Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Forward (+)

38709828 .. 38711516

Gene Structure 1689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g39000.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGACGCCATTCTCAACGATCGCTCTAGAGCTTGCGAAGATTACGATGATCGAGCAAGAGGAGGCCGAGCGGTCGGAAAGAGAAAGGAAGATTTTCGAGGAGCGAGAGAAGGCGTGGATGGAAGCCATGGAGGTTAAGAGGAAGAAACAAATCGAAGAAGAAGAAGAGGAAGAACGAAGAAGAATCAAGGCTCTTGAGGAAGAAGACGAATTGCGGAATGAACAGGTCGAAAATGCAAATGACGGTAATGAGGTTGATGAGTGGGACTATGAAGAAGGACCTGCTGAAATCATCTGGCAAGGAAATGAGATCATTCTCAAGAAGAAAAGGGTCAAGATTCCTAAGAAAAACACAGACCAAGAAAGTAGAAAGAAGGATTCTGATAGGCCTACATCAAATCCTCTCCCTCCACAATCTAAAGCTTTTTCTGATTATAAAAGTTCATCAATGTCAGCACAGCAGCTGATCGAGAGTGTTGCTCAACAAGTACCACATTTTGGAACTGAGCAGGATAAAGCTCATTGCCCTTTCCATTTGAAAACTGGAGCTTGTCGGTTTGGTCAGCGTTGTAGCAGAGTCCATTTCTGTCCTGATAAATCTTCCACACTGCTTATCAAGAACATGTACAATGGTCCAGGCCTTGCTTGGGAGCAGGATGAGGGGCTCGAGGTCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030628 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

226

Amino Acids

26.22

Weight (kDa)

5.05

Isoelectric Point (pI)

