Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Forward (+)

35297799 .. 35300717

Gene Structure 2919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG285300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGGAGAGTCAGAAACCTCAGCAGACAAAGAAGCAGATGGAGGCGTTCAGCCTAAAACGGAGGCGGGGATGAGCCGGAAGGAGAAGTGGAAAGTCATGAAGAAGATGAAGCGGAAGCAGATGCGGAAGGAAATCACTCTCAAAGAGCGTCAGGAAGAAGAGACGAGGCCCCAAGATCCTCAAGAGCTTATCAACATGGAGCAAGAGGAGGCCAAGAGGTCCGAGAGTGTGAGGATCTTGTTCGAGGAGCGAGAGAGAGCTTGGATTGAAGCCATGGAGATTCGAAAGAGGAAACGAATCGAACAAGAAGAAGAGGAGCGTATAATTAAGGATCTGGAAGACGAAGAACTATTTCGCAAGCAACAGCGGCTGATTGAGACTGAACAAGTACTGCATTTTGGAACTGAACAGGATAAAGATCATTGTCCTTTCCATTTGAAAACTGGCCGGAGCTTGTCGATTTGGTCGGCATTGCGGCAGAGTCCTTTCTACCCAGATAAATCATCCACATTGCTTATCAAGAACATGTACAATGGTCCTGGCCTTACTTGGGAGCAGGATGAGGGGCTTGAGGGTATCAGTCACCCCAGTGAACCCAGAGCCAAGCTTGTAGTTGATCACTCTTGCAGGCATGCTTGCGACGCAGGGCATTACATATATATAGGAGTGGTCAACTTGGTGATGATCACAGCATCGCCCAATCTAGAGGTTCATGAGCTCGATGAGCTCCCAGAGCAGTGGCAGAGGTTCAAGCTGGCTTGGTTTTGTAAGGAGCTGTTGTGGTATAATTCCGGGGCTTTGATTCGGATTCTCAATGCCCAGAAGAAGTGGATAAGGCAAGAGGACTGCAAGAACTCTGGTATTGTTAACTATAGGTCTCATTGTGAAATTTTAATCATTTTCCTTCCATCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030628 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

305

Amino Acids

35.99

Weight (kDa)

5.95

Isoelectric Point (pI)

