Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Reverse (-)

42975260 .. 42975834

Gene Structure 575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG354600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGACTTATGCAAATTTTACCATAGGCGACGCAGGGCATTGCATATATATAGGAGTGGTCTACTTGGTGATGATCACAGCATCGCCCAATCTAGAGGTTCACGAGCTGGATGAGCTCCTGGAGCAGTGGCGGAGGTTCAAGCTGGCTTGGCTTTGTAAGGAGCTGCCGTTGCATAATTCCGGGGCTTTGATTCGGATTCTCAATGCCCAGAAGAAGTGGATGAGGCAAGAGGATGCCAAGAACTCTGGTATTGTTAACTATAGGTCTCATTGTGAAATTATAATCATTTTCCTTCCATCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015979 GO:0016043 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019684 GO:0022607 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045292 GO:0046483 GO:0048564 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LAGLIDADG_2 PPR

Protein Analysis

101

Amino Acids

11.67

Weight (kDa)

6.89

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	281
AccI	GTMKAC	1 cut(s)	60
AciI	CCGC	1 cut(s)	130
AcsI	RAATTY	1 cut(s)	13
AgsI	TTSAA	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	4 cut(s)	106, 115, 142, 163
AluI	AGCT	4 cut(s)	106, 115, 142, 163
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	1 cut(s)	270
ApeKI	GCWGC	1 cut(s)	163
ApoI	RAATTY	1 cut(s)	13
AsuC2I	CCSGG	1 cut(s)	181
AsuHPI	GGTGA	1 cut(s)	79
BanII	GRGCYC	1 cut(s)	117
BauI	CACGAG	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	150
BccI	CCATC	1 cut(s)	304
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	119
BclI	TGATCA	1 cut(s)	72
BcnI	CCSGG	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	270
BfaI	CTAG	1 cut(s)	92
BfmI	CTRYAG	1 cut(s)	259
BisI	GCNGC	1 cut(s)	164
BlsI	GCNGC	1 cut(s)	165
Bme1390I	CCNGG	2 cut(s)	119, 181
BmrFI	CCNGG	2 cut(s)	119, 181
BmsI	GCATC	2 cut(s)	89, 223
BpmI	CTGGAG	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	181
BsaI	GGTCTC	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	180
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bse3DI	GCAATG	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	3 cut(s)	115, 225, 238
BseMI	GCAATG	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	180
BsmAI	GTCTC	1 cut(s)	270
Bso31I	GGTCTC	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	1 cut(s)	72
BspACI	CCGC	1 cut(s)	130
BspTNI	GGTCTC	1 cut(s)	270
BsrDI	GCAATG	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	1 cut(s)	72
BssSI	CACGAG	1 cut(s)	101
Bst2BI	CACGAG	1 cut(s)	101
Bst2UI	CCWGG	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	144
BstF5I	GGATG	3 cut(s)	115, 225, 238
BstKTI	GATC	1 cut(s)	75
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	1 cut(s)	72
BstMWI	GCNNNNNNNGC	4 cut(s)	112, 121, 148, 169
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	2 cut(s)	117, 179
BstSFI	CTRYAG	1 cut(s)	259
BstV1I	GCAGC	1 cut(s)	150
BtgZI	GCGATG	1 cut(s)	66
BtsCI	GGATG	3 cut(s)	115, 225, 238
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	131
Cac8I	GCNNGC	1 cut(s)	144
CseI	GACGC	1 cut(s)	38
CviJI	RGCY	7 cut(s)	106, 115, 142, 146, 151, 163, 185
CviKI_1	RGCY	7 cut(s)	106, 115, 142, 146, 151, 163, 185
DpnI	GATC	1 cut(s)	74
DpnII	GATC	1 cut(s)	72
EciI	GGCGGA	1 cut(s)	145
Ecl136II	GAGCTC	1 cut(s)	115
Eco24I	GRGCYC	1 cut(s)	117
Eco31I	GGTCTC	1 cut(s)	270
Eco53kI	GAGCTC	1 cut(s)	115
EcoICRI	GAGCTC	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	117
EcoT38I	GRGCYC	1 cut(s)	117
FaiI	YATR	9 cut(s)	9, 23, 44, 46, 48, 50, 174, 261, 281
FbaI	TGATCA	1 cut(s)	72
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	1 cut(s)	164
FokI	GGATG	3 cut(s)	122, 232, 245
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	164
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	1 cut(s)	164
GsuI	CTGGAG	1 cut(s)	140
HapII	CCGG	1 cut(s)	180
HgaI	GACGC	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	2 cut(s)	190, 196
HpaI	GTTAAC	1 cut(s)	256
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	3 cut(s)	61, 100, 256
Hpy188I	TCNGA	1 cut(s)	195
Hpy188III	TCNNGA	2 cut(s)	92, 101
Hpy8I	GTNNAC	3 cut(s)	61, 100, 256
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	1 cut(s)	302
HpyCH4V	TGCA	3 cut(s)	11, 42, 172
HpyF10VI	GCNNNNNNNGC	4 cut(s)	112, 121, 148, 169
Ksp22I	TGATCA	1 cut(s)	72
KspAI	GTTAAC	1 cut(s)	256
Kzo9I	GATC	1 cut(s)	72
LmnI	GCTCC	3 cut(s)	120, 121, 160
LpnPI	CCDG	8 cut(s)	18, 92, 104, 128, 131, 193, 221, 231
Lsp1109I	GCAGC	1 cut(s)	150
LweI	GCATC	2 cut(s)	89, 223
MaeI	CTAG	1 cut(s)	92
MalI	GATC	1 cut(s)	74
MboI	GATC	1 cut(s)	72
MboII	GAAGA	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	3 cut(s)	13, 175, 276
MnlI	CCTC	4 cut(s)	88, 126, 216, 223
MseI	TTAA	2 cut(s)	255, 304
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	2 cut(s)	119, 181
MvaI	CCWGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	4 cut(s)	112, 121, 148, 169
NciI	CCSGG	1 cut(s)	181
NdeII	GATC	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	190, 196
PfoI	TCCNGGA	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	165
PsiI	TTATAA	1 cut(s)	281
Psp124BI	GAGCTC	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
SacI	GAGCTC	1 cut(s)	117
SaqAI	TTAA	2 cut(s)	255, 304
SatI	GCNGC	1 cut(s)	164
Sau3AI	GATC	1 cut(s)	72
ScrFI	CCNGG	2 cut(s)	119, 181
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	7 cut(s)	99, 108, 117, 137, 144, 165, 266
SfaNI	GCATC	2 cut(s)	89, 223
SfcI	CTRYAG	1 cut(s)	259
Sse9I	AATT	3 cut(s)	13, 175, 276
SsiI	CCGC	1 cut(s)	130
SspMI	CTAG	1 cut(s)	92
SstI	GAGCTC	1 cut(s)	117
StyD4I	CCNGG	2 cut(s)	117, 179
TasI	AATT	3 cut(s)	13, 175, 276
TfiI	GAWTC	2 cut(s)	190, 196
Tru1I	TTAA	2 cut(s)	255, 304
Tru9I	TTAA	2 cut(s)	255, 304
TscAI	CASTG	1 cut(s)	131
TseI	GCWGC	1 cut(s)	163
TspRI	CASTG	1 cut(s)	131
XapI	RAATTY	1 cut(s)	13
XbaI	TCTAGA	1 cut(s)	91
XmiI	GTMKAC	1 cut(s)	60
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.