zinc finger CCCH domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Agenet | PF05641 | 1862 - 1914 | 1.4e-10 | Agenet domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 5507 |
| AarI | CACCTGC | 1 cut(s) | 4033 |
| Acc16I | TGCGCA | 1 cut(s) | 3594 |
| Acc36I | ACCTGC | 1 cut(s) | 4033 |
| Acc65I | GGTACC | 1 cut(s) | 3434 |
| AccB1I | GGYRCC | 2 cut(s) | 3236, 3434 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 6833 |
| AccBSI | CCGCTC | 1 cut(s) | 362 |
| AccI | GTMKAC | 2 cut(s) | 2216, 3128 |
| AccII | CGCG | 1 cut(s) | 5772 |
| AccIII | TCCGGA | 1 cut(s) | 2056 |
| AcoI | YGGCCR | 2 cut(s) | 1957, 6357 |
| AcyI | GRCGYC | 1 cut(s) | 5226 |
| AflIII | ACRYGT | 3 cut(s) | 1810, 5770, 5971 |
| AgeI | ACCGGT | 1 cut(s) | 589 |
| AhlI | ACTAGT | 3 cut(s) | 3659, 4619, 6368 |
| AjiI | CACGTC | 1 cut(s) | 303 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2074, 2106 |
| Alw21I | GWGCWC | 5 cut(s) | 62, 266, 1931, 3760, 6715 |
| Aor13HI | TCCGGA | 1 cut(s) | 2056 |
| AseI | ATTAAT | 1 cut(s) | 3915 |
| AsiGI | ACCGGT | 1 cut(s) | 589 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 354, 517, 7033 |
| Asp718I | GGTACC | 1 cut(s) | 3434 |
| AspLEI | GCGC | 2 cut(s) | 3595, 6722 |
| AsuNHI | GCTAGC | 1 cut(s) | 5248 |
| AvaII | GGWCC | 8 cut(s) | 2687, 2990, 3833, 4265, 4562, 5330, 6033, 6610 |
| AxyI | CCTNAGG | 2 cut(s) | 3355, 5334 |
| BaeGI | GKGCMC | 1 cut(s) | 3564 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3141, 3174 |
| BalI | TGGCCA | 2 cut(s) | 1959, 6359 |
| BamHI | GGATCC | 1 cut(s) | 616 |
| BanI | GGYRCC | 2 cut(s) | 3236, 3434 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 570, 602 |
| BauI | CACGAG | 3 cut(s) | 216, 3393, 4237 |
| BbsI | GAAGAC | 5 cut(s) | 86, 1758, 2132, 2514, 2937 |
| Bbv12I | GWGCWC | 5 cut(s) | 62, 266, 1931, 3760, 6715 |
| BbvCI | CCTCAGC | 3 cut(s) | 5019, 5118, 6648 |
| BceAI | ACGGC | 1 cut(s) | 6067 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 240, 274, 1922, 1956, 3360, 3394, 4555, 4589 |
| BciVI | GTATCC | 3 cut(s) | 4393, 4714, 5868 |
| BclI | TGATCA | 6 cut(s) | 1150, 1558, 1789, 2761, 3976, 5454 |
| BcuI | ACTAGT | 3 cut(s) | 3659, 4619, 6368 |
| BfuAI | ACCTGC | 1 cut(s) | 4033 |
| BfuI | GTATCC | 3 cut(s) | 4393, 4714, 5868 |
| BglII | AGATCT | 7 cut(s) | 475, 3375, 3682, 3762, 4539, 4729, 6512 |
| BlpI | GCTNAGC | 1 cut(s) | 5244 |
| BmcAI | AGTACT | 3 cut(s) | 3614, 5010, 5065 |
