Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026927.1

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Forward (+)

3665 .. 4905

Gene Structure 1241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026927.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

atggttgcattatttggttattctgatgcatacgagaaacagatgatgaaggataaatctggacagctgaggaactctagcaagaagtcaatgacggattcacagaggtttgttgtgcaaagatctagttctagagatgggagttgctcaagttttactggttctagtagaagatacgacaatgaaaattatgttccgaagggcaccggccaccatagaccttcaggtgaagagaacgcttacttgaaggacttcaatcacaggaagaacaagaagtattgtattgaatctgatggagaattgttgcatatggatggagatacggatagagatatataccatggtcacagaaggaaaagcgcaagacaagaaaacagggaccacaagaacaaaacatatgaaactgatgccgatgggcatttattggagaggggacagaacagggtaactgatcatggtagcaccaggaaaagctcaagccaacgacgaaaagtaggagtgcatcatgattacggagaagttcaggacacgaggaaagcgggatatgcagataatcacaaggaccgtaagagtaatgctcatgattcagatggagagtggtcagacagcaacaggaacggtgatgagccccatacaataaggaaaagcttggtgcatattggcaatgcttctaatagcttaaagcaacaggaaagttccgccaggtcttgtactgctgaaatgagtgaagaaatgttggacaaagatgcagaaaaagactctagtcatgctagcaaacgatcaaagcactgggataaagtggcagataaatcagatggtgatcgagccctggcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030628 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

278

Amino Acids

31.64

Weight (kDa)

8.76

Isoelectric Point (pI)