70.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	65, 112, 124, 367, 475
AclWI	GGATC	3 cut(s)	170, 242, 339
AcoI	YGGCCR	1 cut(s)	445
AcsI	RAATTY	1 cut(s)	888
AfaI	GTAC	2 cut(s)	390, 530
AfiI	CCNNNNNNNGG	1 cut(s)	550
AflIII	ACRYGT	1 cut(s)	525
AgsI	TTSAA	3 cut(s)	269, 439, 751
AjnI	CCWGG	1 cut(s)	538
AleI	CACNNNNGTG	1 cut(s)	588
AluBI	AGCT	8 cut(s)	187, 260, 453, 607, 718, 727, 754, 775
AluI	AGCT	8 cut(s)	187, 260, 453, 607, 718, 727, 754, 775
Alw21I	GWGCWC	2 cut(s)	720, 729
Alw26I	GTCTC	3 cut(s)	155, 371, 882
AlwI	GGATC	3 cut(s)	170, 242, 339
AlwNI	CAGNNNCTG	1 cut(s)	370
AoxI	GGCC	4 cut(s)	167, 210, 445, 541
ApoI	RAATTY	1 cut(s)	888
Asp700I	GAANNNNTTC	1 cut(s)	351
AspS9I	GGNCC	3 cut(s)	168, 219, 536
AsuC2I	CCSGG	1 cut(s)	793
AsuHPI	GGTGA	2 cut(s)	575, 691
AsuII	TTCGAA	1 cut(s)	283
AvaII	GGWCC	2 cut(s)	219, 536
BanII	GRGCYC	2 cut(s)	720, 729
BbsI	GAAGAC	1 cut(s)	345
Bbv12I	GWGCWC	2 cut(s)	720, 729
BbvCI	CCTCAGC	1 cut(s)	19
BccI	CCATC	2 cut(s)	32, 916
BciT130I	CCWGG	1 cut(s)	540
BclI	TGATCA	2 cut(s)	616, 684
BcnI	CCSGG	1 cut(s)	793
BcoDI	GTCTC	3 cut(s)	155, 371, 882
BfaI	CTAG	1 cut(s)	704
BfmI	CTRYAG	1 cut(s)	871
BisI	GCNGC	2 cut(s)	368, 476
BlsI	GCNGC	2 cut(s)	369, 477
BmcAI	AGTACT	1 cut(s)	390
Bme1390I	CCNGG	2 cut(s)	540, 793
Bme18I	GGWCC	2 cut(s)	219, 536
BmgT120I	GGNCC	3 cut(s)	168, 219, 536
BmiI	GGNNCC	1 cut(s)	170
BmrFI	CCNGG	2 cut(s)	540, 793
BmrI	ACTGGG	1 cut(s)	582
BmsI	GCATC	2 cut(s)	111, 701
BmuI	ACTGGG	1 cut(s)	582
BpiI	GAAGAC	1 cut(s)	345
Bpu10I	CCTNAGC	1 cut(s)	19
Bpu14I	TTCGAA	1 cut(s)	283
BpuEI	CTTGAG	2 cut(s)	165, 590
BpuMI	CCSGG	1 cut(s)	793
BsaBI	GATNNNNATC	1 cut(s)	417
BsaI	GGTCTC	1 cut(s)	882
BsaJI	CCNNGG	2 cut(s)	273, 792
BsaXI	ACNNNNNCTCC	2 cut(s)	764, 794
Bsc4I	CCNNNNNNNGG	1 cut(s)	550
Bse1I	ACTGG	2 cut(s)	448, 588
Bse3DI	GCAATG	2 cut(s)	470, 509
Bse8I	GATNNNNATC	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	2 cut(s)	273, 792
BseGI	GGATG	3 cut(s)	75, 503, 565
BseJI	GATNNNNATC	1 cut(s)	417
BseLI	CCNNNNNNNGG	1 cut(s)	550
BseMI	GCAATG	2 cut(s)	470, 509
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	2 cut(s)	448, 588
BseRI	GAGGAG	3 cut(s)	221, 260, 329
BshFI	GGCC	4 cut(s)	169, 212, 447, 543
BsiHKAI	GWGCWC	2 cut(s)	720, 729
BsiSI	CCGG	3 cut(s)	76, 448, 792