69.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	435
Acc36I	ACCTGC	1 cut(s)	289
AccB7I	CCANNNNNTGG	1 cut(s)	497
AccBSI	CCGCTC	1 cut(s)	70
AciI	CCGC	2 cut(s)	70, 214
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	489, 626
AfiI	CCNNNNNNNGG	2 cut(s)	497, 646
AflIII	ACRYGT	1 cut(s)	621
AgsI	TTSAA	1 cut(s)	538
AjnI	CCWGG	1 cut(s)	634
AluBI	AGCT	5 cut(s)	31, 422, 463, 518, 548
AluI	AGCT	5 cut(s)	31, 422, 463, 518, 548
AlwNI	CAGNNNCTG	1 cut(s)	463
Ama87I	CYCGRG	1 cut(s)	665
AoxI	GGCC	3 cut(s)	63, 386, 637
ApeKI	GCWGC	1 cut(s)	460
Asp700I	GAANNNNTTC	1 cut(s)	92
AspS9I	GGNCC	2 cut(s)	278, 632
AvaI	CYCGRG	1 cut(s)	665
AvaII	GGWCC	2 cut(s)	278, 632
BanII	GRGCYC	1 cut(s)	666
BbsI	GAAGAC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	472
BccI	CCATC	1 cut(s)	112
BcgI	CGANNNNNNTGC	2 cut(s)	458, 492
BciT130I	CCWGG	1 cut(s)	636
BfaI	CTAG	1 cut(s)	26
BfuAI	ACCTGC	1 cut(s)	289
BisI	GCNGC	1 cut(s)	461
BlsI	GCNGC	1 cut(s)	462
Bme1390I	CCNGG	1 cut(s)	636
Bme18I	GGWCC	2 cut(s)	278, 632
BmeT110I	CYCGRG	1 cut(s)	665
BmgT120I	GGNCC	2 cut(s)	278, 632
BmrFI	CCNGG	1 cut(s)	636
BpiI	GAAGAC	1 cut(s)	210
BplI	GAGNNNNNCTC	2 cut(s)	463, 495
BpmI	CTGGAG	1 cut(s)	564
BpuEI	CTTGAG	2 cut(s)	215, 302
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	2 cut(s)	497, 646
Bse1I	ACTGG	1 cut(s)	547
Bse3DI	GCAATG	1 cut(s)	520
BseBI	CCWGG	1 cut(s)	636
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	2 cut(s)	123, 661
BseLI	CCNNNNNNNGG	2 cut(s)	497, 646
BseMI	GCAATG	1 cut(s)	520
BseMII	CTCAG	1 cut(s)	495
BseNI	ACTGG	1 cut(s)	547
BseRI	GAGGAG	2 cut(s)	74, 113
BseXI	GCAGC	1 cut(s)	472
Bsh1285I	CGRYCG	2 cut(s)	21, 74
BshFI	GGCC	3 cut(s)	65, 388, 639
BsiEI	CGRYCG	2 cut(s)	21, 74
BsiHKCI	CYCGRG	1 cut(s)	665
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	2 cut(s)	497, 646
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	3 cut(s)	65, 388, 639
BsoBI	CYCGRG	1 cut(s)	665
Bsp1286I	GDGCHC	1 cut(s)	666
Bsp1407I	TGTACA	1 cut(s)	624
Bsp143I	GATC	4 cut(s)	18, 48, 309, 465
Bsp19I	CCATGG	1 cut(s)	126
BspACI	CCGC	2 cut(s)	70, 214
BspANI	GGCC	3 cut(s)	65, 388, 639
BspCNI	CTCAG	1 cut(s)	496
BspMI	ACCTGC	1 cut(s)	289
BsrBI	CCGCTC	1 cut(s)	70
BsrDI	GCAATG	1 cut(s)	520
BsrGI	TGTACA	1 cut(s)	624
BsrI	ACTGG	1 cut(s)	547
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	4 cut(s)	18, 48, 309, 465
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	636
Bst4CI	ACNGT	1 cut(s)	245
Bst6I	CTCTTC	1 cut(s)	159
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	1 cut(s)	624
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	2 cut(s)	342, 504
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	2 cut(s)	123, 661
BstKTI	GATC	4 cut(s)	21, 51, 312, 468
BstMBI	GATC	4 cut(s)	18, 48, 309, 465
BstMCI	CGRYCG	2 cut(s)	21, 74
BstNI	CCWGG	1 cut(s)	636
BstNSI	RCATGY	1 cut(s)	625
BstSCI	CCNGG	1 cut(s)	634
BstV1I	GCAGC	1 cut(s)	472
BstV2I	GAAGAC	1 cut(s)	210
BsuRI	GGCC	3 cut(s)	65, 388, 639
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	2 cut(s)	123, 661
BtsI	GCAGTG	1 cut(s)	605
BtsIMutI	CAGTG	1 cut(s)	605
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	33
CaiI	CAGNNNCTG	1 cut(s)	463
Cfr13I	GGNCC	2 cut(s)	278, 632
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	2 cut(s)	488, 625
CviAII	CATG	2 cut(s)	127, 622
CviQI	GTAC	2 cut(s)	488, 625
DdeI	CTNAG	2 cut(s)	342, 504
DpnI	GATC	4 cut(s)	20, 50, 311, 467
DpnII	GATC	4 cut(s)	18, 48, 309, 465
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	126
Eco147I	AGGCCT	2 cut(s)	388, 639
Eco24I	GRGCYC	1 cut(s)	666
