Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Reverse (-)

42425329 .. 42428717

Gene Structure 3389 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19810

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGTTGGCAGTTAGAACCATAAGGGATGAAGGGAACTCTAGCTTTGTCCCTTGTGATTCTTTAGATTCAAGGATGTATGGCTCGGCTTTGTGCATCTACATTGACGAAGAAATTGAGCGCTGTTATGAAGACTTTTACGAGGATGTTCATACAGAGTTCTTGAAGTTCGGAGAAATTATAAATTTCAAGGTGTGCATAAATGGTGCACCCCACTTGCGGGGAAATGTGTACGTACAGTACAGTGCACTGGAGTCAGCTTTGGTTGCGCATCAATCTGTCAATGGTCGCTACTTTGCTGGGAAGCAGATAAGTTGTGACTTCATCAATGTGACCAGATGGAAGGTTGCCATATGTGGGGAATATGTGAAGTCGAGATACAAGACATGTTCCCGTGGTAGGACATGCAATTTTATCCACTGTTTCCGCAATCCTGGTGGAGAGTATGAATGGGCTGATAGTGATAGGCCACCCCCAAAATATTGGGTGGAAAAGATGGTTGCATTATTTGGTTATTCTGATGCATACAAGAAACATATGATGGAGGATAACTCTGGACAGCTGAGGAACTCTAGCAAGAAGTCAATGACAGATTCACAGAGGTATGTTGTGCAAAGATCTAGTTCTCGAGATGGGAGTTACTCAAGTTTTGCTGGTTCTAGTAGAAGATACGACAATGAAAATTATGCTCCGAAGGGCACCGGCCACCGTAGACCTTCAGGTGAAGAGAATGCTTACTTGAAGGACTTTAATCACAGGAAGAACAGAAAGTATTATATTGAAAGAGTTTCAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030628 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

264

Amino Acids

30.63

Weight (kDa)

