Rmu_co8463189.1_g000001

Superkiller viralicidic activity 2-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8463189.1
Physical Location & Seq
Forward (+)
1 .. 1565
1565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8463189.1_g000001.1.cds

Sequence Viewer

Length: 556 bp
gtatgttgtgcaaagaactagttctagagatgggagttactcaagttttgctggttctagtagaagatacgacaatgaaaattatgctccgaagggcaccggccaccatagaccttcaggtgaagagaacgcttacttgaaggactttaatcacaggaagaacagaaaatatgttacaagtgatgatgttgtgcagttgaggggtaaggttgcttgtgaaatcagtagtgcagatgagttgaccctcacagagcttatgttcaatggcgttttcaaggacagaaaggttgaaattgacatcgatagctttgtgagttcatttcggcctgatattatggaggctacatatgcttgtgcaaaagggtcaaaattttacaagataatgtcagttacaggggtttttgagggtagcttaatcagggcaattgggagattagaggaagttcttcagcaacttatacacgcagccaattctattggagaaattgatcttttgaggagggctgtttcaaaaattaagagagacattgtctttgcagcttccctatacttgtaa

Protein Analysis

184

Amino Acids

20.72

Weight (kDa)

8.81

Isoelectric Point (pI)

44.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000557)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10320 AT1G10320
fragaria_vesca FvH4_1g01270 FvH4_5g28020
malus_domestica MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica Prupe.1G585000_v2.0.a1
pyrus_communis pycom05g24740 pycom15g39000
rosa_chinensis RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 96
AcoI YGGCCR 1 cut(s) 101
AcsI RAATTY 1 cut(s) 369
AcuI CTGAAG 2 cut(s) 100, 432
AgsI TTSAA 5 cut(s) 140, 263, 275, 291, 511
AhlI ACTAGT 1 cut(s) 18
AluBI AGCT 4 cut(s) 254, 307, 412, 540
AluI AGCT 4 cut(s) 254, 307, 412, 540
Alw26I GTCTC 1 cut(s) 517
AoxI GGCC 2 cut(s) 101, 324
ApeKI GCWGC 2 cut(s) 465, 537
ApoI RAATTY 1 cut(s) 369
ArsI GACNNNNNNTTYG 2 cut(s) 516, 548
Asp700I GAANNNNTTC 2 cut(s) 20, 445
AsuHPI GGTGA 1 cut(s) 132
BaeGI GKGCMC 1 cut(s) 99
BanI GGYRCC 1 cut(s) 96
BbvI GCAGC 2 cut(s) 477, 549
BccI CCATC 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 517
BcuI ACTAGT 1 cut(s) 18
BfaI CTAG 3 cut(s) 19, 25, 58
BisI GCNGC 2 cut(s) 466, 538
BlsI GCNGC 2 cut(s) 467, 539
BmiI GGNNCC 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 26
Bsa29I ATCGAT 1 cut(s) 301
Bse118I RCCGGY 1 cut(s) 99
BseCI ATCGAT 1 cut(s) 301
BseRI GAGGAG 1 cut(s) 512
BseSI GKGCMC 1 cut(s) 99
BseXI GCAGC 2 cut(s) 477, 549
BsgI GTGCAG 2 cut(s) 213, 250
BshFI GGCC 2 cut(s) 103, 326
BshNI GGYRCC 1 cut(s) 96
BshVI ATCGAT 1 cut(s) 301
BsiSI CCGG 1 cut(s) 100
BsmAI GTCTC 1 cut(s) 517
BsnI GGCC 2 cut(s) 103, 326
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 1 cut(s) 488
BspANI GGCC 2 cut(s) 103, 326
BspDI ATCGAT 1 cut(s) 301
BspLI GGNNCC 1 cut(s) 98
BspT107I GGYRCC 1 cut(s) 96
BsrFI RCCGGY 1 cut(s) 99
BssAI RCCGGY 1 cut(s) 99
BssMI GATC 1 cut(s) 488
Bst6I CTCTTC 1 cut(s) 118
