Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Forward (+)

39846935 .. 39850738

Gene Structure 3804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1262900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTCAGCACAGCAGCTGATTGAGAGTGTTGCTCAACAAGTACCCCATTTTGGAACTGAACAGGATAAAGCTCATTGCCCTTTCCATTTGAAAACTGGAGCTTGTCGGTTTGGTCAGCGTTGTAGCAGAGTCCATTTCTGTCCTGATAAATCTTCCACACTGCTTATCAAGAACATGTACAATGGTCCCGGCCTTGCTTGGGAGCAGGATGAGGGGCTCGAGAGATTCATTTGTGAGATCCACTTTGGTGGGGGTTCAAGCTTTCGGCCTTGGTTCTTGGAATCAAAGATACCCCAATATTTTCTATGTGGTTGCCGTACATCTTTGTTAATGCCGTTTTGTTTATGGCTGCCGTATACTGATGAGGAGGTTGAGCGCTGCTATGAAGAATTTTATGAGGATGTGCATACGGAATTCTTGAGAAATGGTGCATTCCACTTGCGGGGAAATGTGTACATACACTACAAATCAATGGATTCAGCTGTTGTTGCTTATCAATCTGTCAATGGCCGCTACTTTGCTGGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030628 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

177

Amino Acids

20.36

Weight (kDa)

6.23

Isoelectric Point (pI)