48.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	203
AciI	CCGC	2 cut(s)	539, 699
AcoI	YGGCCR	1 cut(s)	208
AcuI	CTGAAG	1 cut(s)	207
AfaI	GTAC	1 cut(s)	712
AgsI	TTSAA	3 cut(s)	247, 256, 287
AjnI	CCWGG	3 cut(s)	464, 701, 828
AluBI	AGCT	4 cut(s)	67, 474, 648, 678
AluI	AGCT	4 cut(s)	67, 474, 648, 678
AoxI	GGCC	1 cut(s)	208
Asp700I	GAANNNNTTC	1 cut(s)	251
AspLEI	GCGC	1 cut(s)	362
AspS9I	GGNCC	2 cut(s)	379, 562
AsuHPI	GGTGA	3 cut(s)	239, 632, 830
AsuNHI	GCTAGC	1 cut(s)	770
AvaII	GGWCC	2 cut(s)	379, 562
BaeGI	GKGCMC	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	203
BanII	GRGCYC	2 cut(s)	630, 829
BauI	CACGAG	1 cut(s)	529
BbvCI	CCTCAGC	1 cut(s)	68
BccI	CCATC	6 cut(s)	131, 287, 308, 407, 584, 809
BciT130I	CCWGG	3 cut(s)	466, 703, 830
BclI	TGATCA	1 cut(s)	451
BfaI	CTAG	6 cut(s)	78, 126, 132, 165, 762, 771
BglII	AGATCT	1 cut(s)	122
Bme1390I	CCNGG	3 cut(s)	466, 703, 830
Bme18I	GGWCC	2 cut(s)	379, 562
BmgT120I	GGNCC	2 cut(s)	379, 562
BmiI	GGNNCC	2 cut(s)	205, 380
BmrFI	CCNGG	3 cut(s)	466, 703, 830
BmrI	ACTGGG	1 cut(s)	799
BmsI	GCATC	4 cut(s)	16, 397, 511, 736
BmtI	GCTAGC	1 cut(s)	774
BmuI	ACTGGG	1 cut(s)	799
BoxI	GACNNNNGTC	1 cut(s)	762
BplI	GAGNNNNNCTC	2 cut(s)	562, 594
Bpu10I	CCTNAGC	1 cut(s)	68
BpuEI	CTTGAG	2 cut(s)	133, 460
BsaBI	GATNNNNATC	1 cut(s)	819
BsaJI	CCNNGG	2 cut(s)	340, 828
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	2 cut(s)	163, 794
Bse3DI	GCAATG	1 cut(s)	670
Bse8I	GATNNNNATC	1 cut(s)	819
BseBI	CCWGG	3 cut(s)	466, 703, 830
BseDI	CCNNGG	2 cut(s)	340, 828
BseGI	GGATG	1 cut(s)	319
BseJI	GATNNNNATC	1 cut(s)	819
BseMI	GCAATG	1 cut(s)	670
BseMII	CTCAG	1 cut(s)	59
BseNI	ACTGG	2 cut(s)	163, 794
BseSI	GKGCMC	1 cut(s)	206
BshFI	GGCC	1 cut(s)	210
BshNI	GGYRCC	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	207
BslFI	GGGAC	2 cut(s)	392, 447
BsmFI	GGGAC	2 cut(s)	392, 447
BsnI	GGCC	1 cut(s)	210
Bsp1286I	GDGCHC	3 cut(s)	206, 630, 829
Bsp143I	GATC	4 cut(s)	122, 451, 779, 820
Bsp19I	CCATGG	1 cut(s)	340
BspACI	CCGC	2 cut(s)	539, 699
BspANI	GGCC	1 cut(s)	210
BspCNI	CTCAG	1 cut(s)	60
BspHI	TCATGA	2 cut(s)	505, 580
BspLI	GGNNCC	2 cut(s)	205, 380
BspOI	GCTAGC	1 cut(s)	774
BspT107I	GGYRCC	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	670
BsrFI	RCCGGY	1 cut(s)	206
BsrI	ACTGG	2 cut(s)	163, 794
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	2 cut(s)	340, 828
BssMI	GATC	4 cut(s)	122, 451, 779, 820
BssSI	CACGAG	1 cut(s)	529
BssT1I	CCWWGG	1 cut(s)	340
Bst2BI	CACGAG	1 cut(s)	529
Bst2UI	CCWGG	3 cut(s)	466, 703, 830
Bst4CI	ACNGT	2 cut(s)	566, 620
Bst6I	CTCTTC	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	772
BstDEI	CTNAG	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	340
BstF5I	GGATG	1 cut(s)	319
BstHHI	GCGC	1 cut(s)	362
BstKTI	GATC	4 cut(s)	125, 454, 782, 823
BstMBI	GATC	4 cut(s)	122, 451, 779, 820
BstMWI	GCNNNNNNNGC	1 cut(s)	545
BstNI	CCWGG	3 cut(s)	466, 703, 830
BstPAI	GACNNNNGTC	1 cut(s)	762
BstSCI	CCNGG	3 cut(s)	464, 701, 828
BstSLI	GKGCMC	1 cut(s)	206
BstX2I	RGATCY	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	122
BsuRI	GGCC	1 cut(s)	210
BtgI	CCRYGG	1 cut(s)	340
BtsCI	GGATG	1 cut(s)	319
BtsIMutI	CAGTG	1 cut(s)	787
Cac8I	GCNNGC	1 cut(s)	772
CciI	TCATGA	2 cut(s)	505, 580
CfoI	GCGC	1 cut(s)	362
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	2 cut(s)	379, 562
Csp6I	GTAC	1 cut(s)	711
CviAII	CATG	5 cut(s)	341, 455, 506, 581, 767
CviJI	RGCY	8 cut(s)	67, 210, 474, 480, 628, 648, 678, 827
CviKI_1	RGCY	8 cut(s)	67, 210, 474, 480, 628, 648, 678, 827
CviQI	GTAC	1 cut(s)	711
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	4 cut(s)	124, 453, 781, 822
DpnII	GATC	4 cut(s)	122, 451, 779, 820
EaeI	YGGCCR	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
EciI	GGCGGA	1 cut(s)	688
Eco130I	CCWWGG	1 cut(s)	340
Eco24I	GRGCYC	2 cut(s)	630, 829
Eco47I	GGWCC	2 cut(s)	379, 562
