Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Forward (+)

39865702 .. 39866651

Gene Structure 950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1263000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTCAATTCTAACCTTGAAGTCTGAGGATTCTCTTGTTGATAATCATTCTTGTTTAATGTTGCAGACATGTTCCCGTGGTACAGCTTGCAATTTTATCCACTGTTTCCGCAATCCTGGTGGAGACTATGAATGGGCTGATGGTGATAGACCACCCCCAAAATTTTGGGCGAGAAAAATGGTTGCTTTATTTGGTTATTCTGATGCAGATGATAAACCAATGGTAGAAGAAAATTCTGGACAGCGGAGGAACTCTAGCAAGAAGTCATTGGGAGATTCTGAGAGGAAGCAGCAGGCAGGTGATGGTAACGTGACACTACAACTGCCCACATTCAGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030628 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

114

Amino Acids

12.67

Weight (kDa)

6.71

Isoelectric Point (pI)

53.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	287
Acc36I	ACCTGC	1 cut(s)	287
AciI	CCGC	2 cut(s)	109, 244
AcsI	RAATTY	2 cut(s)	161, 232
AfaI	GTAC	1 cut(s)	82
AfiI	CCNNNNNNNGG	1 cut(s)	333
AflIII	ACRYGT	1 cut(s)	68
AgsI	TTSAA	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
Alw26I	GTCTC	1 cut(s)	117
ApeKI	GCWGC	1 cut(s)	289
ApoI	RAATTY	2 cut(s)	161, 232
AsuHPI	GGTGA	2 cut(s)	155, 311
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	2 cut(s)	134, 296
BciT130I	CCWGG	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	1 cut(s)	255
BfuAI	ACCTGC	1 cut(s)	287
BisI	GCNGC	1 cut(s)	290
BlsI	GCNGC	1 cut(s)	291
Bme1390I	CCNGG	1 cut(s)	117
BmrFI	CCNGG	1 cut(s)	117
BmsI	GCATC	1 cut(s)	193
BsaJI	CCNNGG	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	76
BseLI	CCNNNNNNNGG	1 cut(s)	333
BseMII	CTCAG	2 cut(s)	15, 270
BseXI	GCAGC	1 cut(s)	301
BslI	CCNNNNNNNGG	1 cut(s)	333
BsmAI	GTCTC	1 cut(s)	117
BspACI	CCGC	2 cut(s)	109, 244
BspCNI	CTCAG	2 cut(s)	16, 271
BspMI	ACCTGC	1 cut(s)	287
BssECI	CCNNGG	1 cut(s)	76
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	104
BstC8I	GCNNGC	2 cut(s)	88, 294
BstDEI	CTNAG	2 cut(s)	24, 279
BstDSI	CCRYGG	1 cut(s)	76
BstMAI	GTCTC	1 cut(s)	117
BstNI	CCWGG	1 cut(s)	117
BstNSI	RCATGY	1 cut(s)	72
BstSCI	CCNGG	1 cut(s)	115
BstV1I	GCAGC	1 cut(s)	301
BstXI	CCANNNNNNTGG	1 cut(s)	165
BtgI	CCRYGG	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	100
BveI	ACCTGC	1 cut(s)	287
Cac8I	GCNNGC	2 cut(s)	88, 294
Csp6I	GTAC	1 cut(s)	81
CspCI	CAANNNNNGTGG	2 cut(s)	100, 135
CviAII	CATG	1 cut(s)	69
CviJI	RGCY	2 cut(s)	86, 137
CviKI_1	RGCY	2 cut(s)	86, 137
CviQI	GTAC	1 cut(s)	81
DdeI	CTNAG	2 cut(s)	24, 279
EcoRII	CCWGG	1 cut(s)	115
FaeI	CATG	1 cut(s)	72
FaiI	YATR	2 cut(s)	70, 129
FatI	CATG	1 cut(s)	68
Fnu4HI	GCNGC	1 cut(s)	290
Fsp4HI	GCNGC	1 cut(s)	290
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	1 cut(s)	290
Hin1II	CATG	1 cut(s)	72
HinfI	GANTC	2 cut(s)	29, 275
HphI	GGTGA	2 cut(s)	155, 311
Hpy188I	TCNGA	3 cut(s)	25, 202, 280
Hpy188III	TCNNGA	2 cut(s)	237, 334
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	3 cut(s)	64, 90, 206
HpyF3I	CTNAG	2 cut(s)	24, 279
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	1 cut(s)	72
LpnPI	CCDG	6 cut(s)	102, 129, 222, 278, 282, 319
Lsp1109I	GCAGC	1 cut(s)	301
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	2 cut(s)	305, 310
MboII	GAAGA	1 cut(s)	239
MluCI	AATT	5 cut(s)	6, 91, 161, 232, 337
MnlI	CCTC	3 cut(s)	19, 240, 276
MseI	TTAA	2 cut(s)	56, 340
MspA1I	CMGCKG	1 cut(s)	244
MspR9I	CCNGG	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	117
NlaIII	CATG	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	310
NspI	RCATGY	1 cut(s)	72
PaqCI	CACCTGC	1 cut(s)	287
PciI	ACATGT	1 cut(s)	68
PfeI	GAWTC	2 cut(s)	29, 275
PkrI	GCNGC	1 cut(s)	291
PscI	ACATGT	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
SaqAI	TTAA	2 cut(s)	56, 340
SatI	GCNGC	1 cut(s)	290
ScrFI	CCNGG	1 cut(s)	117
SetI	ASST	4 cut(s)	17, 88, 301, 312
SfaNI	GCATC	1 cut(s)	193
Sse9I	AATT	5 cut(s)	6, 91, 161, 232, 337
SsiI	CCGC	2 cut(s)	109, 244
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	104
TaiI	ACGT	1 cut(s)	312
TasI	AATT	5 cut(s)	6, 91, 161, 232, 337
TfiI	GAWTC	2 cut(s)	29, 275
Tru1I	TTAA	2 cut(s)	56, 340
Tru9I	TTAA	2 cut(s)	56, 340
TscAI	CASTG	1 cut(s)	107
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	1 cut(s)	289
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	1 cut(s)	144
TspRI	CASTG	1 cut(s)	107
XapI	RAATTY	2 cut(s)	161, 232
XceI	RCATGY	1 cut(s)	72
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.