52.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	356
AciI	CCGC	2 cut(s)	442, 511
AclWI	GGATC	1 cut(s)	232
AcoI	YGGCCR	1 cut(s)	508
AcsI	RAATTY	2 cut(s)	389, 413
AfaI	GTAC	4 cut(s)	42, 179, 319, 455
AfeI	AGCGCT	1 cut(s)	377
AfiI	CCNNNNNNNGG	3 cut(s)	50, 199, 442
AflIII	ACRYGT	1 cut(s)	174
AgsI	TTSAA	2 cut(s)	91, 258
AleI	CACNNNNGTG	1 cut(s)	246
AluBI	AGCT	5 cut(s)	16, 71, 101, 261, 482
AluI	AGCT	5 cut(s)	16, 71, 101, 261, 482
AlwI	GGATC	1 cut(s)	232
AlwNI	CAGNNNCTG	1 cut(s)	16
Ama87I	CYCGRG	1 cut(s)	218
Aor51HI	AGCGCT	1 cut(s)	377
AoxI	GGCC	3 cut(s)	190, 266, 508
ApeKI	GCWGC	3 cut(s)	13, 349, 378
ApoI	RAATTY	2 cut(s)	389, 413
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	185
AsuC2I	CCSGG	1 cut(s)	189
AvaI	CYCGRG	1 cut(s)	218
AvaII	GGWCC	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	219
BbvI	GCAGC	3 cut(s)	25, 336, 365
BceAI	ACGGC	3 cut(s)	300, 319, 337
BcnI	CCSGG	1 cut(s)	189
BfoI	RGCGCY	1 cut(s)	379
BisI	GCNGC	4 cut(s)	14, 350, 379, 511
BlsI	GCNGC	4 cut(s)	15, 351, 380, 512
Bme1390I	CCNGG	1 cut(s)	189
Bme18I	GGWCC	1 cut(s)	185
BmeT110I	CYCGRG	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	189
BplI	GAGNNNNNCTC	2 cut(s)	16, 48
BpmI	CTGGAG	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	439
BpuMI	CCSGG	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 199, 442
Bse1I	ACTGG	1 cut(s)	100
Bse3DI	GCAATG	1 cut(s)	73
BseDI	CCNNGG	1 cut(s)	269
BseGI	GGATG	2 cut(s)	214, 406
BseLI	CCNNNNNNNGG	3 cut(s)	50, 199, 442
BseMI	GCAATG	1 cut(s)	73
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	1 cut(s)	380
BseXI	GCAGC	3 cut(s)	25, 336, 365
BseYI	CCCAGC	1 cut(s)	521
BshFI	GGCC	3 cut(s)	192, 268, 510
BsiHKCI	CYCGRG	1 cut(s)	218
BsiSI	CCGG	1 cut(s)	189
BslFI	GGGAC	1 cut(s)	171
BslI	CCNNNNNNNGG	3 cut(s)	50, 199, 442
BsmFI	GGGAC	1 cut(s)	171
BsmI	GAATGC	1 cut(s)	431
BsnI	GGCC	3 cut(s)	192, 268, 510
BsoBI	CYCGRG	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp1407I	TGTACA	2 cut(s)	177, 453
Bsp143I	GATC	1 cut(s)	237
BspACI	CCGC	2 cut(s)	442, 511
BspANI	GGCC	3 cut(s)	192, 268, 510
BspLI	GGNNCC	1 cut(s)	187
BspPI	GGATC	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	73
BsrGI	TGTACA	2 cut(s)	177, 453
BsrI	ACTGG	1 cut(s)	100
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	1 cut(s)	237
BssNAI	GTATAC	1 cut(s)	357
BssT1I	CCWWGG	1 cut(s)	269
Bst1107I	GTATAC	1 cut(s)	357
BstAUI	TGTACA	2 cut(s)	177, 453
BstF5I	GGATG	2 cut(s)	214, 406
BstH2I	RGCGCY	1 cut(s)	379
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	1 cut(s)	240
BstMBI	GATC	1 cut(s)	237
BstMWI	GCNNNNNNNGC	1 cut(s)	488
BstNSI	RCATGY	1 cut(s)	178
BstSCI	CCNGG	1 cut(s)	187
BstV1I	GCAGC	3 cut(s)	25, 336, 365
BstX2I	RGATCY	1 cut(s)	237
BstXI	CCANNNNNNTGG	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	237
BstZ17I	GTATAC	1 cut(s)	357
BsuRI	GGCC	3 cut(s)	192, 268, 510
BtsCI	GGATG	2 cut(s)	214, 406
BtsI	GCAGTG	1 cut(s)	158
BtsIMutI	CAGTG	1 cut(s)	158
CaiI	CAGNNNCTG	1 cut(s)	16
CfoI	GCGC	1 cut(s)	378
Cfr13I	GGNCC	1 cut(s)	185
Csp6I	GTAC	4 cut(s)	41, 178, 318, 454
CviAII	CATG	1 cut(s)	175
CviQI	GTAC	4 cut(s)	41, 178, 318, 454
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
EaeI	YGGCCR	1 cut(s)	508
Eco130I	CCWWGG	1 cut(s)	269
Eco24I	GRGCYC	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	185
Eco47III	AGCGCT	1 cut(s)	377
Eco88I	CYCGRG	1 cut(s)	218
EcoRI	GAATTC	1 cut(s)	413
EcoT14I	CCWWGG	1 cut(s)	269
EcoT38I	GRGCYC	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	269
