Rroxscaffold_7G00212980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000557
Physical Location & Seq
Forward (+)
63511920 .. 63513348
1429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00212980.1

Sequence Viewer

Length: 465 bp
ATGAGAGGAATGCGGAATCGTCTTGGTGAGTCGGTTCGGTACAACCGTACCGAGTTTTCGGCTACCAATTCATTTGGCTCGGCTCGGATGCGGTTGGTACGGTTTGATTCGGGAGAATTTGCCAGCCCTAAAGGTGACTGTAGCGATGTAGTTAGAGCTCTAACGTGTGGTCAAGATGGACCGAGTGACTTGAGGTTGATTGTTTTATTGAGTGTTTGTAGGACCCAATTGGGGTGTCGTGATTTGAGGATTGAGATATTGTATTTCTTCGTGAATCCCGTTAATAAGAATCTCGAGAACGCCATAGAATTACTCCTGCAGAAGAGGAAGATGTTGCAGAGGAAGTGGAAGACGGCGAGGAAGATGAAGAAGATGAAGAAGAGGAAGAAGCTGAAGAAACTTACAATGCCGGTGAAGAGAGTGAAGCCGAAGACAAAGGAAGCATCCCACCAATACCTCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.94

Weight (kDa)

10.58

Isoelectric Point (pI)

