Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Forward (+)

31417251 .. 31424590

Gene Structure 7340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG178300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGGAGGAAAGAAGTCAAAAGTAGTACGCAGCCCCAGTCTCCAACTATCTTCCGGGGATGGAAGAGCTAAGGGAAGGGGTAGAGCTGGTATAGTTGGTAGAGGGAAAGGTATATCTTTTGTTGAGCTAGATGTTTCCAGTGTTGCTAATTCTACTTCGTTGGGCTCATTACCTACTGAACCAGGAATTGAGTGTATTGCATCTATCTCTACTGCACCGAATCTTGTTACTAAAGTAACATATAGTAATTGTGCTTCTCATTTTGGAACTGAACAGGATAAAGATCATTGTCCTTTCCATTTGAAAACTGGAACTTGTCGGTTTGGTCAGCATTGCAGCAGAGTCCATTTCTACCCGGATAAATCATCCACATTGCTTATCAAGAACATGTACAATGGTCCTGGCCTTACTTGGGAGCAGGATGAGGGGCTCGAGGTCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030628 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

147

Amino Acids

15.68

Weight (kDa)

8.79

Isoelectric Point (pI)

33.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	27, 392
AfiI	CCNNNNNNNGG	1 cut(s)	412
AflIII	ACRYGT	1 cut(s)	387
AgsI	TTSAA	1 cut(s)	304
AjnI	CCWGG	2 cut(s)	181, 400
AluBI	AGCT	3 cut(s)	68, 86, 127
AluI	AGCT	3 cut(s)	68, 86, 127
Alw26I	GTCTC	1 cut(s)	44
Ama87I	CYCGRG	1 cut(s)	431
AoxI	GGCC	1 cut(s)	403
ApeKI	GCWGC	2 cut(s)	30, 336
AspS9I	GGNCC	1 cut(s)	398
AsuC2I	CCSGG	2 cut(s)	55, 356
AvaI	CYCGRG	1 cut(s)	431
AvaII	GGWCC	1 cut(s)	398
BanII	GRGCYC	2 cut(s)	167, 432
BarI	GAAGNNNNNNTAC	2 cut(s)	238, 270
BbvI	GCAGC	2 cut(s)	42, 348
BccI	CCATC	1 cut(s)	53
BciT130I	CCWGG	2 cut(s)	183, 402
BcnI	CCSGG	2 cut(s)	55, 356
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	1 cut(s)	128
BisI	GCNGC	2 cut(s)	31, 337
BlsI	GCNGC	2 cut(s)	32, 338
Bme1390I	CCNGG	4 cut(s)	55, 183, 356, 402
Bme18I	GGWCC	1 cut(s)	398
BmeT110I	CYCGRG	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	398
BmrFI	CCNGG	4 cut(s)	55, 183, 356, 402
BmrI	ACTGGG	1 cut(s)	30
BmsI	GCATC	1 cut(s)	209
BmuI	ACTGGG	1 cut(s)	30
Bpu10I	CCTNAGC	1 cut(s)	69
BpuMI	CCSGG	2 cut(s)	55, 356
BsaBI	GATNNNNATC	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	412
Bse1I	ACTGG	3 cut(s)	36, 138, 313
Bse3DI	GCAATG	2 cut(s)	331, 371
Bse8I	GATNNNNATC	1 cut(s)	282
BseBI	CCWGG	2 cut(s)	183, 402
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	3 cut(s)	64, 365, 427
BseJI	GATNNNNATC	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	412
BseMI	GCAATG	2 cut(s)	331, 371
BseNI	ACTGG	3 cut(s)	36, 138, 313
BseXI	GCAGC	2 cut(s)	42, 348
BsgI	GTGCAG	1 cut(s)	198
BshFI	GGCC	1 cut(s)	405
BsiHKCI	CYCGRG	1 cut(s)	431
BsiSI	CCGG	2 cut(s)	54, 356
BslI	CCNNNNNNNGG	1 cut(s)	412
BsmAI	GTCTC	1 cut(s)	44
BsnI	GGCC	1 cut(s)	405
BsoBI	CYCGRG	1 cut(s)	431
Bsp1286I	GDGCHC	2 cut(s)	167, 432
Bsp1407I	TGTACA	1 cut(s)	390
Bsp143I	GATC	1 cut(s)	283
BspANI	GGCC	1 cut(s)	405
BspQI	GCTCTTC	1 cut(s)	58
BsrDI	GCAATG	2 cut(s)	331, 371
BsrGI	TGTACA	1 cut(s)	390
BsrI	ACTGG	3 cut(s)	36, 138, 313
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	1 cut(s)	283
Bst2UI	CCWGG	2 cut(s)	183, 402
Bst6I	CTCTTC	1 cut(s)	58
BstAUI	TGTACA	1 cut(s)	390
BstDEI	CTNAG	1 cut(s)	69
BstF5I	GGATG	3 cut(s)	64, 365, 427
BstKTI	GATC	1 cut(s)	286
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	1 cut(s)	283
BstNI	CCWGG	2 cut(s)	183, 402
BstNSI	RCATGY	1 cut(s)	391
