Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Forward (+)

44472772 .. 44485279

Gene Structure 12508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG254700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGATTCCGACGGCTGTGATCTCCACCACTGAGCGTGGAGCTGGAATTGGCCTGGAGCAATCGGGTACGGGTAATCGGGTTGGACCTAGAGTGAGTGGGAATGAGAAGCTGCCTAGTGCTGTTGTGCTTGCTAGGGAGAGGCTACTTCGGAAACCAGGCGACGCAGGGCATTGTATATATAAAGGAGTGGTCTACTTGGTGATGATCAAAGCGTCGCCCAATCTAGAGGTTCACGATCTAGATGAGCTCCCGGAGCAGTGGCAGAGGTTCAAGCTGGCTTGGCTTTGTAAGGAGCTGCCGTCGCATAATTCTGGGGCTTTGATTCGGATTCTCAATGCCCATAAGAAGTGGATGAGGCAAGAGGACGCCAAGAACTCTGGTTACCCAGAATTTGTAATTGTTGATTTAGGGAAGAGGATTGATTTATACTCTGGAGTTGAGCATTATGAAGGATGTTGGTACTTCTTCTCCTCCAAAGAGCTTAAAGAGATGGATTACGAGGAAGAAAACCAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015979 GO:0016043 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019684 GO:0022607 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045292 GO:0046483 GO:0048564 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LAGLIDADG_2 PPR

Protein Analysis

172

Amino Acids

19.55

Weight (kDa)

6.53

Isoelectric Point (pI)