| Bme18I | GGWCC | 8 cut(s) | 2687, 2990, 3833, 4265, 4562, 5330, 6033, 6610 |
| BmgBI | CACGTC | 1 cut(s) | 303 |
| BmrI | ACTGGG | 2 cut(s) | 1623, 4434 |
| BmtI | GCTAGC | 1 cut(s) | 5252 |
| BmuI | ACTGGG | 2 cut(s) | 1623, 4434 |
| BpiI | GAAGAC | 5 cut(s) | 86, 1758, 2132, 2514, 2937 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 197, 229 |
| BpmI | CTGGAG | 8 cut(s) | 57, 714, 1104, 1452, 2145, 3684, 5082, 6583 |
| Bpu10I | CCTNAGC | 6 cut(s) | 4782, 5019, 5118, 5710, 6500, 6648 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 5244 |
| BpuEI | CTTGAG | 6 cut(s) | 575, 1687, 2877, 4703, 5574, 5940 |
| BsaAI | YACGTR | 1 cut(s) | 3755 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2052, 4891 |
| BsaHI | GRCGYC | 1 cut(s) | 5226 |
| BsaI | GGTCTC | 3 cut(s) | 1091, 1730, 3342 |
| BsaWI | WCCGGW | 2 cut(s) | 589, 2056 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 3851, 3881, 5847, 5877 |
| Bse118I | RCCGGY | 1 cut(s) | 589 |
| Bse21I | CCTNAGG | 2 cut(s) | 3355, 5334 |
| Bse3DI | GCAATG | 6 cut(s) | 1082, 2452, 4460, 4997, 5835, 6154 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2052, 4891 |
| BseAI | TCCGGA | 1 cut(s) | 2056 |
| BseJI | GATNNNNATC | 2 cut(s) | 2052, 4891 |
| BseMI | GCAATG | 6 cut(s) | 1082, 2452, 4460, 4997, 5835, 6154 |
| BseRI | GAGGAG | 5 cut(s) | 1949, 3555, 4009, 4393, 6869 |
| BseSI | GKGCMC | 1 cut(s) | 3564 |
| BseYI | CCCAGC | 2 cut(s) | 1181, 5528 |
| BsgI | GTGCAG | 2 cut(s) | 270, 1025 |
| Bsh1236I | CGCG | 1 cut(s) | 5772 |
| BshNI | GGYRCC | 2 cut(s) | 3236, 3434 |
| BshTI | ACCGGT | 1 cut(s) | 589 |
| BsiHKAI | GWGCWC | 5 cut(s) | 62, 266, 1931, 3760, 6715 |
| BsiSI | CCGG | 3 cut(s) | 510, 590, 2057 |
| BslFI | GGGAC | 5 cut(s) | 3200, 4053, 4237, 4251, 6572 |
| BsmBI | CGTCTC | 1 cut(s) | 6674 |
| BsmFI | GGGAC | 5 cut(s) | 3200, 4053, 4237, 4251, 6572 |
| BsmI | GAATGC | 7 cut(s) | 1298, 2962, 3145, 3868, 3998, 4101, 5083 |
| Bso31I | GGTCTC | 3 cut(s) | 1091, 1730, 3342 |
| Bsp1286I | GDGCHC | 6 cut(s) | 62, 266, 1931, 3564, 3760, 6715 |
| Bsp13I | TCCGGA | 1 cut(s) | 2056 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 5244 |
| Bsp19I | CCATGG | 1 cut(s) | 6060 |
| BspEI | TCCGGA | 1 cut(s) | 2056 |
| BspFNI | CGCG | 1 cut(s) | 5772 |
| BspHI | TCATGA | 2 cut(s) | 886, 2143 |
| BspMAI | CTGCAG | 8 cut(s) | 2401, 2575, 3741, 4297, 4831, 4972, 5200, 5554 |
| BspMI | ACCTGC | 1 cut(s) | 4033 |
| BspOI | GCTAGC | 1 cut(s) | 5252 |
| BspQI | GCTCTTC | 4 cut(s) | 2095, 6061, 6168, 6703 |
