Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Forward (+)

8250316 .. 8250885

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000942

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGTTGATTTATCTGCTTCTGAAACAAGCACAAGATTTGAAGAGCACAAGACAGTTGATGCAGGGCAAAAGTATCACTTTACATTTGACAAAGTATTTGATCACGTGGCATCACTACATGATGTTTTTGTGGAAATATCGCAACTTTTCCAAAGTGCACTCGACGGCTACAAGATGGATCTTTTTTCTGCATTTTATTTTGTGCAGCTGATTGAGACTGAACAAGTTGGAACTAAACAGGATAAAGATCATTGTCCTTTCCATTTGAAAACTGGCCGGAGCTTGTCGGTTTGGTCGGCATTGCAGCAGAGTCCTTTCTACCCAGATAAATCATCCACACTGCTTATCAAGAACATGTACAATGGTCCTGGCCTTACTTGGAAGCAGGATGAGGGGCTTGAGGTCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030628 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

137

Amino Acids

15.58

Weight (kDa)

5.22

Isoelectric Point (pI)

53.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Microtub_bd	PF16796	14 - 63	6.7e-09	Microtubule binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	186
AcoI	YGGCCR	1 cut(s)	274
AcvI	CACGTG	1 cut(s)	106
AfaI	GTAC	1 cut(s)	359
AflIII	ACRYGT	1 cut(s)	354
AgsI	TTSAA	2 cut(s)	41, 268
AjnI	CCWGG	1 cut(s)	367
AluBI	AGCT	2 cut(s)	208, 282
AluI	AGCT	2 cut(s)	208, 282
Alw21I	GWGCWC	2 cut(s)	48, 160
Alw26I	GTCTC	1 cut(s)	209
Alw44I	GTGCAC	1 cut(s)	156
AlwI	GGATC	1 cut(s)	186
AoxI	GGCC	2 cut(s)	274, 370
ApaLI	GTGCAC	1 cut(s)	156
ApeKI	GCWGC	2 cut(s)	205, 304
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
AspS9I	GGNCC	1 cut(s)	365
AvaII	GGWCC	1 cut(s)	365
BaeGI	GKGCMC	1 cut(s)	160
BbrPI	CACGTG	1 cut(s)	106
Bbv12I	GWGCWC	2 cut(s)	48, 160
BbvI	GCAGC	2 cut(s)	217, 316
BccI	CCATC	1 cut(s)	169
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	369
BclI	TGATCA	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	209
BisI	GCNGC	2 cut(s)	206, 305
BlsI	GCNGC	2 cut(s)	207, 306
Bme1390I	CCNGG	1 cut(s)	369
Bme18I	GGWCC	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	365
BmrFI	CCNGG	1 cut(s)	369
BmsI	GCATC	2 cut(s)	49, 119
BsaAI	YACGTR	1 cut(s)	106
BsaBI	GATNNNNATC	1 cut(s)	246
Bse1I	ACTGG	1 cut(s)	277
Bse3DI	GCAATG	1 cut(s)	299
Bse8I	GATNNNNATC	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	369
BseGI	GGATG	2 cut(s)	332, 394
BseJI	GATNNNNATC	1 cut(s)	246
BseMI	GCAATG	1 cut(s)	299
BseNI	ACTGG	1 cut(s)	277
BseSI	GKGCMC	1 cut(s)	160
BseXI	GCAGC	2 cut(s)	217, 316
BsgI	GTGCAG	1 cut(s)	224
BshFI	GGCC	2 cut(s)	276, 372
BsiHKAI	GWGCWC	2 cut(s)	48, 160
BsiSI	CCGG	1 cut(s)	277
BsmAI	GTCTC	1 cut(s)	209
BsnI	GGCC	2 cut(s)	276, 372
Bsp1286I	GDGCHC	2 cut(s)	48, 160
Bsp1407I	TGTACA	1 cut(s)	357
Bsp143I	GATC	3 cut(s)	100, 178, 247
BspANI	GGCC	2 cut(s)	276, 372
BspPI	GGATC	1 cut(s)	186
BspQI	GCTCTTC	1 cut(s)	36
BsrDI	GCAATG	1 cut(s)	299
BsrGI	TGTACA	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	277
BssMI	GATC	3 cut(s)	100, 178, 247
Bst2UI	CCWGG	1 cut(s)	369
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	1 cut(s)	36
BstAUI	TGTACA	1 cut(s)	357
BstBAI	YACGTR	1 cut(s)	106
BstF5I	GGATG	2 cut(s)	332, 394
BstKTI	GATC	3 cut(s)	103, 181, 250
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	3 cut(s)	100, 178, 247
BstNI	CCWGG	1 cut(s)	369
BstNSI	RCATGY	1 cut(s)	358
BstSCI	CCNGG	1 cut(s)	367
BstSLI	GKGCMC	1 cut(s)	160
BstV1I	GCAGC	2 cut(s)	217, 316
