1 cut(s) 108
Csp6I GTAC 6 cut(s) 4, 301, 310, 448, 871, 998
CspCI CAANNNNNGTGG 2 cut(s) 487, 522
CviQI GTAC 6 cut(s) 4, 301, 310, 448, 871, 998
DdeI CTNAG 3 cut(s) 372, 632, 1014
DpnI GATC 2 cut(s) 538, 688
DpnII GATC 2 cut(s) 536, 686
EaeI YGGCCR 1 cut(s) 772
Eam1104I CTCTTC 1 cut(s) 789
EarI CTCTTC 1 cut(s) 789
Eco130I CCWWGG 1 cut(s) 904
Eco24I GRGCYC 1 cut(s) 45
Eco31I GGTCTC 2 cut(s) 504, 936
Eco47I GGWCC 2 cut(s) 11, 1215
Eco57I CTGAAG 1 cut(s) 771
EcoRII CCWGG 3 cut(s) 13, 502, 1028
EcoT14I CCWWGG 1 cut(s) 904
EcoT22I ATGCAT 1 cut(s) 595
EcoT38I GRGCYC 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 904
FauI CCCGC 2 cut(s) 282, 1176
FauNDI CATATG 1 cut(s) 422
Fnu4HI GCNGC 2 cut(s) 141, 369
FokI GGATG 5 cut(s) 47, 104, 227, 890, 1199
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 2 cut(s) 141, 369
FspBI CTAG 5 cut(s) 642, 690, 696, 729, 1124
GlaI GCGC 1 cut(s) 339
GluI GCNGC 2 cut(s) 141, 369
GsuI CTGGAG 1 cut(s) 341
HaeIII GGCC 2 cut(s) 18, 774
HapII CCGG 1 cut(s) 1077
HhaI GCGC 1 cut(s) 340
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
HincII GTYRAC 1 cut(s) 1121
HindII GTYRAC 1 cut(s) 1121
HinfI GANTC 9 cut(s) 55, 110, 323, 662, 851, 971, 1073, 1141, 1237
HpaII CCGG 1 cut(s) 1077
HphI GGTGA 3 cut(s) 531, 803, 1285
Hpy166II GTNNAC 4 cut(s) 278, 301, 317, 1121
Hpy188I TCNGA 7 cut(s) 115, 589, 762, 976, 1146, 1242, 1257
Hpy188III TCNNGA 7 cut(s) 232, 624, 696, 927, 1070, 1099, 1234
Hpy8I GTNNAC 4 cut(s) 278, 301, 317, 1121
HpyAV CCTTC 5 cut(s) 406, 757, 795, 805, 909
HpyCH4III ACNGT 8 cut(s) 126, 194, 309, 314, 491, 669, 803, 1009
HpyCH4V TGCA 9 cut(s) 267, 278, 317, 477, 572, 593, 682, 1066, 1192
HpyF10VI GCNNNNNNNGC 4 cut(s) 49, 335, 425, 1189
HpyF3I CTNAG 3 cut(s) 372, 632, 1014
HspAI GCGC 1 cut(s) 338
Kzo9I GATC 2 cut(s) 536, 686
LmnI GCTCC 4 cut(s) 28, 49, 90, 763
Lsp1109I GCAGC 1 cut(s) 355
LweI GCATC 3 cut(s) 349, 580, 1075
MaeI CTAG 5 cut(s) 642, 690, 696, 729, 1124
MaeIII GTNAC 6 cut(s) 167, 386, 400, 803, 908, 1009
MalI GATC 2 cut(s) 538, 688
MboI GATC 2 cut(s) 536, 686
MboII GAAGA 5 cut(s) 191, 212, 747, 806, 841
MflI RGATCY 1 cut(s) 686
MhlI GDGCHC 7 cut(s) 45, 192, 280, 319, 770, 1172, 1283
MlsI TGGCCA 1 cut(s) 774
MluCI AATT 8 cut(s) 153, 183, 203, 246, 253, 478, 751, 863
MluNI TGGCCA 1 cut(s) 774
MlyI GAGTC 2 cut(s) 64, 332
MnlI CCTC 6 cut(s) 31, 205, 607, 627, 987, 1169
Mox20I TGGCCA 1 cut(s) 774
Mph1103I ATGCAT 1 cut(s) 595
MroXI GAANNNNTTC 1 cut(s) 1094
MscI TGGCCA 1 cut(s) 774
MseI TTAA 2 cut(s) 149, 819
MslI CAYNNNNRTG 2 cut(s) 195, 398
Msp20I TGGCCA 1 cut(s) 774
MspA1I CMGCKG 1 cut(s) 631
