Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Reverse (-)

79125220 .. 79128908

Gene Structure 3689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG562800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTTTTTAGAGAAATTGGGAGCTGAGGTTATTCTAATTCTAATTCAAGGAGTGTTTCTGGTGAAGCAGTTTGATTTGGAGTGTGATCCTTGCCAATTAAAGGGTATCAGTCACCCCAACGAACCCAAAGCAAAGAAGAAGTGGATGAGGCAAGAGGATGCCAAGAACTCTGGTATTTTTAAGGATTATGATACCAAGAACTCTGGCGACGCAGGGTATTACATATATATAGGAGTGGTCTACTTGGTGATGATCATAGCATCGCCCAATCTAGAGGTTCATGAGCTGGATGAGCTCCCAGAGCAGTGGCGGAGGTTCAAGCTGGCTTGGCTTTGTAATGAGCTGCTGTCGCATAATTCCGGGGCTTTGTTTCGGATTCTCAATGCCCAGAAGAAGTGGATGAGGCAAGAGGACACCAAGAACTCTGGTATTGTTAACTATAGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015979 GO:0016043 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019684 GO:0022607 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045292 GO:0046483 GO:0048564 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LAGLIDADG_2 PPR

Protein Analysis

149

Amino Acids

17.32

Weight (kDa)

7.69

Isoelectric Point (pI)