BslI	CCNNNNNNNGG	1 cut(s)	550
BsmAI	GTCTC	3 cut(s)	155, 371, 882
BsmBI	CGTCTC	1 cut(s)	155
BsnI	GGCC	4 cut(s)	169, 212, 447, 543
Bso31I	GGTCTC	1 cut(s)	882
Bsp119I	TTCGAA	1 cut(s)	283
Bsp1286I	GDGCHC	2 cut(s)	720, 729
Bsp1407I	TGTACA	1 cut(s)	528
Bsp143I	GATC	6 cut(s)	175, 234, 331, 418, 616, 684
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	5 cut(s)	65, 112, 124, 367, 475
BspANI	GGCC	4 cut(s)	169, 212, 447, 543
BspCNI	CTCAG	1 cut(s)	32
BspHI	TCATGA	2 cut(s)	96, 712
BspLI	GGNNCC	1 cut(s)	170
BspPI	GGATC	3 cut(s)	170, 242, 339
BspT104I	TTCGAA	1 cut(s)	283
BspTNI	GGTCTC	1 cut(s)	882
BsrDI	GCAATG	2 cut(s)	470, 509
BsrGI	TGTACA	1 cut(s)	528
BsrI	ACTGG	2 cut(s)	448, 588
BssECI	CCNNGG	2 cut(s)	273, 792
BssMI	GATC	6 cut(s)	175, 234, 331, 418, 616, 684
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	540
Bst6I	CTCTTC	2 cut(s)	153, 306
BstAUI	TGTACA	1 cut(s)	528
BstBI	TTCGAA	1 cut(s)	283
BstC8I	GCNNGC	5 cut(s)	359, 629, 633, 637, 756
BstDEI	CTNAG	1 cut(s)	19
BstDSI	CCRYGG	1 cut(s)	273
BstF5I	GGATG	3 cut(s)	75, 503, 565
BstKTI	GATC	6 cut(s)	178, 237, 334, 421, 619, 687
BstMAI	GTCTC	3 cut(s)	155, 371, 882
BstMBI	GATC	6 cut(s)	175, 234, 331, 418, 616, 684
BstMWI	GCNNNNNNNGC	4 cut(s)	367, 641, 724, 733
BstNI	CCWGG	1 cut(s)	540
BstNSI	RCATGY	2 cut(s)	529, 635
BstSCI	CCNGG	2 cut(s)	538, 791
BstSFI	CTRYAG	1 cut(s)	871
BstV2I	GAAGAC	1 cut(s)	345
BstX2I	RGATCY	3 cut(s)	175, 234, 331
BstXI	CCANNNNNNTGG	1 cut(s)	738
BstYI	RGATCY	3 cut(s)	175, 234, 331
BsuRI	GGCC	4 cut(s)	169, 212, 447, 543
BtgI	CCRYGG	1 cut(s)	273
BtgZI	GCGATG	1 cut(s)	678
BtsCI	GGATG	3 cut(s)	75, 503, 565
BtsI	GCAGTG	1 cut(s)	743
BtsIMutI	CAGTG	2 cut(s)	595, 743
Cac8I	GCNNGC	5 cut(s)	359, 629, 633, 637, 756
CaiI	CAGNNNCTG	1 cut(s)	370
CciI	TCATGA	2 cut(s)	96, 712
Cfr13I	GGNCC	3 cut(s)	168, 219, 536
CseI	GACGC	2 cut(s)	137, 650
Csp6I	GTAC	2 cut(s)	389, 529
CviAII	CATG	6 cut(s)	97, 196, 274, 526, 632, 713
CviQI	GTAC	2 cut(s)	389, 529
DdeI	CTNAG	1 cut(s)	19
DpnI	GATC	6 cut(s)	177, 236, 333, 420, 618, 686
DpnII	GATC	6 cut(s)	175, 234, 331, 418, 616, 684
EaeI	YGGCCR	1 cut(s)	445
Eam1104I	CTCTTC	2 cut(s)	153, 306
EarI	CTCTTC	2 cut(s)	153, 306
Ecl136II	GAGCTC	2 cut(s)	718, 727
Eco130I	CCWWGG	1 cut(s)	273
