Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Reverse (-)

42429694 .. 42435223

Gene Structure 5530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19812

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGGAGATTTAGAAACCCCAGCAGAAAAAGAAGGAGATGGAGGTGTTCAGCCTAAAATGGAGGCTAGGATGAGCCGGAAGGAGAAAAGGAAAACCATGAAGAAGATGAAGCGGAAGCAGACGAGGAAGGAAATCGCTCTCAAACAGCAAGAAGAAGAAGAGGCGAGGCTCCAAGATCCTCAAGAGCTTATCAACATGGAGCAAGAGGAGGCCAAGAGGTCCGAGAGTGTGAGGATCATATTCGAGGAGCGAGAGAGAGCTTGGATTGAAGCCATGGAGATTCGAAAGAAGAAACGAATCGAAGAAGAGGAACGTAGAATTAGCGCTCTGGAATACGAGGAACTATCCCGCAAGCAACAGATCAAAAATGCAAATGATGATGGTGATGATGACTGGGAGTATGTAGAAGAGGGACCTGCTGAAATCATCTGGCAGGAAAATGAAATAACTGTCAAGAAGAAAAGAGTCAAGGTTCCAAAGAGGAATAAAGACCAGCGAAGTATAAAGGAGGATTCTGATCGACCTACATCAAATCCTCTCCCTCCACAATCCGAAGCTTTTGATGATTACAAAATGCTTCTTTATCAGCGCAGCAGCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030628 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

200

Amino Acids

23.92

Weight (kDa)

5.54

Isoelectric Point (pI)