Eco47I	GGWCC	2 cut(s)	278, 632
Eco88I	CYCGRG	1 cut(s)	665
EcoO109I	RGGNCCY	1 cut(s)	278
EcoRII	CCWGG	1 cut(s)	634
EcoT14I	CCWWGG	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	666
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	2 cut(s)	130, 625
FaiI	YATR	4 cut(s)	128, 270, 435, 623
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	2 cut(s)	126, 621
Fnu4HI	GCNGC	1 cut(s)	461
FokI	GGATG	2 cut(s)	130, 668
FriOI	GRGCYC	1 cut(s)	666
Fsp4HI	GCNGC	1 cut(s)	461
FspBI	CTAG	1 cut(s)	26
GluI	GCNGC	1 cut(s)	461
GsuI	CTGGAG	1 cut(s)	564
HaeIII	GGCC	3 cut(s)	65, 388, 639
HgaI	GACGC	1 cut(s)	13
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	130, 625
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	4 cut(s)	183, 337, 377, 576
Hpy188I	TCNGA	3 cut(s)	76, 382, 430
Hpy188III	TCNNGA	7 cut(s)	26, 194, 319, 334, 469, 590, 616
HpyAV	CCTTC	3 cut(s)	103, 269, 367
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4V	TGCA	1 cut(s)	236
HpyF3I	CTNAG	2 cut(s)	342, 504
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	130, 625
Kzo9I	GATC	4 cut(s)	18, 48, 309, 465
LmnI	GCTCC	3 cut(s)	100, 545, 649
LpnPI	CCDG	9 cut(s)	209, 280, 294, 494, 528, 603, 621, 638, 648
Lsp1109I	GCAGC	1 cut(s)	472
MaeI	CTAG	1 cut(s)	26
MalI	GATC	4 cut(s)	20, 50, 311, 467
MbiI	CCGCTC	1 cut(s)	70
MboI	GATC	4 cut(s)	18, 48, 309, 465
MhlI	GDGCHC	1 cut(s)	666
MluCI	AATT	1 cut(s)	209
MlyI	GAGTC	1 cut(s)	585
MmeI	TCCRAC	1 cut(s)	54
MroXI	GAANNNNTTC	1 cut(s)	92
MseI	TTAA	2 cut(s)	135, 676
MspA1I	CMGCKG	1 cut(s)	463
MspR9I	CCNGG	1 cut(s)	636
MvaI	CCWGG	1 cut(s)	636
NcoI	CCATGG	1 cut(s)	126
NdeII	GATC	4 cut(s)	18, 48, 309, 465
NlaIII	CATG	2 cut(s)	130, 625
NmeAIII	GCCGAG	1 cut(s)	91
NspI	RCATGY	1 cut(s)	625
PaeR7I	CTCGAG	1 cut(s)	665
PceI	AGGCCT	2 cut(s)	388, 639
PciI	ACATGT	1 cut(s)	621
PdmI	GAANNNNTTC	1 cut(s)	92
PfeI	GAWTC	3 cut(s)	183, 337, 377
PflMI	CCANNNNNTGG	1 cut(s)	497
PkrI	GCNGC	1 cut(s)	462
Ple19I	CGATCG	1 cut(s)	21
PleI	GAGTC	1 cut(s)	584
PpsI	GAGTC	1 cut(s)	584
PpuMI	RGGWCCY	1 cut(s)	278
PscI	ACATGT	1 cut(s)	621
PsiI	TTATAA	1 cut(s)	435
Psp5II	RGGWCCY	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	634
PspGI	CCWGG	1 cut(s)	634
PspPI	GGNCC	2 cut(s)	278, 632
PspPPI	RGGWCCY	1 cut(s)	278
PspXI	VCTCGAGB	1 cut(s)	665
PstNI	CAGNNNCTG	1 cut(s)	463
PvuI	CGATCG	1 cut(s)	21
PvuII	CAGCTG	1 cut(s)	463
RsaI	GTAC	2 cut(s)	489, 626
RsaNI	GTAC	2 cut(s)	488, 625
SaqAI	TTAA	2 cut(s)	135, 676
SatI	GCNGC	1 cut(s)	461
Sau3AI	GATC	4 cut(s)	18, 48, 309, 465
Sau96I	GGNCC	2 cut(s)	278, 632
SchI	GAGTC	1 cut(s)	585
ScrFI	CCNGG	1 cut(s)	636
SduI	GDGCHC	1 cut(s)	666
Sfr274I	CTCGAG	1 cut(s)	665
SinI	GGWCC	2 cut(s)	278, 632
SlaI	CTCGAG	1 cut(s)	665
SmlI	CTYRAG	3 cut(s)	194, 317, 665
SmoI	CTYRAG	3 cut(s)	194, 317, 665
Sse9I	AATT	1 cut(s)	209
SseBI	AGGCCT	2 cut(s)	388, 639
SsiI	CCGC	2 cut(s)	70, 214
SspMI	CTAG	1 cut(s)	26
StuI	AGGCCT	2 cut(s)	388, 639
StyD4I	CCNGG	1 cut(s)	634
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	245
TaqI	TCGA	6 cut(s)	51, 96, 153, 228, 468, 666
TasI	AATT	1 cut(s)	209
TatI	WGTACW	1 cut(s)	624
TfiI	GAWTC	3 cut(s)	183, 337, 377
Tru1I	TTAA	2 cut(s)	135, 676
Tru9I	TTAA	2 cut(s)	135, 676
TscAI	CASTG	1 cut(s)	612
TseI	GCWGC	1 cut(s)	460
TspDTI	ATGAA	3 cut(s)	234, 285, 432
TspRI	CASTG	1 cut(s)	612
Van91I	CCANNNNNTGG	1 cut(s)	497
VpaK11BI	GGWCC	2 cut(s)	278, 632
XbaI	TCTAGA	1 cut(s)	25
XceI	RCATGY	1 cut(s)	625
XcmI	CCANNNNNNNNNTGG	2 cut(s)	539, 642
XhoI	CTCGAG	1 cut(s)	665
XmnI	GAANNNNTTC	1 cut(s)	92
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.