Eco24I	GRGCYC	2 cut(s)	720, 729
Eco31I	GGTCTC	1 cut(s)	882
Eco47I	GGWCC	2 cut(s)	219, 536
Eco53kI	GAGCTC	2 cut(s)	718, 727
EcoICRI	GAGCTC	2 cut(s)	718, 727
EcoO109I	RGGNCCY	1 cut(s)	168
EcoRII	CCWGG	1 cut(s)	538
EcoT14I	CCWWGG	1 cut(s)	273
EcoT38I	GRGCYC	2 cut(s)	720, 729
ErhI	CCWWGG	1 cut(s)	273
Esp3I	CGTCTC	1 cut(s)	155
FaeI	CATG	6 cut(s)	100, 199, 277, 529, 635, 716
FatI	CATG	6 cut(s)	96, 195, 273, 525, 631, 712
FauI	CCCGC	1 cut(s)	58
FbaI	TGATCA	2 cut(s)	616, 684
Fnu4HI	GCNGC	2 cut(s)	368, 476
FokI	GGATG	3 cut(s)	82, 490, 572
FriOI	GRGCYC	2 cut(s)	720, 729
Fsp4HI	GCNGC	2 cut(s)	368, 476
FspBI	CTAG	1 cut(s)	704
GluI	GCNGC	2 cut(s)	368, 476
HaeIII	GGCC	4 cut(s)	169, 212, 447, 543
HapII	CCGG	3 cut(s)	76, 448, 792
HgaI	GACGC	2 cut(s)	137, 650
Hin1II	CATG	6 cut(s)	100, 199, 277, 529, 635, 716
HincII	GTYRAC	2 cut(s)	673, 868
HindII	GTYRAC	2 cut(s)	673, 868
HindIII	AAGCTT	1 cut(s)	605
HinfI	GANTC	6 cut(s)	8, 280, 297, 481, 802, 808
HpaI	GTTAAC	1 cut(s)	868
HpaII	CCGG	3 cut(s)	76, 448, 792
HphI	GGTGA	2 cut(s)	575, 691
Hpy166II	GTNNAC	3 cut(s)	593, 673, 868
Hpy188I	TCNGA	3 cut(s)	13, 223, 807
Hpy188III	TCNNGA	7 cut(s)	97, 152, 182, 335, 520, 704, 713
Hpy8I	GTNNAC	3 cut(s)	593, 673, 868
Hpy99I	CGWCG	1 cut(s)	644
HpyAV	CCTTC	3 cut(s)	73, 121, 914
HpyCH4V	TGCA	3 cut(s)	394, 627, 849
HpyF10VI	GCNNNNNNNGC	4 cut(s)	367, 641, 724, 733
HpyF3I	CTNAG	1 cut(s)	19
Hsp92II	CATG	6 cut(s)	100, 199, 277, 529, 635, 716
Ksp22I	TGATCA	2 cut(s)	616, 684
KspAI	GTTAAC	1 cut(s)	868
Kzo9I	GATC	6 cut(s)	175, 234, 331, 418, 616, 684
LmnI	GCTCC	7 cut(s)	199, 247, 316, 450, 553, 732, 772
LweI	GCATC	2 cut(s)	111, 701
MaeI	CTAG	1 cut(s)	704
MaeIII	GTNAC	1 cut(s)	581
MalI	GATC	6 cut(s)	177, 236, 333, 420, 618, 686
MboI	GATC	6 cut(s)	175, 234, 331, 418, 616, 684
MboII	GAAGA	9 cut(s)	112, 115, 167, 170, 320, 323, 350, 356, 835
MflI	RGATCY	3 cut(s)	175, 234, 331
MhlI	GDGCHC	2 cut(s)	720, 729
MluCI	AATT	3 cut(s)	324, 787, 888
MlyI	GAGTC	2 cut(s)	17, 490
MroXI	GAANNNNTTC	1 cut(s)	351
MseI	TTAA	4 cut(s)	327, 867, 893, 916
MslI	CAYNNNNRTG	1 cut(s)	588
MspA1I	CMGCKG	1 cut(s)	367
MspI	CCGG	3 cut(s)	76, 448, 792
MspR9I	CCNGG	2 cut(s)	540, 793
MvaI	CCWGG	1 cut(s)	540
MwoI	GCNNNNNNNGC	4 cut(s)	367, 641, 724, 733
NciI	CCSGG	1 cut(s)	793