| BspT107I | GGYRCC | 2 cut(s) | 3236, 3434 |
| BspTNI | GGTCTC | 3 cut(s) | 1091, 1730, 3342 |
| BsrBI | CCGCTC | 1 cut(s) | 362 |
| BsrDI | GCAATG | 6 cut(s) | 1082, 2452, 4460, 4997, 5835, 6154 |
| BsrFI | RCCGGY | 1 cut(s) | 589 |
| BssAI | RCCGGY | 1 cut(s) | 589 |
| BssNI | GRCGYC | 1 cut(s) | 5226 |
| BssSI | CACGAG | 3 cut(s) | 216, 3393, 4237 |
| BssT1I | CCWWGG | 3 cut(s) | 1210, 2469, 6060 |
| Bst2BI | CACGAG | 3 cut(s) | 216, 3393, 4237 |
| Bst6I | CTCTTC | 5 cut(s) | 864, 2095, 6061, 6168, 6703 |
| BstACI | GRCGYC | 1 cut(s) | 5226 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 3745, 4967, 4994 |
| BstBAI | YACGTR | 1 cut(s) | 3755 |
| BstDSI | CCRYGG | 1 cut(s) | 6060 |
| BstFNI | CGCG | 1 cut(s) | 5772 |
| BstHHI | GCGC | 2 cut(s) | 3595, 6722 |
| BstNSI | RCATGY | 5 cut(s) | 1622, 1814, 2088, 4400, 5975 |
| BstSLI | GKGCMC | 1 cut(s) | 3564 |
| BstUI | CGCG | 1 cut(s) | 5772 |
| BstV2I | GAAGAC | 5 cut(s) | 86, 1758, 2132, 2514, 2937 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 6607 |
| Bsu36I | CCTNAGG | 2 cut(s) | 3355, 5334 |
| BsuI | GTATCC | 3 cut(s) | 4393, 4714, 5868 |
| BtgI | CCRYGG | 1 cut(s) | 6060 |
| BtrI | CACGTC | 1 cut(s) | 303 |
| BtsI | GCAGTG | 7 cut(s) | 823, 1072, 3562, 4647, 5457, 5523, 5631 |
| BveI | ACCTGC | 1 cut(s) | 4033 |
| CciI | TCATGA | 2 cut(s) | 886, 2143 |
| CfoI | GCGC | 2 cut(s) | 3595, 6722 |
| Cfr10I | RCCGGY | 1 cut(s) | 589 |
| CseI | GACGC | 2 cut(s) | 5234, 5547 |
| CspAI | ACCGGT | 1 cut(s) | 589 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 4461, 4496 |
| DraI | TTTAAA | 2 cut(s) | 1348, 6141 |
| EaeI | YGGCCR | 2 cut(s) | 1957, 6357 |
| Eam1104I | CTCTTC | 5 cut(s) | 864, 2095, 6061, 6168, 6703 |
| EarI | CTCTTC | 5 cut(s) | 864, 2095, 6061, 6168, 6703 |
| EciI | GGCGGA | 2 cut(s) | 292, 5833 |
| Eco130I | CCWWGG | 3 cut(s) | 1210, 2469, 6060 |
| Eco31I | GGTCTC | 3 cut(s) | 1091, 1730, 3342 |
| Eco32I | GATATC | 1 cut(s) | 3247 |
| Eco47I | GGWCC | 8 cut(s) | 2687, 2990, 3833, 4265, 4562, 5330, 6033, 6610 |
| Eco81I | CCTNAGG | 2 cut(s) | 3355, 5334 |
| EcoO109I | RGGNCCY | 4 cut(s) | 2693, 3833, 4123, 4265 |
| EcoRI | GAATTC | 3 cut(s) | 1915, 3688, 6930 |
| EcoRV | GATATC | 1 cut(s) | 3247 |
| EcoT14I | CCWWGG | 3 cut(s) | 1210, 2469, 6060 |
| EcoT22I | ATGCAT | 4 cut(s) | 747, 1945, 2452, 5083 |
| ErhI | CCWWGG | 3 cut(s) | 1210, 2469, 6060 |
| Esp3I | CGTCTC | 1 cut(s) | 6674 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 4716, 4748, 4755, 4787 |