BstSCI	CCNGG	4 cut(s)	53, 181, 354, 400
BstV1I	GCAGC	2 cut(s)	42, 348
BsuRI	GGCC	1 cut(s)	405
BtsCI	GGATG	3 cut(s)	64, 365, 427
BtsIMutI	CAGTG	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	398
Csp6I	GTAC	2 cut(s)	26, 391
CviAII	CATG	1 cut(s)	388
CviJI	RGCY	7 cut(s)	33, 68, 86, 127, 165, 405, 430
CviKI_1	RGCY	7 cut(s)	33, 68, 86, 127, 165, 405, 430
CviQI	GTAC	2 cut(s)	26, 391
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
Eco24I	GRGCYC	2 cut(s)	167, 432
Eco47I	GGWCC	1 cut(s)	398
Eco88I	CYCGRG	1 cut(s)	431
EcoRII	CCWGG	2 cut(s)	181, 400
EcoT38I	GRGCYC	2 cut(s)	167, 432
FaeI	CATG	1 cut(s)	391
FaiI	YATR	5 cut(s)	92, 113, 241, 243, 389
FatI	CATG	1 cut(s)	387
Fnu4HI	GCNGC	2 cut(s)	31, 337
FokI	GGATG	3 cut(s)	71, 352, 434
FriOI	GRGCYC	2 cut(s)	167, 432
Fsp4HI	GCNGC	2 cut(s)	31, 337
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	2 cut(s)	31, 337
HaeIII	GGCC	1 cut(s)	405
HapII	CCGG	2 cut(s)	54, 356
Hin1II	CATG	1 cut(s)	391
HinfI	GANTC	2 cut(s)	220, 342
HpaII	CCGG	2 cut(s)	54, 356
Hpy188III	TCNNGA	1 cut(s)	382
HpyAV	CCTTC	1 cut(s)	69
HpyCH4V	TGCA	3 cut(s)	200, 215, 336
HpyF3I	CTNAG	1 cut(s)	69
Hsp92II	CATG	1 cut(s)	391
Kzo9I	GATC	1 cut(s)	283
LguI	GCTCTTC	1 cut(s)	58
LmnI	GCTCC	1 cut(s)	415
Lsp1109I	GCAGC	2 cut(s)	42, 348
LweI	GCATC	1 cut(s)	209
MaeI	CTAG	1 cut(s)	128
MaeIII	GTNAC	2 cut(s)	226, 235
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MboII	GAAGA	2 cut(s)	42, 75
MhlI	GDGCHC	2 cut(s)	167, 432
MluCI	AATT	3 cut(s)	148, 186, 247
MlyI	GAGTC	1 cut(s)	351
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	3 cut(s)	95, 418, 427
MseI	TTAA	1 cut(s)	442
MspI	CCGG	2 cut(s)	54, 356
MspR9I	CCNGG	4 cut(s)	55, 183, 356, 402
MvaI	CCWGG	2 cut(s)	183, 402
NciI	CCSGG	2 cut(s)	55, 356
NdeII	GATC	1 cut(s)	283
NlaIII	CATG	1 cut(s)	391
NspI	RCATGY	1 cut(s)	391
PaeR7I	CTCGAG	1 cut(s)	431
PciI	ACATGT	1 cut(s)	387
PciSI	GCTCTTC	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	220
PkrI	GCNGC	2 cut(s)	32, 338
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
PscI	ACATGT	1 cut(s)	387
Psp6I	CCWGG	2 cut(s)	181, 400
PspGI	CCWGG	2 cut(s)	181, 400
PspPI	GGNCC	1 cut(s)	398
PspXI	VCTCGAGB	1 cut(s)	431
RsaI	GTAC	2 cut(s)	27, 392
RsaNI	GTAC	2 cut(s)	26, 391
SapI	GCTCTTC	1 cut(s)	58
SaqAI	TTAA	1 cut(s)	442
SatI	GCNGC	2 cut(s)	31, 337
Sau3AI	GATC	1 cut(s)	283
Sau96I	GGNCC	1 cut(s)	398
SchI	GAGTC	1 cut(s)	351
ScrFI	CCNGG	4 cut(s)	55, 183, 356, 402
SduI	GDGCHC	2 cut(s)	167, 432
SetI	ASST	6 cut(s)	70, 88, 112, 129, 175, 438
SfaNI	GCATC	1 cut(s)	209
Sfr274I	CTCGAG	1 cut(s)	431
SinI	GGWCC	1 cut(s)	398
SlaI	CTCGAG	1 cut(s)	431
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
Sse9I	AATT	3 cut(s)	148, 186, 247
SspMI	CTAG	1 cut(s)	128
StyD4I	CCNGG	4 cut(s)	53, 181, 354, 400
TaqI	TCGA	1 cut(s)	432
TasI	AATT	3 cut(s)	148, 186, 247
TatI	WGTACW	1 cut(s)	390
TfiI	GAWTC	1 cut(s)	220
Tru1I	TTAA	1 cut(s)	442
Tru9I	TTAA	1 cut(s)	442
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	2 cut(s)	30, 336
TspRI	CASTG	1 cut(s)	145
VpaK11BI	GGWCC	1 cut(s)	398
XceI	RCATGY	1 cut(s)	391
XcmI	CCANNNNNNNNNTGG	1 cut(s)	305
XhoI	CTCGAG	1 cut(s)	431
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.