8.84

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	179
Acc16I	TGCGCA	1 cut(s)	267
AccB1I	GGYRCC	1 cut(s)	695
AccI	GTMKAC	1 cut(s)	709
AciI	CCGC	2 cut(s)	217, 424
AcoI	YGGCCR	1 cut(s)	700
AcsI	RAATTY	1 cut(s)	181
AcuI	CTGAAG	1 cut(s)	699
AfaI	GTAC	3 cut(s)	230, 234, 239
AfeI	AGCGCT	1 cut(s)	119
AfiI	CCNNNNNNNGG	4 cut(s)	216, 217, 354, 396
AflIII	ACRYGT	1 cut(s)	383
AgsI	TTSAA	6 cut(s)	69, 163, 187, 739, 779, 789
AjnI	CCWGG	1 cut(s)	430
AluBI	AGCT	3 cut(s)	42, 257, 559
AluI	AGCT	3 cut(s)	42, 257, 559
Alw21I	GWGCWC	2 cut(s)	208, 247
Alw44I	GTGCAC	2 cut(s)	204, 243
Ama87I	CYCGRG	1 cut(s)	624
Aor51HI	AGCGCT	1 cut(s)	119
AoxI	GGCC	2 cut(s)	464, 700
ApaLI	GTGCAC	2 cut(s)	204, 243
ApoI	RAATTY	1 cut(s)	181
AspLEI	GCGC	2 cut(s)	120, 268
AsuHPI	GGTGA	1 cut(s)	731
AvaI	CYCGRG	1 cut(s)	624
BaeGI	GKGCMC	3 cut(s)	208, 247, 698
BanI	GGYRCC	1 cut(s)	695
BarI	GAAGNNNNNNTAC	2 cut(s)	359, 391
BbsI	GAAGAC	1 cut(s)	135
Bbv12I	GWGCWC	2 cut(s)	208, 247
BbvCI	CCTCAGC	1 cut(s)	560
BccI	CCATC	4 cut(s)	330, 487, 532, 623
BciT130I	CCWGG	1 cut(s)	432
BfaI	CTAG	4 cut(s)	39, 570, 618, 657
BfoI	RGCGCY	1 cut(s)	121
BglII	AGATCT	1 cut(s)	614
Bme1390I	CCNGG	1 cut(s)	432
BmeT110I	CYCGRG	1 cut(s)	624
BmiI	GGNNCC	1 cut(s)	697
BmrFI	CCNGG	1 cut(s)	432
BmsI	GCATC	3 cut(s)	102, 277, 508
BpiI	GAAGAC	1 cut(s)	135
BplI	GAGNNNNNCTC	2 cut(s)	533, 565
BpmI	CTGGAG	1 cut(s)	269
Bpu10I	CCTNAGC	1 cut(s)	560
BpuEI	CTTGAG	1 cut(s)	625
BsaAI	YACGTR	1 cut(s)	232
BsaJI	CCNNGG	1 cut(s)	391
Bsc4I	CCNNNNNNNGG	4 cut(s)	216, 217, 354, 396
Bse118I	RCCGGY	1 cut(s)	698
Bse1I	ACTGG	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	432
BseDI	CCNNGG	1 cut(s)	391
BseGI	GGATG	3 cut(s)	31, 78, 148
BseLI	CCNNNNNNNGG	4 cut(s)	216, 217, 354, 396
BseMII	CTCAG	1 cut(s)	551
BseNI	ACTGG	1 cut(s)	252
BseSI	GKGCMC	3 cut(s)	208, 247, 698
BseYI	CCCAGC	1 cut(s)	296
BshFI	GGCC	2 cut(s)	466, 702
BshNI	GGYRCC	1 cut(s)	695
BsiHKAI	GWGCWC	2 cut(s)	208, 247
BsiHKCI	CYCGRG	1 cut(s)	624
BsiSI	CCGG	1 cut(s)	699
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	4 cut(s)	216, 217, 354, 396
BsmFI	GGGAC	1 cut(s)	32
BsmI	GAATGC	1 cut(s)	733
BsnI	GGCC	2 cut(s)	466, 702
BsoBI	CYCGRG	1 cut(s)	624
Bsp1286I	GDGCHC	3 cut(s)	208, 247, 698
Bsp143I	GATC	1 cut(s)	614
BspACI	CCGC	2 cut(s)	217, 424
BspANI	GGCC	2 cut(s)	466, 702
BspCNI	CTCAG	1 cut(s)	552
BspLI	GGNNCC	1 cut(s)	697
BspT107I	GGYRCC	1 cut(s)	695
BsrFI	RCCGGY	1 cut(s)	698
BsrI	ACTGG	1 cut(s)	252
BssAI	RCCGGY	1 cut(s)	698
BssECI	CCNNGG	1 cut(s)	391
BssMI	GATC	1 cut(s)	614
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	4 cut(s)	237, 242, 419, 707
Bst6I	CTCTTC	1 cut(s)	717