FaeI	CATG	1 cut(s)	178
FaiI	YATR	8 cut(s)	176, 307, 346, 357, 384, 396, 408, 458
FaqI	GGGAC	1 cut(s)	171
FatI	CATG	1 cut(s)	174
FauI	CCCGC	1 cut(s)	435
FblI	GTMKAC	1 cut(s)	356
Fnu4HI	GCNGC	4 cut(s)	14, 350, 379, 511
FokI	GGATG	2 cut(s)	221, 413
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	4 cut(s)	14, 350, 379, 511
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	4 cut(s)	14, 350, 379, 511
GsaI	CCCAGC	1 cut(s)	525
GsuI	CTGGAG	1 cut(s)	117
HaeII	RGCGCY	1 cut(s)	379
HaeIII	GGCC	3 cut(s)	192, 268, 510
HapII	CCGG	1 cut(s)	189
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	1 cut(s)	178
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HindIII	AAGCTT	1 cut(s)	259
HinfI	GANTC	4 cut(s)	129, 225, 281, 476
HpaII	CCGG	1 cut(s)	189
Hpy166II	GTNNAC	2 cut(s)	357, 454
Hpy188III	TCNNGA	4 cut(s)	143, 169, 220, 418
Hpy8I	GTNNAC	2 cut(s)	357, 454
HpyCH4V	TGCA	2 cut(s)	406, 431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	488
Hsp92II	CATG	1 cut(s)	178
HspAI	GCGC	1 cut(s)	376
Kzo9I	GATC	1 cut(s)	237
LmnI	GCTCC	2 cut(s)	98, 202
LpnPI	CCDG	6 cut(s)	47, 81, 156, 191, 202, 507
Lsp1109I	GCAGC	3 cut(s)	25, 336, 365
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MboII	GAAGA	2 cut(s)	144, 398
MflI	RGATCY	1 cut(s)	237
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	2 cut(s)	389, 413
MlyI	GAGTC	1 cut(s)	138
MnlI	CCTC	4 cut(s)	205, 358, 361, 391
MseI	TTAA	1 cut(s)	329
MslI	CAYNNNNRTG	1 cut(s)	246
MspA1I	CMGCKG	2 cut(s)	16, 482
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	189
Mva1269I	GAATGC	1 cut(s)	431
MwoI	GCNNNNNNNGC	1 cut(s)	488
NciI	CCSGG	1 cut(s)	189
NdeII	GATC	1 cut(s)	237
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	1 cut(s)	187
NspI	RCATGY	1 cut(s)	178
OliI	CACNNNNGTG	1 cut(s)	246
PaeR7I	CTCGAG	1 cut(s)	218
PciI	ACATGT	1 cut(s)	174
PctI	GAATGC	1 cut(s)	431
PfeI	GAWTC	3 cut(s)	225, 281, 476
PkrI	GCNGC	4 cut(s)	15, 351, 380, 512
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
PscI	ACATGT	1 cut(s)	174
PspFI	CCCAGC	1 cut(s)	521
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	185
PstNI	CAGNNNCTG	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	237
PvuII	CAGCTG	2 cut(s)	16, 482
RsaI	GTAC	4 cut(s)	42, 179, 319, 455
RsaNI	GTAC	4 cut(s)	41, 178, 318, 454
RseI	CAYNNNNRTG	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	4 cut(s)	14, 350, 379, 511
Sau3AI	GATC	1 cut(s)	237
Sau96I	GGNCC	1 cut(s)	185
SchI	GAGTC	1 cut(s)	138
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	6 cut(s)	18, 73, 103, 263, 372, 484
Sfr274I	CTCGAG	1 cut(s)	218
SinI	GGWCC	1 cut(s)	185
SlaI	CTCGAG	1 cut(s)	218
SmiMI	CAYNNNNRTG	1 cut(s)	246
SmlI	CTYRAG	2 cut(s)	218, 418
SmoI	CTYRAG	2 cut(s)	218, 418
Sse9I	AATT	2 cut(s)	389, 413
SsiI	CCGC	2 cut(s)	442, 511
SspI	AATATT	1 cut(s)	299
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	1 cut(s)	269
TaqI	TCGA	1 cut(s)	219
TasI	AATT	2 cut(s)	389, 413
TatI	WGTACW	2 cut(s)	177, 453
TauI	GCSGC	1 cut(s)	513
TfiI	GAWTC	3 cut(s)	225, 281, 476
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TscAI	CASTG	1 cut(s)	165
TseI	GCWGC	3 cut(s)	13, 349, 378
TspDTI	ATGAA	2 cut(s)	217, 399
TspGWI	ACGGA	1 cut(s)	425
TspRI	CASTG	1 cut(s)	165
VpaK11BI	GGWCC	1 cut(s)	185
XapI	RAATTY	2 cut(s)	389, 413
XceI	RCATGY	1 cut(s)	178
XcmI	CCANNNNNNNNNTGG	1 cut(s)	92
XhoI	CTCGAG	1 cut(s)	218
XmiI	GTMKAC	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.