Eco57I	CTGAAG	1 cut(s)	207
EcoRII	CCWGG	3 cut(s)	464, 701, 828
EcoT14I	CCWWGG	1 cut(s)	340
EcoT22I	ATGCAT	1 cut(s)	31
EcoT38I	GRGCYC	2 cut(s)	630, 829
ErhI	CCWWGG	1 cut(s)	340
FaeI	CATG	5 cut(s)	344, 458, 509, 584, 770
FaqI	GGGAC	2 cut(s)	392, 447
FatI	CATG	5 cut(s)	340, 454, 505, 580, 766
FauI	CCCGC	1 cut(s)	532
FauNDI	CATATG	2 cut(s)	309, 397
FbaI	TGATCA	1 cut(s)	451
FokI	GGATG	1 cut(s)	326
FriOI	GRGCYC	2 cut(s)	630, 829
FspBI	CTAG	6 cut(s)	78, 126, 132, 165, 762, 771
GlaI	GCGC	1 cut(s)	361
HaeIII	GGCC	1 cut(s)	210
HapII	CCGG	1 cut(s)	207
HhaI	GCGC	1 cut(s)	362
Hin1II	CATG	5 cut(s)	344, 458, 509, 584, 770
Hin6I	GCGC	1 cut(s)	360
HinP1I	GCGC	1 cut(s)	360
HindIII	AAGCTT	1 cut(s)	646
HinfI	GANTC	4 cut(s)	98, 287, 584, 758
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	3 cut(s)	239, 632, 830
Hpy188I	TCNGA	6 cut(s)	25, 198, 292, 589, 604, 814
Hpy188III	TCNNGA	5 cut(s)	60, 132, 506, 524, 581
Hpy99I	CGWCG	1 cut(s)	489
HpyAV	CCTTC	5 cut(s)	43, 193, 231, 241, 345
HpyCH4III	ACNGT	2 cut(s)	566, 620
HpyCH4V	TGCA	8 cut(s)	8, 29, 118, 307, 502, 548, 655, 749
HpyF10VI	GCNNNNNNNGC	1 cut(s)	545
HpyF3I	CTNAG	1 cut(s)	68
Hsp92II	CATG	5 cut(s)	344, 458, 509, 584, 770
HspAI	GCGC	1 cut(s)	360
Ksp22I	TGATCA	1 cut(s)	451
Kzo9I	GATC	4 cut(s)	122, 451, 779, 820
LweI	GCATC	4 cut(s)	16, 397, 511, 736
MaeI	CTAG	6 cut(s)	78, 126, 132, 165, 762, 771
MaeIII	GTNAC	2 cut(s)	344, 445
MalI	GATC	4 cut(s)	124, 453, 781, 822
MboI	GATC	4 cut(s)	122, 451, 779, 820
MboII	GAAGA	4 cut(s)	183, 242, 277, 740
MflI	RGATCY	1 cut(s)	122
MhlI	GDGCHC	3 cut(s)	206, 630, 829
MluCI	AATT	2 cut(s)	187, 299
MlyI	GAGTC	1 cut(s)	752
MmeI	TCCRAC	1 cut(s)	717
MnlI	CCTC	4 cut(s)	63, 99, 423, 525
Mph1103I	ATGCAT	1 cut(s)	31
MroXI	GAANNNNTTC	1 cut(s)	251
MseI	TTAA	1 cut(s)	680
MslI	CAYNNNNRTG	1 cut(s)	312
MspA1I	CMGCKG	1 cut(s)	67
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	3 cut(s)	466, 703, 830
MvaI	CCWGG	3 cut(s)	466, 703, 830
MwoI	GCNNNNNNNGC	1 cut(s)	545
NcoI	CCATGG	1 cut(s)	340
NdeI	CATATG	2 cut(s)	309, 397
NdeII	GATC	4 cut(s)	122, 451, 779, 820
NheI	GCTAGC	1 cut(s)	770
NlaIII	CATG	5 cut(s)	344, 458, 509, 584, 770
NlaIV	GGNNCC	2 cut(s)	205, 380
NmuCI	GTSAC	1 cut(s)	344
NsiI	ATGCAT	1 cut(s)	31
PagI	TCATGA	2 cut(s)	505, 580
PdmI	GAANNNNTTC	1 cut(s)	251
PfeI	GAWTC	3 cut(s)	98, 287, 584
PleI	GAGTC	1 cut(s)	752
PpsI	GAGTC	1 cut(s)	752
PshAI	GACNNNNGTC	1 cut(s)	762
Psp6I	CCWGG	3 cut(s)	464, 701, 828
PspGI	CCWGG	3 cut(s)	464, 701, 828
PspN4I	GGNNCC	2 cut(s)	205, 380
PspPI	GGNCC	2 cut(s)	379, 562
PsuI	RGATCY	1 cut(s)	122
PvuII	CAGCTG	1 cut(s)	67
RsaI	GTAC	1 cut(s)	712
RsaNI	GTAC	1 cut(s)	711
RseI	CAYNNNNRTG	1 cut(s)	312
SaqAI	TTAA	1 cut(s)	680
Sau3AI	GATC	4 cut(s)	122, 451, 779, 820
Sau96I	GGNCC	2 cut(s)	379, 562
SchI	GAGTC	1 cut(s)	752
ScrFI	CCNGG	3 cut(s)	466, 703, 830
SduI	GDGCHC	3 cut(s)	206, 630, 829
SetI	ASST	8 cut(s)	69, 110, 223, 229, 476, 650, 680, 707
SfaNI	GCATC	4 cut(s)	16, 397, 511, 736
SinI	GGWCC	2 cut(s)	379, 562
SmiMI	CAYNNNNRTG	1 cut(s)	312
SmlI	CTYRAG	2 cut(s)	148, 475
SmoI	CTYRAG	2 cut(s)	148, 475
Sse9I	AATT	2 cut(s)	187, 299
SsiI	CCGC	2 cut(s)	539, 699
SspMI	CTAG	6 cut(s)	78, 126, 132, 165, 762, 771
StyD4I	CCNGG	3 cut(s)	464, 701, 828
StyI	CCWWGG	1 cut(s)	340
TaaI	ACNGT	2 cut(s)	566, 620
TaqI	TCGA	1 cut(s)	823
TasI	AATT	2 cut(s)	187, 299
TatI	WGTACW	1 cut(s)	710
TfiI	GAWTC	3 cut(s)	98, 287, 584
Tru1I	TTAA	1 cut(s)	680
Tru9I	TTAA	1 cut(s)	680
TscAI	CASTG	1 cut(s)	794
TseFI	GTSAC	1 cut(s)	344
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	3 cut(s)	62, 198, 414
TspGWI	ACGGA	3 cut(s)	110, 338, 528
TspRI	CASTG	1 cut(s)	794
VpaK11BI	GGWCC	2 cut(s)	379, 562
XbaI	TCTAGA	1 cut(s)	131
XmnI	GAANNNNTTC	1 cut(s)	251
XspI	CTAG	6 cut(s)	78, 126, 132, 165, 762, 771
Zsp2I	ATGCAT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.