Rh5CG264600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000557
Physical Location & Seq
Reverse (-)
28327125 .. 28328193
1069 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG264600.1

Sequence Viewer

Length: 201 bp
ATGTCTAAAGATCTAAATCAATTCAAGGCTTCTCAATCTGGTAAGGGGCAATCATGGGCTTCAAAGATTAAGAGATTAGAGTTCAATTTTCAGAGAGCTCTCAGATTACCCAGTTCTTGGTTATCAGTAGAAGAGATTGTTTTTTATAGCAATCATGTGTTCGAGCAGTGGAATGAGAACCGACCTGTGCCAAGGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

7.82

Weight (kDa)

9.99

Isoelectric Point (pI)

67.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000557)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10320 AT1G10320
fragaria_vesca FvH4_1g01270 FvH4_5g28020
malus_domestica MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica Prupe.1G585000_v2.0.a1
pyrus_communis pycom05g24740 pycom15g39000
rosa_chinensis RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 117
AfiI CCNNNNNNNGG 1 cut(s) 117
AgsI TTSAA 3 cut(s) 25, 63, 85
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
Alw21I GWGCWC 1 cut(s) 100
BanII GRGCYC 1 cut(s) 100
Bbv12I GWGCWC 1 cut(s) 100
BglII AGATCT 1 cut(s) 10
BmrI ACTGGG 1 cut(s) 105
BmuI ACTGGG 1 cut(s) 105
BsaBI GATNNNNATC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 191
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse1I ACTGG 1 cut(s) 111
Bse8I GATNNNNATC 1 cut(s) 15
BseDI CCNNGG 1 cut(s) 191
BseJI GATNNNNATC 1 cut(s) 15
BseLI CCNNNNNNNGG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 115
BseNI ACTGG 1 cut(s) 111
BsiHKAI GWGCWC 1 cut(s) 100
BslI CCNNNNNNNGG 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 100
Bsp143I GATC 1 cut(s) 10
BspCNI CTCAG 1 cut(s) 114
BsrI ACTGG 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 1 cut(s) 10
BssT1I CCWWGG 1 cut(s) 191
Bst6I CTCTTC 1 cut(s) 126
BstDEI CTNAG 1 cut(s) 101
BstKTI GATC 1 cut(s) 13
BstMBI GATC 1 cut(s) 10
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 173
BtsIMutI CAGTG 1 cut(s) 173
CviAII CATG 2 cut(s) 54, 155
CviJI RGCY 3 cut(s) 29, 59, 98
CviKI_1 RGCY 3 cut(s) 29, 59, 98
DdeI CTNAG 1 cut(s) 101
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
Ecl136II GAGCTC 1 cut(s) 98
Eco130I CCWWGG 1 cut(s) 191
Eco24I GRGCYC 1 cut(s) 100
Eco53kI GAGCTC 1 cut(s) 98
EcoICRI GAGCTC 1 cut(s) 98
EcoT14I CCWWGG 1 cut(s) 191
EcoT38I GRGCYC 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 191
FaeI CATG 2 cut(s) 57, 158
FaiI YATR 3 cut(s) 55, 147, 156
FatI CATG 2 cut(s) 53, 154
FriOI GRGCYC 1 cut(s) 100
Hin1II CATG 2 cut(s) 57, 158
Hpy188I TCNGA 2 cut(s) 93, 104
Hpy188III TCNNGA 1 cut(s) 198
HpyF3I CTNAG 1 cut(s) 101
Hsp92II CATG 2 cut(s) 57, 158
Kzo9I GATC 1 cut(s) 10
LpnPI CCDG 2 cut(s) 24, 124
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 1 cut(s) 143
MflI RGATCY 1 cut(s) 10
MhlI GDGCHC 1 cut(s) 100
MluCI AATT 2 cut(s) 20, 85
MseI TTAA 1 cut(s) 69
NdeII GATC 1 cut(s) 10
NlaIII CATG 2 cut(s) 57, 158
PflMI CCANNNNNTGG 1 cut(s) 117
Psp124BI GAGCTC 1 cut(s) 100
PsuI RGATCY 1 cut(s) 10
SacI GAGCTC 1 cut(s) 100
SaqAI TTAA 1 cut(s) 69
Sau3AI GATC 1 cut(s) 10
SduI GDGCHC 1 cut(s) 100
SetI ASST 3 cut(s) 100, 187, 197
SgeI CNNG 8 cut(s) 37, 51, 66, 123, 129, 167, 175, 197
Sse9I AATT 2 cut(s) 20, 85
SstI GAGCTC 1 cut(s) 100
StyI CCWWGG 1 cut(s) 191
TaqI TCGA 1 cut(s) 162
TasI AATT 2 cut(s) 20, 85
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TscAI CASTG 1 cut(s) 173
TspRI CASTG 1 cut(s) 173
Van91I CCANNNNNTGG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.