Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Reverse (-)

80631659 .. 80633178

Gene Structure 1520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG508200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGATCACAGCATCGCCCAATCTAGAGGTTCACGAGCTGGATGAGCTCCTGGAGCAGTGGCGGAGGTTCAAGCTGGCTTGGCTTTGTAAGGAGCTGCCGTTGCATAATTCCGGGGCTTTGATTCGGATTCTCAATGCCCAGAAGAAGTGGATGAGGCAAGAGGATGCCAAGAACTCTGACTCCACAGAGGAGACATCACGCCTTCCTTGGTCTGGTTTGAAGTCAACTATGGCCTTCTTCTGCTCTTCAGGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015979 GO:0016043 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019684 GO:0022607 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045292 GO:0046483 GO:0048564 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LAGLIDADG_2 PPR

Protein Analysis

85

Amino Acids

9.88

Weight (kDa)

7.82

Isoelectric Point (pI)

53.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	61
AcuI	CTGAAG	1 cut(s)	231
AfiI	CCNNNNNNNGG	1 cut(s)	212
AgsI	TTSAA	2 cut(s)	70, 220
AjnI	CCWGG	1 cut(s)	48
AloI	GAACNNNNNNTCC	2 cut(s)	164, 196
AluBI	AGCT	4 cut(s)	37, 46, 73, 94
AluI	AGCT	4 cut(s)	37, 46, 73, 94
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	185
AoxI	GGCC	1 cut(s)	231
ApeKI	GCWGC	1 cut(s)	94
AsuC2I	CCSGG	1 cut(s)	112
BanII	GRGCYC	1 cut(s)	48
BauI	CACGAG	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	81
BceAI	ACGGC	1 cut(s)	82
BciT130I	CCWGG	1 cut(s)	50
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	1 cut(s)	23
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
Bme1390I	CCNGG	2 cut(s)	50, 112
BmrFI	CCNGG	2 cut(s)	50, 112
BmsI	GCATC	2 cut(s)	20, 154
BpmI	CTGGAG	1 cut(s)	71
BpuMI	CCSGG	1 cut(s)	112
BsaJI	CCNNGG	2 cut(s)	111, 206
BsaXI	ACNNNNNCTCC	4 cut(s)	83, 113, 164, 194
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	111, 206
BseGI	GGATG	3 cut(s)	46, 156, 169
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseRI	GAGGAG	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	81
BshFI	GGCC	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmAI	GTCTC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	1 cut(s)	233
BspQI	GCTCTTC	1 cut(s)	250
BssECI	CCNNGG	2 cut(s)	111, 206
BssMI	GATC	1 cut(s)	3
BssSI	CACGAG	1 cut(s)	32
BssT1I	CCWWGG	1 cut(s)	206
Bst2BI	CACGAG	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	50
Bst6I	CTCTTC	1 cut(s)	250
BstC8I	GCNNGC	1 cut(s)	75
BstF5I	GGATG	3 cut(s)	46, 156, 169
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 52, 79, 100
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	2 cut(s)	48, 110
BstV1I	GCAGC	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	233
BtsCI	GGATG	3 cut(s)	46, 156, 169
BtsI	GCAGTG	1 cut(s)	62
BtsIMutI	CAGTG	1 cut(s)	62
Cac8I	GCNNGC	1 cut(s)	75
CviJI	RGCY	8 cut(s)	37, 46, 73, 77, 82, 94, 116, 233
CviKI_1	RGCY	8 cut(s)	37, 46, 73, 77, 82, 94, 116, 233
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
EciI	GGCGGA	1 cut(s)	76
Ecl136II	GAGCTC	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	206
Eco24I	GRGCYC	1 cut(s)	48
Eco53kI	GAGCTC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	231
EcoICRI	GAGCTC	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	206
EcoT38I	GRGCYC	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	206
FaiI	YATR	2 cut(s)	105, 230
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	95
FokI	GGATG	3 cut(s)	53, 163, 176
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	1 cut(s)	95
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	1 cut(s)	95
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	233
HapII	CCGG	1 cut(s)	111
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HinfI	GANTC	3 cut(s)	121, 127, 179
HpaII	CCGG	1 cut(s)	111
Hpy166II	GTNNAC	2 cut(s)	31, 225
Hpy188I	TCNGA	2 cut(s)	126, 178
Hpy188III	TCNNGA	3 cut(s)	23, 32, 249
Hpy8I	GTNNAC	2 cut(s)	31, 225
HpyAV	CCTTC	2 cut(s)	212, 244
HpyCH4V	TGCA	1 cut(s)	103
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 52, 79, 100
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LguI	GCTCTTC	1 cut(s)	250
LmnI	GCTCC	3 cut(s)	51, 52, 91
LpnPI	CCDG	8 cut(s)	23, 35, 59, 62, 124, 152, 198, 234
Lsp1109I	GCAGC	1 cut(s)	81
LweI	GCATC	2 cut(s)	20, 154
MaeI	CTAG	1 cut(s)	23
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	3 cut(s)	154, 229, 237
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	1 cut(s)	106
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	5 cut(s)	19, 57, 147, 154, 181
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	2 cut(s)	50, 112
MvaI	CCWGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	4 cut(s)	43, 52, 79, 100
NciI	CCSGG	1 cut(s)	112
NdeII	GATC	1 cut(s)	3
PciSI	GCTCTTC	1 cut(s)	250
PfeI	GAWTC	2 cut(s)	121, 127
PfoI	TCCNGGA	1 cut(s)	48
PkrI	GCNGC	1 cut(s)	96
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
Psp124BI	GAGCTC	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
SacI	GAGCTC	1 cut(s)	48
SapI	GCTCTTC	1 cut(s)	250
SatI	GCNGC	1 cut(s)	95
Sau3AI	GATC	1 cut(s)	3
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	2 cut(s)	50, 112
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	6 cut(s)	30, 39, 48, 68, 75, 96
SfaNI	GCATC	2 cut(s)	20, 154
Sse9I	AATT	1 cut(s)	106
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	1 cut(s)	23
SstI	GAGCTC	1 cut(s)	48
StyD4I	CCNGG	2 cut(s)	48, 110
StyI	CCWWGG	1 cut(s)	206
TasI	AATT	1 cut(s)	106
TfiI	GAWTC	2 cut(s)	121, 127
TscAI	CASTG	1 cut(s)	62
TseI	GCWGC	1 cut(s)	94
TspRI	CASTG	1 cut(s)	62
XbaI	TCTAGA	1 cut(s)	22
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.