33.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	389
AcyI	GRCGYC	1 cut(s)	366
AfaI	GTAC	2 cut(s)	67, 461
AgsI	TTSAA	1 cut(s)	271
AjnI	CCWGG	2 cut(s)	51, 154
AluBI	AGCT	6 cut(s)	41, 109, 247, 274, 295, 481
AluI	AGCT	6 cut(s)	41, 109, 247, 274, 295, 481
Alw21I	GWGCWC	1 cut(s)	249
AoxI	GGCC	1 cut(s)	49
ApeKI	GCWGC	2 cut(s)	109, 295
ApoI	RAATTY	1 cut(s)	389
AspS9I	GGNCC	1 cut(s)	83
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	211
AvaII	GGWCC	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	2 cut(s)	96, 282
BccI	CCATC	1 cut(s)	484
BceAI	ACGGC	2 cut(s)	27, 283
BciT130I	CCWGG	2 cut(s)	53, 156
BclI	TGATCA	1 cut(s)	204
BcnI	CCSGG	1 cut(s)	251
BfaI	CTAG	5 cut(s)	87, 114, 132, 224, 239
BisI	GCNGC	2 cut(s)	110, 296
BlsI	GCNGC	2 cut(s)	111, 297
Bme1390I	CCNGG	3 cut(s)	53, 156, 251
Bme18I	GGWCC	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	83
BmrFI	CCNGG	3 cut(s)	53, 156, 251
BpmI	CTGGAG	2 cut(s)	74, 453
BpuMI	CCSGG	1 cut(s)	251
BsaHI	GRCGYC	1 cut(s)	366
BsaXI	ACNNNNNCTCC	4 cut(s)	284, 314, 452, 482
BseBI	CCWGG	2 cut(s)	53, 156
BseGI	GGATG	2 cut(s)	357, 458
BseMII	CTCAG	1 cut(s)	21
BseRI	GAGGAG	1 cut(s)	460
BseXI	GCAGC	2 cut(s)	96, 282
BshFI	GGCC	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	251
BsnI	GGCC	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	3 cut(s)	18, 204, 235
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	1 cut(s)	22
BssMI	GATC	3 cut(s)	18, 204, 235
BssNI	GRCGYC	1 cut(s)	366
Bst2UI	CCWGG	2 cut(s)	53, 156
Bst6I	CTCTTC	1 cut(s)	407
BstACI	GRCGYC	1 cut(s)	366
BstC8I	GCNNGC	2 cut(s)	129, 276
BstDEI	CTNAG	1 cut(s)	30
BstEII	GGTNACC	1 cut(s)	380
BstF5I	GGATG	2 cut(s)	357, 458
BstKTI	GATC	3 cut(s)	21, 207, 238
BstMBI	GATC	3 cut(s)	18, 204, 235
BstMWI	GCNNNNNNNGC	3 cut(s)	253, 280, 301
BstNI	CCWGG	2 cut(s)	53, 156
BstPI	GGTNACC	1 cut(s)	380
BstSCI	CCNGG	3 cut(s)	51, 154, 249
BstV1I	GCAGC	2 cut(s)	96, 282
BsuRI	GGCC	1 cut(s)	51
BtsCI	GGATG	2 cut(s)	357, 458
BtsI	GCAGTG	1 cut(s)	263
BtsIMutI	CAGTG	2 cut(s)	27, 263
Cac8I	GCNNGC	2 cut(s)	129, 276
Cfr13I	GGNCC	1 cut(s)	83
CseI	GACGC	3 cut(s)	170, 201, 374
Csp6I	GTAC	2 cut(s)	66, 460
CviQI	GTAC	2 cut(s)	66, 460
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	3 cut(s)	20, 206, 237
DpnII	GATC	3 cut(s)	18, 204, 235
Eam1104I	CTCTTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	407
Ecl136II	GAGCTC	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	83
Eco53kI	GAGCTC	1 cut(s)	247
Eco91I	GGTNACC	1 cut(s)	380
EcoICRI	GAGCTC	1 cut(s)	247
EcoO65I	GGTNACC	1 cut(s)	380
EcoRII	CCWGG	2 cut(s)	51, 154
EcoT38I	GRGCYC	1 cut(s)	249
FaiI	YATR	7 cut(s)	176, 178, 180, 306, 342, 427, 447
FbaI	TGATCA	1 cut(s)	204
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	2 cut(s)	110, 296
FokI	GGATG	2 cut(s)	364, 465
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	2 cut(s)	110, 296
FspBI	CTAG	5 cut(s)	87, 114, 132, 224, 239
GluI	GCNGC	2 cut(s)	110, 296
GsuI	CTGGAG	2 cut(s)	74, 453
HaeIII	GGCC	1 cut(s)	51
HapII	CCGG	1 cut(s)	251
HgaI	GACGC	3 cut(s)	170, 201, 374
Hin1I	GRCGYC	1 cut(s)	366
HinfI	GANTC	3 cut(s)	4, 322, 328
HpaII	CCGG	1 cut(s)	251
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	2 cut(s)	193, 232
Hpy188I	TCNGA	3 cut(s)	9, 150, 327
Hpy188III	TCNNGA	4 cut(s)	224, 233, 239, 432
Hpy8I	GTNNAC	2 cut(s)	193, 232
Hpy99I	CGWCG	4 cut(s)	13, 164, 217, 304
HpyAV	CCTTC	1 cut(s)	443
HpyF10VI	GCNNNNNNNGC	3 cut(s)	253, 280, 301
HpyF3I	CTNAG	1 cut(s)	30
Hsp92I	GRCGYC	1 cut(s)	366
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	3 cut(s)	18, 204, 235
LmnI	GCTCC	5 cut(s)	38, 55, 252, 253, 292
Lsp1109I	GCAGC	2 cut(s)	96, 282
MaeI	CTAG	5 cut(s)	87, 114, 132, 224, 239
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	3 cut(s)	20, 206, 237
MboI	GATC	3 cut(s)	18, 204, 235
MboII	GAAGA	3 cut(s)	424, 457, 515
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	4 cut(s)	45, 307, 389, 396
MmeI	TCCRAC	2 cut(s)	32, 61
MnlI	CCTC	9 cut(s)	132, 220, 258, 348, 355, 408, 481, 493, 507
MseI	TTAA	1 cut(s)	483
MspI	CCGG	1 cut(s)	251
MspR9I	CCNGG	3 cut(s)	53, 156, 251
MvaI	CCWGG	2 cut(s)	53, 156
MwoI	GCNNNNNNNGC	3 cut(s)	253, 280, 301
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	3 cut(s)	18, 204, 235
PfeI	GAWTC	3 cut(s)	4, 322, 328
PfoI	TCCNGGA	1 cut(s)	249
PkrI	GCNGC	2 cut(s)	111, 297
Psp124BI	GAGCTC	1 cut(s)	249
Psp6I	CCWGG	2 cut(s)	51, 154
PspEI	GGTNACC	1 cut(s)	380
PspGI	CCWGG	2 cut(s)	51, 154
PspPI	GGNCC	1 cut(s)	83
PsrI	GAACNNNNNNTAC	2 cut(s)	365, 397
RsaI	GTAC	2 cut(s)	67, 461
RsaNI	GTAC	2 cut(s)	66, 460
SacI	GAGCTC	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	2 cut(s)	110, 296
Sau3AI	GATC	3 cut(s)	18, 204, 235
Sau96I	GGNCC	1 cut(s)	83
ScrFI	CCNGG	3 cut(s)	53, 156, 251
SduI	GDGCHC	1 cut(s)	249
SinI	GGWCC	1 cut(s)	83
Sse9I	AATT	4 cut(s)	45, 307, 389, 396
SspMI	CTAG	5 cut(s)	87, 114, 132, 224, 239
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	3 cut(s)	51, 154, 249
TasI	AATT	4 cut(s)	45, 307, 389, 396
TfiI	GAWTC	3 cut(s)	4, 322, 328
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	2 cut(s)	34, 263
TseI	GCWGC	2 cut(s)	109, 295
TspDTI	ATGAA	1 cut(s)	462
TspRI	CASTG	2 cut(s)	34, 263
VpaK11BI	GGWCC	1 cut(s)	83
XapI	RAATTY	1 cut(s)	389
XbaI	TCTAGA	2 cut(s)	223, 238
XmiI	GTMKAC	1 cut(s)	192
XspI	CTAG	5 cut(s)	87, 114, 132, 224, 239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.