MspI CCGG 1 cut(s) 1077
MspR9I CCNGG 3 cut(s) 15, 504, 1030
MvaI CCWGG 3 cut(s) 15, 504, 1030
MwoI GCNNNNNNNGC 4 cut(s) 49, 335, 425, 1189
NcoI CCATGG 1 cut(s) 904
NdeI CATATG 1 cut(s) 422
NdeII GATC 2 cut(s) 536, 686
NlaIV GGNNCC 1 cut(s) 51
NmeAIII GCCGAG 1 cut(s) 78
NmuCI GTSAC 3 cut(s) 386, 400, 908
NsiI ATGCAT 1 cut(s) 595
NspI RCATGY 2 cut(s) 459, 477
PagI TCATGA 3 cut(s) 1069, 1098, 1233
PciI ACATGT 1 cut(s) 455
PdmI GAANNNNTTC 1 cut(s) 1094
PfeI GAWTC 7 cut(s) 110, 662, 851, 971, 1073, 1141, 1237
PkrI GCNGC 2 cut(s) 142, 370
PleI GAGTC 2 cut(s) 63, 331
PpsI GAGTC 2 cut(s) 63, 331
PscI ACATGT 1 cut(s) 455
PsiI TTATAA 1 cut(s) 251
Psp6I CCWGG 3 cut(s) 13, 502, 1028
PspGI CCWGG 3 cut(s) 13, 502, 1028
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 2 cut(s) 11, 1215
PsuI RGATCY 1 cut(s) 686
PvuII CAGCTG 1 cut(s) 631
RsaI GTAC 6 cut(s) 5, 302, 311, 449, 872, 999
RsaNI GTAC 6 cut(s) 4, 301, 310, 448, 871, 998
RseI CAYNNNNRTG 2 cut(s) 195, 398
SaqAI TTAA 2 cut(s) 149, 819
SatI GCNGC 2 cut(s) 141, 369
Sau3AI GATC 2 cut(s) 536, 686
Sau96I GGNCC 2 cut(s) 11, 1215
SchI GAGTC 2 cut(s) 64, 332
ScrFI CCNGG 3 cut(s) 15, 504, 1030
SduI GDGCHC 7 cut(s) 45, 192, 280, 319, 770, 1172, 1283
SfaNI GCATC 3 cut(s) 349, 580, 1075
SfcI CTRYAG 1 cut(s) 122
SinI GGWCC 2 cut(s) 11, 1215
SmiMI CAYNNNNRTG 2 cut(s) 195, 398
SmlI CTYRAG 4 cut(s) 44, 712, 925, 1039
SmoI CTYRAG 4 cut(s) 44, 712, 925, 1039
Sse9I AATT 8 cut(s) 153, 183, 203, 246, 253, 478, 751, 863
SsiI CCGC 5 cut(s) 140, 289, 428, 496, 1183
SspI AATATT 1 cut(s) 551
SspMI CTAG 5 cut(s) 642, 690, 696, 729, 1124
StyD4I CCNGG 3 cut(s) 13, 502, 1028
StyI CCWWGG 1 cut(s) 904
TaaI ACNGT 8 cut(s) 126, 194, 309, 314, 491, 669, 803, 1009
TaqI TCGA 1 cut(s) 108
TasI AATT 8 cut(s) 153, 183, 203, 246, 253, 478, 751, 863
TatI WGTACW 4 cut(s) 3, 300, 309, 870
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 7 cut(s) 110, 662, 851, 971, 1073, 1141, 1237
Tru1I TTAA 2 cut(s) 149, 819
Tru9I TTAA 2 cut(s) 149, 819
TscAI CASTG 7 cut(s) 178, 197, 319, 324, 494, 674, 775
TseFI GTSAC 3 cut(s) 386, 400, 908
TseI GCWGC 1 cut(s) 368
Tsp45I GTSAC 3 cut(s) 386, 400, 908
TspDTI ATGAA 9 cut(s) 192, 209, 213, 382, 531, 762, 978, 1087, 1115
TspGWI ACGGA 1 cut(s) 674
TspRI CASTG 7 cut(s) 178, 197, 319, 324, 494, 674, 775
VneI GTGCAC 2 cut(s) 276, 315
VpaK11BI GGWCC 2 cut(s) 11, 1215
XapI RAATTY 2 cut(s) 203, 253
XbaI TCTAGA 1 cut(s) 695
XceI RCATGY 2 cut(s) 459, 477
XmnI GAANNNNTTC 1 cut(s) 1094
XspI CTAG 5 cut(s) 642, 690, 696, 729, 1124
Zsp2I ATGCAT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.