45.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000557)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10320 AT1G10320
fragaria_vesca FvH4_1g01270 FvH4_5g28020
malus_domestica MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica Prupe.1G585000_v2.0.a1
pyrus_communis pycom05g24740 pycom15g39000
rosa_chinensis RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 13, 91
AcsI RAATTY 1 cut(s) 116
AcuI CTGAAG 1 cut(s) 413
AfaI GTAC 3 cut(s) 41, 49, 99
AfiI CCNNNNNNNGG 1 cut(s) 231
AflIII ACRYGT 1 cut(s) 164
AluBI AGCT 2 cut(s) 158, 391
AluI AGCT 2 cut(s) 158, 391
Alw21I GWGCWC 1 cut(s) 160
Ama87I CYCGRG 1 cut(s) 293
ApoI RAATTY 1 cut(s) 116
AspS9I GGNCC 2 cut(s) 179, 222
AsuHPI GGTGA 3 cut(s) 38, 146, 424
AvaI CYCGRG 1 cut(s) 293
AvaII GGWCC 2 cut(s) 179, 222
BaeI ACNNNNGTAYC 4 cut(s) 31, 31, 64, 64
BanII GRGCYC 1 cut(s) 160
BbsI GAAGAC 2 cut(s) 356, 437
Bbv12I GWGCWC 1 cut(s) 160
BccI CCATC 1 cut(s) 170
BceAI ACGGC 1 cut(s) 369
BfmI CTRYAG 2 cut(s) 139, 317
Bme18I GGWCC 2 cut(s) 179, 222
BmeT110I CYCGRG 1 cut(s) 293
BmgT120I GGNCC 2 cut(s) 179, 222
BmiI GGNNCC 1 cut(s) 224
BmsI GCATC 2 cut(s) 78, 452
BpiI GAAGAC 2 cut(s) 356, 437
BpuEI CTTGAG 1 cut(s) 211
Bsc4I CCNNNNNNNGG 1 cut(s) 231
Bse118I RCCGGY 1 cut(s) 409
BseGI GGATG 2 cut(s) 93, 443
BseLI CCNNNNNNNGG 1 cut(s) 231
BsiHKAI GWGCWC 1 cut(s) 160
BsiHKCI CYCGRG 1 cut(s) 293
BsiSI CCGG 1 cut(s) 410
BslI CCNNNNNNNGG 1 cut(s) 231
BsmI GAATGC 1 cut(s) 15
BsoBI CYCGRG 1 cut(s) 293
Bsp1286I GDGCHC 1 cut(s) 160
BspACI CCGC 2 cut(s) 13, 91
BspLI GGNNCC 1 cut(s) 224
BspMAI CTGCAG 1 cut(s) 321
BsrFI RCCGGY 1 cut(s) 409
BssAI RCCGGY 1 cut(s) 409
Bst4CI ACNGT 3 cut(s) 47, 102, 140
Bst6I CTCTTC 3 cut(s) 317, 374, 410
BstC8I GCNNGC 1 cut(s) 124
BstF5I GGATG 2 cut(s) 93, 443
BstSFI CTRYAG 2 cut(s) 139, 317
BstV2I GAAGAC 2 cut(s) 356, 437
BtgZI GCGATG 1 cut(s) 159
BtsCI GGATG 2 cut(s) 93, 443
Cac8I GCNNGC 1 cut(s) 124
Cfr10I RCCGGY 1 cut(s) 409
Cfr13I GGNCC 2 cut(s) 179, 222
Csp6I GTAC 3 cut(s) 40, 48, 98
CviJI RGCY 7 cut(s) 62, 78, 83, 126, 158, 391, 427
CviKI_1 RGCY 7 cut(s) 62, 78, 83, 126, 158, 391, 427
CviQI GTAC 3 cut(s) 40, 48, 98
Eam1104I CTCTTC 3 cut(s) 317, 374, 410
EarI CTCTTC 3 cut(s) 317, 374, 410
Ecl136II GAGCTC 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 160
Eco47I GGWCC 2 cut(s) 179, 222
Eco53kI GAGCTC 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 413
Eco88I CYCGRG 1 cut(s) 293
EcoICRI GAGCTC 1 cut(s) 158
EcoO109I RGGNCCY 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 160
FaiI YATR 1 cut(s) 305
FokI GGATG 2 cut(s) 100, 430
FriOI GRGCYC 1 cut(s) 160
HapII CCGG 1 cut(s) 410
HinfI GANTC 5 cut(s) 16, 29, 107, 274, 289
HpaII CCGG 1 cut(s) 410
HphI GGTGA 3 cut(s) 38, 146, 424
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 6 cut(s) 111, 173, 239, 271, 293, 295
HpyCH4III ACNGT 3 cut(s) 47, 102, 140
HpyCH4IV ACGT 1 cut(s) 164
HpyCH4V TGCA 2 cut(s) 319, 337
HpySE526I ACGT 1 cut(s) 164
LpnPI CCDG 3 cut(s) 136, 329, 423
LweI GCATC 2 cut(s) 78, 452
MaeII ACGT 1 cut(s) 164
MaeIII GTNAC 2 cut(s) 134, 185
MfeI CAATTG 1 cut(s) 227
MhlI GDGCHC 1 cut(s) 160
MluCI AATT 4 cut(s) 67, 116, 227, 308
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 6 cut(s) 186, 240, 318, 333, 351, 375
MseI TTAA 1 cut(s) 282
MspI CCGG 1 cut(s) 410
MunI CAATTG 1 cut(s) 227
Mva1269I GAATGC 1 cut(s) 15
NlaIV GGNNCC 1 cut(s) 224
NmeAIII GCCGAG 1 cut(s) 59
NmuCI GTSAC 2 cut(s) 134, 185
PaeR7I CTCGAG 1 cut(s) 293
PcsI WCGNNNNNNNCGW 2 cut(s) 43, 276
PctI GAATGC 1 cut(s) 15
PfeI GAWTC 4 cut(s) 16, 107, 274, 289
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
PpuMI RGGWCCY 1 cut(s) 222
Psp124BI GAGCTC 1 cut(s) 160
Psp5II RGGWCCY 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 224
PspPI GGNCC 2 cut(s) 179, 222
PspPPI RGGWCCY 1 cut(s) 222
PstI CTGCAG 1 cut(s) 321
RsaI GTAC 3 cut(s) 41, 49, 99
RsaNI GTAC 3 cut(s) 40, 48, 98
SacI GAGCTC 1 cut(s) 160
SaqAI TTAA 1 cut(s) 282
Sau96I GGNCC 2 cut(s) 179, 222
SchI GAGTC 1 cut(s) 38
SduI GDGCHC 1 cut(s) 160
SetI ASST 6 cut(s) 136, 160, 167, 197, 393, 459
SfaNI GCATC 2 cut(s) 78, 452
SfcI CTRYAG 2 cut(s) 139, 317
Sfr274I CTCGAG 1 cut(s) 293
SinI GGWCC 2 cut(s) 179, 222
SlaI CTCGAG 1 cut(s) 293
SmlI CTYRAG 2 cut(s) 190, 293
SmoI CTYRAG 2 cut(s) 190, 293
Sse9I AATT 4 cut(s) 67, 116, 227, 308
SsiI CCGC 2 cut(s) 13, 91
SstI GAGCTC 1 cut(s) 160
TaaI ACNGT 3 cut(s) 47, 102, 140
TaiI ACGT 1 cut(s) 167
TaqI TCGA 2 cut(s) 294, 459
TaqII GACCGA 1 cut(s) 196
TasI AATT 4 cut(s) 67, 116, 227, 308
TfiI GAWTC 4 cut(s) 16, 107, 274, 289
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TseFI GTSAC 2 cut(s) 134, 185
Tsp45I GTSAC 2 cut(s) 134, 185
TspDTI ATGAA 3 cut(s) 60, 380, 389
VpaK11BI GGWCC 2 cut(s) 179, 222
XapI RAATTY 1 cut(s) 116
XhoI CTCGAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.