Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Reverse (-)

43206337 .. 43207206

Gene Structure 870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG341800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGTTCAATGGCGTTTTCAAGGACAGAAAGGTAGAAGAGATGGTATCTCTTCTCTTATGTTTTGTTTGGCGGGAAAAACTAAAAGATGCTACAAAACCAAGGAAGAAATTGACCTGCTCTTCTTGCAATTACAAGAAACTGCTCGGAGGGTGGCTGAAGTTCAGCTTGAGTTTTTTTCTGGTTGAAATTGACATCGATAGCTTTGTGAGTTCATTTCGGCCTGATATTATGGAGGCTACATATGCTTGGGCAGAAGGGTCAAAATTTTACGAGATAATGTCAGATTTTGAGGGTAGCTTAATCAGGGCAATTAGGAGATTAGAGGAAGTTCTTCAGCAACTTATACACGCAGCCAATTCTATTGGAGAAATTGATCTTTTGAGGAGGCTGTTTCAAAAATTAAGAGAGACATTGTCTTTGCAGCTTCCCTATACTTGTAATTTTTGGCTGGAATGTTTTTGCCATCGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000460 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C rRNA_proc-arch

Protein Analysis

157

Amino Acids

18.57

Weight (kDa)

8.53

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSHCT	PF08148	1 - 128	2.9e-21	DSHCT (NUC185) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	122
AciI	CCGC	1 cut(s)	70
AcsI	RAATTY	1 cut(s)	263
AcuI	CTGAAG	2 cut(s)	176, 317
AgsI	TTSAA	4 cut(s)	7, 19, 185, 395
AluBI	AGCT	4 cut(s)	165, 201, 297, 424
AluI	AGCT	4 cut(s)	165, 201, 297, 424
Alw26I	GTCTC	1 cut(s)	401
AoxI	GGCC	1 cut(s)	218
ApeKI	GCWGC	2 cut(s)	350, 421
ApoI	RAATTY	1 cut(s)	263
ArsI	GACNNNNNNTTYG	2 cut(s)	400, 432
Asp700I	GAANNNNTTC	1 cut(s)	330
BbvI	GCAGC	2 cut(s)	362, 433
BccI	CCATC	2 cut(s)	34, 471
BcoDI	GTCTC	1 cut(s)	401
BfuAI	ACCTGC	1 cut(s)	122
BisI	GCNGC	2 cut(s)	351, 422
BlsI	GCNGC	2 cut(s)	352, 423
BmsI	GCATC	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	187
Bsa29I	ATCGAT	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	98
BseCI	ATCGAT	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	98
BseRI	GAGGAG	1 cut(s)	397
BseXI	GCAGC	2 cut(s)	362, 433
BshFI	GGCC	1 cut(s)	220
BshVI	ATCGAT	1 cut(s)	195
BsmAI	GTCTC	1 cut(s)	401
BsnI	GGCC	1 cut(s)	220
Bsp143I	GATC	1 cut(s)	373
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	1 cut(s)	220
BspDI	ATCGAT	1 cut(s)	195
BspMI	ACCTGC	1 cut(s)	122
BspQI	GCTCTTC	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	98
BssMI	GATC	1 cut(s)	373
BssT1I	CCWWGG	1 cut(s)	98
Bst6I	CTCTTC	3 cut(s)	30, 54, 124
BstKTI	GATC	1 cut(s)	376
BstMAI	GTCTC	1 cut(s)	401
BstMBI	GATC	1 cut(s)	373
BstMWI	GCNNNNNNNGC	2 cut(s)	123, 242
BstV1I	GCAGC	2 cut(s)	362, 433
Bsu15I	ATCGAT	1 cut(s)	195
BsuRI	GGCC	1 cut(s)	220
BsuTUI	ATCGAT	1 cut(s)	195
BveI	ACCTGC	1 cut(s)	122
ClaI	ATCGAT	1 cut(s)	195
DpnI	GATC	1 cut(s)	375
DpnII	GATC	1 cut(s)	373
Eam1104I	CTCTTC	3 cut(s)	30, 54, 124
EarI	CTCTTC	3 cut(s)	30, 54, 124
Eco130I	CCWWGG	1 cut(s)	98
Eco57I	CTGAAG	2 cut(s)	176, 317
EcoT14I	CCWWGG	1 cut(s)	98
ErhI	CCWWGG	1 cut(s)	98
FaiI	YATR	6 cut(s)	58, 230, 241, 243, 344, 432
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FauI	CCCGC	1 cut(s)	63
FauNDI	CATATG	1 cut(s)	241
Fnu4HI	GCNGC	2 cut(s)	351, 422
Fsp4HI	GCNGC	2 cut(s)	351, 422
GluI	GCNGC	2 cut(s)	351, 422
HaeIII	GGCC	1 cut(s)	220
Hpy188I	TCNGA	2 cut(s)	146, 283
HpyAV	CCTTC	1 cut(s)	248
HpyCH4V	TGCA	2 cut(s)	126, 421
HpyF10VI	GCNNNNNNNGC	2 cut(s)	123, 242
Kzo9I	GATC	1 cut(s)	373
LguI	GCTCTTC	1 cut(s)	124
LpnPI	CCDG	5 cut(s)	127, 164, 234, 289, 434
Lsp1109I	GCAGC	2 cut(s)	362, 433
LweI	GCATC	1 cut(s)	76
MalI	GATC	1 cut(s)	375
MboI	GATC	1 cut(s)	373
MboII	GAAGA	5 cut(s)	41, 47, 111, 115, 323
MluCI	AATT	9 cut(s)	107, 127, 186, 263, 309, 355, 369, 398, 439
MnlI	CCTC	6 cut(s)	140, 226, 283, 316, 375, 378
MroXI	GAANNNNTTC	1 cut(s)	330
MseI	TTAA	2 cut(s)	299, 401
MwoI	GCNNNNNNNGC	2 cut(s)	123, 242
NdeI	CATATG	1 cut(s)	241
NdeII	GATC	1 cut(s)	373
PciSI	GCTCTTC	1 cut(s)	124
PdmI	GAANNNNTTC	1 cut(s)	330
PflFI	GACNNNGTC	1 cut(s)	412
PkrI	GCNGC	2 cut(s)	352, 423
PsyI	GACNNNGTC	1 cut(s)	412
SapI	GCTCTTC	1 cut(s)	124
SaqAI	TTAA	2 cut(s)	299, 401
SatI	GCNGC	2 cut(s)	351, 422
Sau3AI	GATC	1 cut(s)	373
SetI	ASST	6 cut(s)	33, 116, 167, 203, 299, 426
SfaNI	GCATC	1 cut(s)	76
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
Sse9I	AATT	9 cut(s)	107, 127, 186, 263, 309, 355, 369, 398, 439
SsiI	CCGC	1 cut(s)	70
StyI	CCWWGG	1 cut(s)	98
TaqI	TCGA	1 cut(s)	195
TasI	AATT	9 cut(s)	107, 127, 186, 263, 309, 355, 369, 398, 439
Tru1I	TTAA	2 cut(s)	299, 401
Tru9I	TTAA	2 cut(s)	299, 401
TseI	GCWGC	2 cut(s)	350, 421
TspDTI	ATGAA	1 cut(s)	201
Tth111I	GACNNNGTC	1 cut(s)	412
XapI	RAATTY	1 cut(s)	263
XmnI	GAANNNNTTC	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.