BstBAI	YACGTR	1 cut(s)	232
BstDEI	CTNAG	1 cut(s)	560
BstDSI	CCRYGG	1 cut(s)	391
BstF5I	GGATG	3 cut(s)	31, 78, 148
BstH2I	RGCGCY	1 cut(s)	121
BstHHI	GCGC	2 cut(s)	120, 268
BstKTI	GATC	1 cut(s)	617
BstMBI	GATC	1 cut(s)	614
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNI	CCWGG	1 cut(s)	432
BstNSI	RCATGY	2 cut(s)	387, 405
BstSCI	CCNGG	1 cut(s)	430
BstSLI	GKGCMC	3 cut(s)	208, 247, 698
BstSNI	TACGTA	1 cut(s)	232
BstV2I	GAAGAC	1 cut(s)	135
BstX2I	RGATCY	1 cut(s)	614
BstXI	CCANNNNNNTGG	1 cut(s)	480
BstYI	RGATCY	1 cut(s)	614
BsuRI	GGCC	2 cut(s)	466, 702
BtgI	CCRYGG	1 cut(s)	391
BtsCI	GGATG	3 cut(s)	31, 78, 148
BtsIMutI	CAGTG	3 cut(s)	245, 247, 415
CfoI	GCGC	2 cut(s)	120, 268
Cfr10I	RCCGGY	1 cut(s)	698
Csp6I	GTAC	3 cut(s)	229, 233, 238
CspCI	CAANNNNNGTGG	2 cut(s)	415, 450
CviAII	CATG	2 cut(s)	384, 402
CviJI	RGCY	8 cut(s)	42, 81, 86, 257, 452, 466, 559, 702
CviKI_1	RGCY	8 cut(s)	42, 81, 86, 257, 452, 466, 559, 702
CviQI	GTAC	3 cut(s)	229, 233, 238
DdeI	CTNAG	1 cut(s)	560
DpnI	GATC	1 cut(s)	616
DpnII	GATC	1 cut(s)	614
EaeI	YGGCCR	1 cut(s)	700
Eam1104I	CTCTTC	1 cut(s)	717
EarI	CTCTTC	1 cut(s)	717
Eco105I	TACGTA	1 cut(s)	232
Eco47III	AGCGCT	1 cut(s)	119
Eco57I	CTGAAG	1 cut(s)	699
Eco88I	CYCGRG	1 cut(s)	624
EcoRII	CCWGG	1 cut(s)	430
EcoT22I	ATGCAT	1 cut(s)	523
FaeI	CATG	2 cut(s)	387, 405
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	2 cut(s)	383, 401
FauI	CCCGC	1 cut(s)	210
FauNDI	CATATG	2 cut(s)	350, 534
FblI	GTMKAC	1 cut(s)	709
FokI	GGATG	3 cut(s)	38, 85, 155
FspBI	CTAG	4 cut(s)	39, 570, 618, 657
FspI	TGCGCA	1 cut(s)	267
GlaI	GCGC	2 cut(s)	119, 267
GsaI	CCCAGC	1 cut(s)	300
GsuI	CTGGAG	1 cut(s)	269
HaeII	RGCGCY	1 cut(s)	121
HaeIII	GGCC	2 cut(s)	466, 702
HapII	CCGG	1 cut(s)	699
HhaI	GCGC	2 cut(s)	120, 268
Hin1II	CATG	2 cut(s)	387, 405
Hin6I	GCGC	2 cut(s)	118, 266
HinP1I	GCGC	2 cut(s)	118, 266
HinfI	GANTC	4 cut(s)	56, 65, 251, 590
HpaII	CCGG	1 cut(s)	699
HphI	GGTGA	1 cut(s)	731
Hpy166II	GTNNAC	4 cut(s)	206, 229, 245, 710
Hpy188I	TCNGA	3 cut(s)	170, 517, 690
Hpy188III	TCNNGA	6 cut(s)	160, 372, 552, 624, 626, 789
Hpy8I	GTNNAC	4 cut(s)	206, 229, 245, 710
HpyAV	CCTTC	5 cut(s)	23, 334, 685, 723, 733
HpyCH4III	ACNGT	4 cut(s)	237, 242, 419, 707
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	8 cut(s)	93, 195, 206, 245, 405, 500, 521, 610
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	1 cut(s)	560
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	2 cut(s)	387, 405
HspAI	GCGC	2 cut(s)	118, 266
Kzo9I	GATC	1 cut(s)	614
LmnI	GCTCC	1 cut(s)	691
LweI	GCATC	3 cut(s)	102, 277, 508
MaeI	CTAG	4 cut(s)	39, 570, 618, 657