NcoI	CCATGG	1 cut(s)	273
NdeII	GATC	6 cut(s)	175, 234, 331, 418, 616, 684
NlaIII	CATG	6 cut(s)	100, 199, 277, 529, 635, 716
NlaIV	GGNNCC	1 cut(s)	170
NmuCI	GTSAC	1 cut(s)	581
NspI	RCATGY	2 cut(s)	529, 635
NspV	TTCGAA	1 cut(s)	283
OliI	CACNNNNGTG	1 cut(s)	588
PaeI	GCATGC	1 cut(s)	635
PagI	TCATGA	2 cut(s)	96, 712
PciI	ACATGT	1 cut(s)	525
PdmI	GAANNNNTTC	1 cut(s)	351
PfeI	GAWTC	4 cut(s)	280, 297, 802, 808
PkrI	GCNGC	2 cut(s)	369, 477
PleI	GAGTC	2 cut(s)	16, 489
PpsI	GAGTC	2 cut(s)	16, 489
PscI	ACATGT	1 cut(s)	525
Psp124BI	GAGCTC	2 cut(s)	720, 729
Psp6I	CCWGG	1 cut(s)	538
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	1 cut(s)	170
PspPI	GGNCC	3 cut(s)	168, 219, 536
PstNI	CAGNNNCTG	1 cut(s)	370
PsuI	RGATCY	3 cut(s)	175, 234, 331
RsaI	GTAC	2 cut(s)	390, 530
RsaNI	GTAC	2 cut(s)	389, 529
RseI	CAYNNNNRTG	1 cut(s)	588
SacI	GAGCTC	2 cut(s)	720, 729
SaqAI	TTAA	4 cut(s)	327, 867, 893, 916
SatI	GCNGC	2 cut(s)	368, 476
Sau3AI	GATC	6 cut(s)	175, 234, 331, 418, 616, 684
Sau96I	GGNCC	3 cut(s)	168, 219, 536
ScaI	AGTACT	1 cut(s)	390
SchI	GAGTC	2 cut(s)	17, 490
ScrFI	CCNGG	2 cut(s)	540, 793
SduI	GDGCHC	2 cut(s)	720, 729
SfaNI	GCATC	2 cut(s)	111, 701
SfcI	CTRYAG	1 cut(s)	871
SfuI	TTCGAA	1 cut(s)	283
SinI	GGWCC	2 cut(s)	219, 536
SmiMI	CAYNNNNRTG	1 cut(s)	588
SmlI	CTYRAG	2 cut(s)	180, 569
SmoI	CTYRAG	2 cut(s)	180, 569
SphI	GCATGC	1 cut(s)	635
Sse9I	AATT	3 cut(s)	324, 787, 888
SsiI	CCGC	5 cut(s)	65, 112, 124, 367, 475
SspMI	CTAG	1 cut(s)	704
SstI	GAGCTC	2 cut(s)	720, 729
StyD4I	CCNGG	2 cut(s)	538, 791
StyI	CCWWGG	1 cut(s)	273
TaqI	TCGA	5 cut(s)	243, 283, 300, 458, 720
TasI	AATT	3 cut(s)	324, 787, 888
TatI	WGTACW	2 cut(s)	388, 528
TauI	GCSGC	2 cut(s)	370, 478
TfiI	GAWTC	4 cut(s)	280, 297, 802, 808
Tru1I	TTAA	4 cut(s)	327, 867, 893, 916
Tru9I	TTAA	4 cut(s)	327, 867, 893, 916
TscAI	CASTG	2 cut(s)	595, 743
TseFI	GTSAC	1 cut(s)	581
Tsp45I	GTSAC	1 cut(s)	581
TspDTI	ATGAA	3 cut(s)	113, 122, 701
TspGWI	ACGGA	1 cut(s)	74
TspRI	CASTG	2 cut(s)	595, 743
VpaK11BI	GGWCC	2 cut(s)	219, 536
XapI	RAATTY	1 cut(s)	888
XbaI	TCTAGA	1 cut(s)	703
XceI	RCATGY	2 cut(s)	529, 635
XcmI	CCANNNNNNNNNTGG	1 cut(s)	440
XmnI	GAANNNNTTC	1 cut(s)	351
XspI	CTAG	1 cut(s)	704
ZrmI	AGTACT	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.