94.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	424
AciI	CCGC	2 cut(s)	112, 349
AclWI	GGATC	2 cut(s)	170, 242
AfeI	AGCGCT	1 cut(s)	325
AgsI	TTSAA	1 cut(s)	269
AluBI	AGCT	4 cut(s)	187, 260, 557, 597
AluI	AGCT	4 cut(s)	187, 260, 557, 597
AlwI	GGATC	2 cut(s)	170, 242
AlwNI	CAGNNNCTG	1 cut(s)	597
Aor51HI	AGCGCT	1 cut(s)	325
AoxI	GGCC	1 cut(s)	210
ApeKI	GCWGC	2 cut(s)	591, 594
AspLEI	GCGC	2 cut(s)	326, 591
AspS9I	GGNCC	2 cut(s)	219, 413
AsuHPI	GGTGA	1 cut(s)	395
AsuII	TTCGAA	1 cut(s)	283
AvaII	GGWCC	2 cut(s)	219, 413
BccI	CCATC	2 cut(s)	32, 374
BfaI	CTAG	1 cut(s)	66
BfoI	RGCGCY	1 cut(s)	327
BfuAI	ACCTGC	1 cut(s)	424
BisI	GCNGC	2 cut(s)	592, 595
BlsI	GCNGC	2 cut(s)	593, 596
Bme18I	GGWCC	2 cut(s)	219, 413
BmgT120I	GGNCC	2 cut(s)	219, 413
BmiI	GGNNCC	3 cut(s)	170, 414, 474
BmrI	ACTGGG	1 cut(s)	403
BmuI	ACTGGG	1 cut(s)	403
Bpu14I	TTCGAA	1 cut(s)	283
BpuEI	CTTGAG	1 cut(s)	165
BsaBI	GATNNNNATC	1 cut(s)	516
BsaJI	CCNNGG	1 cut(s)	273
Bse1I	ACTGG	1 cut(s)	398
Bse8I	GATNNNNATC	1 cut(s)	516
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	75
BseJI	GATNNNNATC	1 cut(s)	516
BseNI	ACTGG	1 cut(s)	398
BseRI	GAGGAG	2 cut(s)	221, 260
BseYI	CCCAGC	1 cut(s)	19
BshFI	GGCC	1 cut(s)	212
BsiSI	CCGG	1 cut(s)	76
BslFI	GGGAC	1 cut(s)	426
BsmFI	GGGAC	1 cut(s)	426
BsnI	GGCC	1 cut(s)	212
Bsp119I	TTCGAA	1 cut(s)	283
Bsp143I	GATC	4 cut(s)	175, 234, 360, 517
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	2 cut(s)	112, 349
BspANI	GGCC	1 cut(s)	212
BspLI	GGNNCC	3 cut(s)	170, 414, 474
BspMI	ACCTGC	1 cut(s)	424
BspPI	GGATC	2 cut(s)	170, 242
BspT104I	TTCGAA	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	398
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	4 cut(s)	175, 234, 360, 517
BssT1I	CCWWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	451
Bst6I	CTCTTC	3 cut(s)	153, 300, 402
BstBI	TTCGAA	1 cut(s)	283
BstC8I	GCNNGC	1 cut(s)	353
BstDSI	CCRYGG	1 cut(s)	273
BstF5I	GGATG	1 cut(s)	75
BstH2I	RGCGCY	1 cut(s)	327
BstHHI	GCGC	2 cut(s)	326, 591
BstKTI	GATC	4 cut(s)	178, 237, 363, 520
BstMBI	GATC	4 cut(s)	175, 234, 360, 517
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	212
BtgI	CCRYGG	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	75
BveI	ACCTGC	1 cut(s)	424
Cac8I	GCNNGC	1 cut(s)	353
CaiI	CAGNNNCTG	1 cut(s)	597
CfoI	GCGC	2 cut(s)	326, 591
Cfr13I	GGNCC	2 cut(s)	219, 413
CviAII	CATG	3 cut(s)	97, 196, 274
DpnI	GATC	4 cut(s)	177, 236, 362, 519
DpnII	GATC	4 cut(s)	175, 234, 360, 517
Eam1104I	CTCTTC	3 cut(s)	153, 300, 402
EarI	CTCTTC	3 cut(s)	153, 300, 402
Eco130I	CCWWGG	1 cut(s)	273
Eco47I	GGWCC	2 cut(s)	219, 413
Eco47III	AGCGCT	1 cut(s)	325
EcoO109I	RGGNCCY	1 cut(s)	413
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	3 cut(s)	100, 199, 277
FaiI	YATR	6 cut(s)	98, 197, 239, 275, 402, 503
FaqI	GGGAC	1 cut(s)	426
FatI	CATG	3 cut(s)	96, 195, 273
FauI	CCCGC	1 cut(s)	356
Fnu4HI	GCNGC	2 cut(s)	592, 595
FokI	GGATG	1 cut(s)	82
Fsp4HI	GCNGC	2 cut(s)	592, 595
FspBI	CTAG	1 cut(s)	66
GlaI	GCGC	2 cut(s)	325, 590
GluI	GCNGC	2 cut(s)	592, 595
GsaI	CCCAGC	1 cut(s)	23
HaeII	RGCGCY	1 cut(s)	327
HaeIII	GGCC	1 cut(s)	212
HapII	CCGG	1 cut(s)	76
HhaI	GCGC	2 cut(s)	326, 591
Hin1II	CATG	3 cut(s)	100, 199, 277
Hin6I	GCGC	2 cut(s)	324, 589
HinP1I	GCGC	2 cut(s)	324, 589
HindIII	AAGCTT	1 cut(s)	555
HinfI	GANTC	4 cut(s)	280, 297, 465, 512
HpaII	CCGG	1 cut(s)	76
HphI	GGTGA	1 cut(s)	395
Hpy188I	TCNGA	3 cut(s)	223, 517, 553
Hpy188III	TCNNGA	3 cut(s)	182, 329, 454
HpyAV	CCTTC	3 cut(s)	26, 73, 121
HpyCH4III	ACNGT	1 cut(s)	451
HpyCH4IV	ACGT	1 cut(s)	313
HpyCH4V	TGCA	1 cut(s)	371
HpySE526I	ACGT	1 cut(s)	313
Hsp92II	CATG	3 cut(s)	100, 199, 277
HspAI	GCGC	2 cut(s)	324, 589
Kzo9I	GATC	4 cut(s)	175, 234, 360, 517
LmnI	GCTCC	3 cut(s)	174, 199, 247
LpnPI	CCDG	8 cut(s)	33, 89, 314, 379, 415, 419, 429, 506
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	1 cut(s)	313
MalI	GATC	4 cut(s)	177, 236, 362, 519
MboI	GATC	4 cut(s)	175, 234, 360, 517
MflI	RGATCY	1 cut(s)	175
MluCI	AATT	1 cut(s)	318
MlyI	GAGTC	1 cut(s)	474
MspA1I	CMGCKG	1 cut(s)	597
MspI	CCGG	1 cut(s)	76
NcoI	CCATGG	1 cut(s)	273
NdeII	GATC	4 cut(s)	175, 234, 360, 517
NlaIII	CATG	3 cut(s)	100, 199, 277
NlaIV	GGNNCC	3 cut(s)	170, 414, 474
NspV	TTCGAA	1 cut(s)	283
PfeI	GAWTC	3 cut(s)	280, 297, 512
PkrI	GCNGC	2 cut(s)	593, 596
PleI	GAGTC	1 cut(s)	473
PpsI	GAGTC	1 cut(s)	473
PpuMI	RGGWCCY	1 cut(s)	413
Psp5II	RGGWCCY	1 cut(s)	413
PspFI	CCCAGC	1 cut(s)	19
PspN4I	GGNNCC	3 cut(s)	170, 414, 474
PspPI	GGNCC	2 cut(s)	219, 413
PspPPI	RGGWCCY	1 cut(s)	413
PstNI	CAGNNNCTG	1 cut(s)	597
PsuI	RGATCY	1 cut(s)	175
PvuII	CAGCTG	1 cut(s)	597
SatI	GCNGC	2 cut(s)	592, 595
Sau3AI	GATC	4 cut(s)	175, 234, 360, 517
Sau96I	GGNCC	2 cut(s)	219, 413
SchI	GAGTC	1 cut(s)	474
SfuI	TTCGAA	1 cut(s)	283
SinI	GGWCC	2 cut(s)	219, 413
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
Sse9I	AATT	1 cut(s)	318
SsiI	CCGC	2 cut(s)	112, 349
SspMI	CTAG	1 cut(s)	66
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	451
TaiI	ACGT	1 cut(s)	316
TaqI	TCGA	4 cut(s)	243, 283, 300, 520
TasI	AATT	1 cut(s)	318
TfiI	GAWTC	3 cut(s)	280, 297, 512
TseI	GCWGC	2 cut(s)	591, 594
TspDTI	ATGAA	3 cut(s)	113, 122, 456
VpaK11BI	GGWCC	2 cut(s)	219, 413
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.