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	3 cut(s)	314, 328, 635
MalI	GATC	1 cut(s)	616
MboI	GATC	1 cut(s)	614
MboII	GAAGA	5 cut(s)	119, 140, 675, 734, 769
MflI	RGATCY	1 cut(s)	614
MhlI	GDGCHC	3 cut(s)	208, 247, 698
MluCI	AATT	5 cut(s)	111, 174, 181, 406, 679
MlyI	GAGTC	1 cut(s)	260
MnlI	CCTC	4 cut(s)	133, 535, 555, 591
Mph1103I	ATGCAT	1 cut(s)	523
MseI	TTAA	1 cut(s)	747
MslI	CAYNNNNRTG	1 cut(s)	326
MspA1I	CMGCKG	1 cut(s)	559
MspI	CCGG	1 cut(s)	699
MspR9I	CCNGG	1 cut(s)	432
Mva1269I	GAATGC	1 cut(s)	733
MvaI	CCWGG	1 cut(s)	432
MwoI	GCNNNNNNNGC	1 cut(s)	263
NdeI	CATATG	2 cut(s)	350, 534
NdeII	GATC	1 cut(s)	614
NlaIII	CATG	2 cut(s)	387, 405
NlaIV	GGNNCC	1 cut(s)	697
NmeAIII	GCCGAG	1 cut(s)	62
NmuCI	GTSAC	2 cut(s)	314, 328
NsbI	TGCGCA	1 cut(s)	267
NsiI	ATGCAT	1 cut(s)	523
NspI	RCATGY	2 cut(s)	387, 405
PaeR7I	CTCGAG	1 cut(s)	624
PciI	ACATGT	1 cut(s)	383
PctI	GAATGC	1 cut(s)	733
PfeI	GAWTC	3 cut(s)	56, 65, 590
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
Ppu21I	YACGTR	1 cut(s)	232
PscI	ACATGT	1 cut(s)	383
PsiI	TTATAA	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	430
PspFI	CCCAGC	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	430
PspN4I	GGNNCC	1 cut(s)	697
PsuI	RGATCY	1 cut(s)	614
PvuII	CAGCTG	1 cut(s)	559
RsaI	GTAC	3 cut(s)	230, 234, 239
RsaNI	GTAC	3 cut(s)	229, 233, 238
RseI	CAYNNNNRTG	1 cut(s)	326
SaqAI	TTAA	1 cut(s)	747
Sau3AI	GATC	1 cut(s)	614
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	1 cut(s)	432
SduI	GDGCHC	3 cut(s)	208, 247, 698
SetI	ASST	9 cut(s)	44, 192, 234, 259, 345, 561, 602, 715, 721
SfaNI	GCATC	3 cut(s)	102, 277, 508
Sfr274I	CTCGAG	1 cut(s)	624
SlaI	CTCGAG	1 cut(s)	624
SmiMI	CAYNNNNRTG	1 cut(s)	326
SmlI	CTYRAG	2 cut(s)	624, 640
SmoI	CTYRAG	2 cut(s)	624, 640
SnaBI	TACGTA	1 cut(s)	232
Sse9I	AATT	5 cut(s)	111, 174, 181, 406, 679
SsiI	CCGC	2 cut(s)	217, 424
SspI	AATATT	1 cut(s)	479
SspMI	CTAG	4 cut(s)	39, 570, 618, 657
StyD4I	CCNGG	1 cut(s)	430
TaaI	ACNGT	4 cut(s)	237, 242, 419, 707
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	2 cut(s)	371, 625
TasI	AATT	5 cut(s)	111, 174, 181, 406, 679
TatI	WGTACW	1 cut(s)	237
TfiI	GAWTC	3 cut(s)	56, 65, 590
Tru1I	TTAA	1 cut(s)	747
Tru9I	TTAA	1 cut(s)	747
TscAI	CASTG	3 cut(s)	247, 252, 422
TseFI	GTSAC	2 cut(s)	314, 328
Tsp45I	GTSAC	2 cut(s)	314, 328
TspDTI	ATGAA	6 cut(s)	42, 137, 141, 310, 459, 690
TspRI	CASTG	3 cut(s)	247, 252, 422
VneI	GTGCAC	2 cut(s)	204, 243
XapI	RAATTY	1 cut(s)	181
XceI	RCATGY	2 cut(s)	387, 405
XhoI	CTCGAG	1 cut(s)	624
XmiI	GTMKAC	1 cut(s)	709
XspI	CTAG	4 cut(s)	39, 570, 618, 657
Zsp2I	ATGCAT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.