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BsuRI	GGCC	2 cut(s)	276, 372
BtsCI	GGATG	2 cut(s)	332, 394
BtsI	GCAGTG	1 cut(s)	338
BtsIMutI	CAGTG	1 cut(s)	338
Cfr13I	GGNCC	1 cut(s)	365
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	2 cut(s)	119, 355
CviJI	RGCY	6 cut(s)	168, 208, 276, 282, 372, 397
CviKI_1	RGCY	6 cut(s)	168, 208, 276, 282, 372, 397
CviQI	GTAC	1 cut(s)	358
DpnI	GATC	3 cut(s)	102, 180, 249
DpnII	GATC	3 cut(s)	100, 178, 247
EaeI	YGGCCR	1 cut(s)	274
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	365
Eco72I	CACGTG	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	367
FaeI	CATG	2 cut(s)	122, 358
FaiI	YATR	2 cut(s)	120, 356
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FatI	CATG	2 cut(s)	118, 354
FbaI	TGATCA	1 cut(s)	100
Fnu4HI	GCNGC	2 cut(s)	206, 305
FokI	GGATG	2 cut(s)	319, 401
Fsp4HI	GCNGC	2 cut(s)	206, 305
GluI	GCNGC	2 cut(s)	206, 305
HaeIII	GGCC	2 cut(s)	276, 372
HapII	CCGG	1 cut(s)	277
Hin1II	CATG	2 cut(s)	122, 358
HinfI	GANTC	1 cut(s)	310
HpaII	CCGG	1 cut(s)	277
Hpy166II	GTNNAC	1 cut(s)	158
Hpy188I	TCNGA	1 cut(s)	22
Hpy188III	TCNNGA	1 cut(s)	349
Hpy8I	GTNNAC	1 cut(s)	158
Hpy99I	CGWCG	1 cut(s)	167
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	5 cut(s)	62, 158, 191, 205, 304
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	2 cut(s)	122, 358
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	3 cut(s)	100, 178, 247
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	279
LpnPI	CCDG	8 cut(s)	48, 224, 258, 290, 336, 354, 371, 381
Lsp1109I	GCAGC	2 cut(s)	217, 316
LweI	GCATC	2 cut(s)	49, 119
MaeII	ACGT	1 cut(s)	105
MalI	GATC	3 cut(s)	102, 180, 249
MboI	GATC	3 cut(s)	100, 178, 247
MboII	GAAGA	1 cut(s)	53
MflI	RGATCY	1 cut(s)	178
MhlI	GDGCHC	2 cut(s)	48, 160
MlyI	GAGTC	1 cut(s)	319
MmeI	TCCRAC	1 cut(s)	208
MnlI	CCTC	2 cut(s)	385, 394
MseI	TTAA	1 cut(s)	409
MspA1I	CMGCKG	1 cut(s)	208
MspI	CCGG	1 cut(s)	277
MspR9I	CCNGG	1 cut(s)	369
MvaI	CCWGG	1 cut(s)	369
NdeII	GATC	3 cut(s)	100, 178, 247
NlaIII	CATG	2 cut(s)	122, 358
NspI	RCATGY	1 cut(s)	358
PciI	ACATGT	1 cut(s)	354
PciSI	GCTCTTC	1 cut(s)	36
PkrI	GCNGC	2 cut(s)	207, 306
PleI	GAGTC	1 cut(s)	318
PmaCI	CACGTG	1 cut(s)	106
PmlI	CACGTG	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	318
Ppu21I	YACGTR	1 cut(s)	106
PscI	ACATGT	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	367
PspCI	CACGTG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	367
PspPI	GGNCC	1 cut(s)	365
PsuI	RGATCY	1 cut(s)	178
PvuII	CAGCTG	1 cut(s)	208
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	409
SatI	GCNGC	2 cut(s)	206, 305
Sau3AI	GATC	3 cut(s)	100, 178, 247
Sau96I	GGNCC	1 cut(s)	365
SchI	GAGTC	1 cut(s)	319
ScrFI	CCNGG	1 cut(s)	369
SduI	GDGCHC	2 cut(s)	48, 160
SetI	ASST	4 cut(s)	108, 210, 284, 405
SfaNI	GCATC	2 cut(s)	49, 119
SinI	GGWCC	1 cut(s)	365
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
StyD4I	CCNGG	1 cut(s)	367
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	1 cut(s)	162
TatI	WGTACW	1 cut(s)	357
Tru1I	TTAA	1 cut(s)	409
Tru9I	TTAA	1 cut(s)	409
TscAI	CASTG	1 cut(s)	345
TseI	GCWGC	2 cut(s)	205, 304
TspRI	CASTG	1 cut(s)	345
VneI	GTGCAC	1 cut(s)	156
VpaK11BI	GGWCC	1 cut(s)	365
XceI	RCATGY	1 cut(s)	358
XcmI	CCANNNNNNNNNTGG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.