BstKTI GATC 1 cut(s) 491
BstMAI GTCTC 1 cut(s) 517
BstMBI GATC 1 cut(s) 488
BstMWI GCNNNNNNNGC 1 cut(s) 348
BstSLI GKGCMC 1 cut(s) 99
BstV1I GCAGC 2 cut(s) 477, 549
Bsu15I ATCGAT 1 cut(s) 301
BsuRI GGCC 2 cut(s) 103, 326
BsuTUI ATCGAT 1 cut(s) 301
Cfr10I RCCGGY 1 cut(s) 99
ClaI ATCGAT 1 cut(s) 301
CviJI RGCY 9 cut(s) 103, 254, 307, 326, 342, 412, 468, 504, 540
CviKI_1 RGCY 9 cut(s) 103, 254, 307, 326, 342, 412, 468, 504, 540
DpnI GATC 1 cut(s) 490
DpnII GATC 1 cut(s) 488
EaeI YGGCCR 1 cut(s) 101
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
Eco57I CTGAAG 2 cut(s) 100, 432
FauNDI CATATG 1 cut(s) 347
Fnu4HI GCNGC 2 cut(s) 466, 538
Fsp4HI GCNGC 2 cut(s) 466, 538
FspBI CTAG 3 cut(s) 19, 25, 58
GluI GCNGC 2 cut(s) 466, 538
HaeIII GGCC 2 cut(s) 103, 326
HapII CCGG 1 cut(s) 100
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HpaII CCGG 1 cut(s) 100
HphI GGTGA 1 cut(s) 132
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 1 cut(s) 25
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 3 cut(s) 86, 124, 134
HpyCH4V TGCA 5 cut(s) 11, 194, 231, 357, 537
HpyF10VI GCNNNNNNNGC 1 cut(s) 348
Kzo9I GATC 1 cut(s) 488
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 7 cut(s) 37, 103, 113, 140, 340, 379, 404
Lsp1109I GCAGC 2 cut(s) 477, 549
MaeI CTAG 3 cut(s) 19, 25, 58
MaeIII GTNAC 3 cut(s) 36, 173, 389
MalI GATC 1 cut(s) 490
MboI GATC 1 cut(s) 488
MboII GAAGA 4 cut(s) 76, 135, 170, 438
MfeI CAATTG 1 cut(s) 424
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 7 cut(s) 80, 292, 369, 424, 470, 484, 514
MnlI CCTC 7 cut(s) 193, 255, 332, 398, 431, 490, 493
MroXI GAANNNNTTC 2 cut(s) 20, 445
MseI TTAA 3 cut(s) 148, 414, 517
MspI CCGG 1 cut(s) 100
MunI CAATTG 1 cut(s) 424
MwoI GCNNNNNNNGC 1 cut(s) 348
NdeI CATATG 1 cut(s) 347
NdeII GATC 1 cut(s) 488
NlaIV GGNNCC 1 cut(s) 98
PdmI GAANNNNTTC 2 cut(s) 20, 445
PflFI GACNNNGTC 1 cut(s) 528
PkrI GCNGC 2 cut(s) 467, 539
PspN4I GGNNCC 1 cut(s) 98
PsyI GACNNNGTC 1 cut(s) 528
SaqAI TTAA 3 cut(s) 148, 414, 517
SatI GCNGC 2 cut(s) 466, 538
Sau3AI GATC 1 cut(s) 488
SduI GDGCHC 1 cut(s) 99
SetI ASST 8 cut(s) 116, 122, 211, 256, 289, 309, 414, 542
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
SpeI ACTAGT 1 cut(s) 18
Sse9I AATT 7 cut(s) 80, 292, 369, 424, 470, 484, 514
SspMI CTAG 3 cut(s) 19, 25, 58
TaqI TCGA 1 cut(s) 301
TasI AATT 7 cut(s) 80, 292, 369, 424, 470, 484, 514
Tru1I TTAA 3 cut(s) 148, 414, 517
Tru9I TTAA 3 cut(s) 148, 414, 517
TseI GCWGC 2 cut(s) 465, 537
TspDTI ATGAA 2 cut(s) 91, 307
Tth111I GACNNNGTC 1 cut(s) 528
XapI RAATTY 1 cut(s) 369
XbaI TCTAGA 1 cut(s) 24
XmnI GAANNNNTTC 2 cut(s) 20, 445
XspI CTAG 3 cut(s) 19, 25, 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.