34.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	240
AciI	CCGC	1 cut(s)	310
AclWI	GGATC	1 cut(s)	80
AfiI	CCNNNNNNNGG	1 cut(s)	100
AgsI	TTSAA	2 cut(s)	47, 319
AluBI	AGCT	5 cut(s)	23, 286, 295, 322, 343
AluI	AGCT	5 cut(s)	23, 286, 295, 322, 343
Alw21I	GWGCWC	1 cut(s)	297
AlwI	GGATC	1 cut(s)	80
ApeKI	GCWGC	1 cut(s)	343
AsuC2I	CCSGG	1 cut(s)	361
AsuHPI	GGTGA	3 cut(s)	73, 104, 259
BanII	GRGCYC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	297
BbvCI	CCTCAGC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	330
BclI	TGATCA	1 cut(s)	252
BcnI	CCSGG	1 cut(s)	361
BfaI	CTAG	1 cut(s)	272
BfmI	CTRYAG	1 cut(s)	439
BisI	GCNGC	1 cut(s)	344
BlsI	GCNGC	1 cut(s)	345
Bme1390I	CCNGG	1 cut(s)	361
BmrFI	CCNGG	1 cut(s)	361
BmsI	GCATC	2 cut(s)	148, 269
Bpu10I	CCTNAGC	1 cut(s)	24
BpuMI	CCSGG	1 cut(s)	361
BsaJI	CCNNGG	1 cut(s)	360
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	360
BseGI	GGATG	4 cut(s)	150, 163, 295, 405
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMII	CTCAG	1 cut(s)	15
BseXI	GCAGC	1 cut(s)	330
BsiHKAI	GWGCWC	1 cut(s)	297
BsiSI	CCGG	1 cut(s)	360
BslI	CCNNNNNNNGG	1 cut(s)	100
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp143I	GATC	2 cut(s)	85, 252
BspACI	CCGC	1 cut(s)	310
BspCNI	CTCAG	1 cut(s)	16
BspHI	TCATGA	1 cut(s)	280
BspPI	GGATC	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	360
BssMI	GATC	2 cut(s)	85, 252
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	1 cut(s)	24
BstF5I	GGATG	4 cut(s)	150, 163, 295, 405
BstKTI	GATC	2 cut(s)	88, 255
BstMBI	GATC	2 cut(s)	85, 252
BstMWI	GCNNNNNNNGC	4 cut(s)	292, 301, 328, 349
BstSCI	CCNGG	1 cut(s)	359
BstSFI	CTRYAG	1 cut(s)	439
BstV1I	GCAGC	1 cut(s)	330
BstXI	CCANNNNNNTGG	1 cut(s)	306
BtgZI	GCGATG	1 cut(s)	246
BtsCI	GGATG	4 cut(s)	150, 163, 295, 405
BtsI	GCAGTG	1 cut(s)	311
BtsIMutI	CAGTG	1 cut(s)	311
Cac8I	GCNNGC	1 cut(s)	324
CciI	TCATGA	1 cut(s)	280
CseI	GACGC	1 cut(s)	218
CviAII	CATG	1 cut(s)	281
CviJI	RGCY	8 cut(s)	23, 286, 295, 322, 326, 331, 343, 365
CviKI_1	RGCY	8 cut(s)	23, 286, 295, 322, 326, 331, 343, 365
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	2 cut(s)	87, 254
DpnII	GATC	2 cut(s)	85, 252
EciI	GGCGGA	1 cut(s)	325
Ecl136II	GAGCTC	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	297
Eco53kI	GAGCTC	1 cut(s)	295
EcoICRI	GAGCTC	1 cut(s)	295
EcoT38I	GRGCYC	1 cut(s)	297
FaeI	CATG	1 cut(s)	284
FaiI	YATR	9 cut(s)	189, 224, 226, 228, 230, 257, 282, 354, 441
FatI	CATG	1 cut(s)	280
FbaI	TGATCA	1 cut(s)	252
FblI	GTMKAC	1 cut(s)	240
Fnu4HI	GCNGC	1 cut(s)	344
FokI	GGATG	4 cut(s)	157, 170, 302, 412
FriOI	GRGCYC	1 cut(s)	297
Fsp4HI	GCNGC	1 cut(s)	344
FspBI	CTAG	1 cut(s)	272
GluI	GCNGC	1 cut(s)	344
HapII	CCGG	1 cut(s)	360
HgaI	GACGC	1 cut(s)	218
Hin1II	CATG	1 cut(s)	284
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HinfI	GANTC	1 cut(s)	376
HpaI	GTTAAC	1 cut(s)	436
HpaII	CCGG	1 cut(s)	360
HphI	GGTGA	3 cut(s)	73, 104, 259
Hpy166II	GTNNAC	2 cut(s)	241, 436
Hpy188I	TCNGA	1 cut(s)	375
Hpy188III	TCNNGA	2 cut(s)	272, 281
Hpy8I	GTNNAC	2 cut(s)	241, 436
Hpy99I	CGWCG	1 cut(s)	212
HpyF10VI	GCNNNNNNNGC	4 cut(s)	292, 301, 328, 349
HpyF3I	CTNAG	1 cut(s)	24
Hsp92II	CATG	1 cut(s)	284
Ksp22I	TGATCA	1 cut(s)	252
KspAI	GTTAAC	1 cut(s)	436
Kzo9I	GATC	2 cut(s)	85, 252
LmnI	GCTCC	2 cut(s)	20, 300
Lsp1109I	GCAGC	1 cut(s)	330
LweI	GCATC	2 cut(s)	148, 269
MaeI	CTAG	1 cut(s)	272
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	2 cut(s)	87, 254
MboI	GATC	2 cut(s)	85, 252
MboII	GAAGA	2 cut(s)	148, 403
MhlI	GDGCHC	1 cut(s)	297
MluCI	AATT	5 cut(s)	14, 36, 42, 95, 355
MnlI	CCTC	7 cut(s)	19, 141, 148, 268, 306, 396, 403
MseI	TTAA	3 cut(s)	98, 180, 435
MspI	CCGG	1 cut(s)	360
MspR9I	CCNGG	1 cut(s)	361
MwoI	GCNNNNNNNGC	4 cut(s)	292, 301, 328, 349
NciI	CCSGG	1 cut(s)	361
NdeII	GATC	2 cut(s)	85, 252
NlaIII	CATG	1 cut(s)	284
NmuCI	GTSAC	1 cut(s)	110
PagI	TCATGA	1 cut(s)	280
PfeI	GAWTC	1 cut(s)	376
PkrI	GCNGC	1 cut(s)	345
Psp124BI	GAGCTC	1 cut(s)	297
SacI	GAGCTC	1 cut(s)	297
SaqAI	TTAA	3 cut(s)	98, 180, 435
SatI	GCNGC	1 cut(s)	344
Sau3AI	GATC	2 cut(s)	85, 252
ScrFI	CCNGG	1 cut(s)	361
SduI	GDGCHC	1 cut(s)	297
SetI	ASST	8 cut(s)	25, 30, 279, 288, 297, 317, 324, 345
SfaNI	GCATC	2 cut(s)	148, 269
SfcI	CTRYAG	1 cut(s)	439
Sse9I	AATT	5 cut(s)	14, 36, 42, 95, 355
SsiI	CCGC	1 cut(s)	310
SspMI	CTAG	1 cut(s)	272
SstI	GAGCTC	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	359
TasI	AATT	5 cut(s)	14, 36, 42, 95, 355
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	3 cut(s)	98, 180, 435
Tru9I	TTAA	3 cut(s)	98, 180, 435
TscAI	CASTG	1 cut(s)	311
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	1 cut(s)	343
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	1 cut(s)	269
TspRI	CASTG	1 cut(s)	311
XbaI	TCTAGA	1 cut(s)	271
XmiI	GTMKAC	1 cut(s)	240
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.