| FaqI | GGGAC | 5 cut(s) | 3200, 4053, 4237, 4251, 6572 |
| FauI | CCCGC | 1 cut(s) | 367 |
| FauNDI | CATATG | 2 cut(s) | 88, 3826 |
| FbaI | TGATCA | 6 cut(s) | 1150, 1558, 1789, 2761, 3976, 5454 |
| FblI | GTMKAC | 2 cut(s) | 2216, 3128 |
| FspI | TGCGCA | 1 cut(s) | 3594 |
| GlaI | GCGC | 2 cut(s) | 3594, 6721 |
| GsaI | CCCAGC | 2 cut(s) | 1185, 5532 |
| GsuI | CTGGAG | 8 cut(s) | 57, 714, 1104, 1452, 2145, 3684, 5082, 6583 |
| HapII | CCGG | 3 cut(s) | 510, 590, 2057 |
| HgaI | GACGC | 2 cut(s) | 5234, 5547 |
| HhaI | GCGC | 2 cut(s) | 3595, 6722 |
| Hin1I | GRCGYC | 1 cut(s) | 5226 |
| Hin6I | GCGC | 2 cut(s) | 3593, 6720 |
| HinP1I | GCGC | 2 cut(s) | 3593, 6720 |
| HincII | GTYRAC | 3 cut(s) | 3129, 6379, 6891 |
| HindII | GTYRAC | 3 cut(s) | 3129, 6379, 6891 |
| HindIII | AAGCTT | 5 cut(s) | 3807, 4809, 5670, 5979, 6248 |
| HpaI | GTTAAC | 1 cut(s) | 6379 |
| HpaII | CCGG | 3 cut(s) | 510, 590, 2057 |
| Hpy166II | GTNNAC | 9 cut(s) | 1273, 2217, 2810, 3129, 3989, 5637, 5944, 6379, 6891 |
| Hpy8I | GTNNAC | 9 cut(s) | 1273, 2217, 2810, 3129, 3989, 5637, 5944, 6379, 6891 |
| Hpy99I | CGWCG | 1 cut(s) | 6751 |
| HpyCH4IV | ACGT | 5 cut(s) | 302, 1013, 2556, 3156, 3754 |
| HpySE526I | ACGT | 5 cut(s) | 302, 1013, 2556, 3156, 3754 |
| Hsp92I | GRCGYC | 1 cut(s) | 5226 |
| HspAI | GCGC | 2 cut(s) | 3593, 6720 |
| KflI | GGGWCCC | 1 cut(s) | 4265 |
| Kpn2I | TCCGGA | 1 cut(s) | 2056 |
| KpnI | GGTACC | 1 cut(s) | 3438 |
| Ksp22I | TGATCA | 6 cut(s) | 1150, 1558, 1789, 2761, 3976, 5454 |
| KspAI | GTTAAC | 1 cut(s) | 6379 |
| LguI | GCTCTTC | 4 cut(s) | 2095, 6061, 6168, 6703 |
| MaeII | ACGT | 5 cut(s) | 302, 1013, 2556, 3156, 3754 |
| MbiI | CCGCTC | 1 cut(s) | 362 |
| MfeI | CAATTG | 1 cut(s) | 64 |
| MhlI | GDGCHC | 6 cut(s) | 62, 266, 1931, 3564, 3760, 6715 |
| MlsI | TGGCCA | 2 cut(s) | 1959, 6359 |
| MluI | ACGCGT | 1 cut(s) | 5770 |
| MluNI | TGGCCA | 2 cut(s) | 1959, 6359 |
| Mox20I | TGGCCA | 2 cut(s) | 1959, 6359 |
| Mph1103I | ATGCAT | 4 cut(s) | 747, 1945, 2452, 5083 |
| MroI | TCCGGA | 1 cut(s) | 2056 |
| MroXI | GAANNNNTTC | 3 cut(s) | 354, 517, 7033 |
| MscI | TGGCCA | 2 cut(s) | 1959, 6359 |
| MslI | CAYNNNNRTG | 1 cut(s) | 3600 |
| Msp20I | TGGCCA | 2 cut(s) | 1959, 6359 |
| MspA1I | CMGCKG | 6 cut(s) | 4298, 4832, 4946, 4967, 4973, 5886 |
| MspI | CCGG | 3 cut(s) | 510, 590, 2057 |
| MunI | CAATTG | 1 cut(s) | 64 |
| Mva1269I | GAATGC | 7 cut(s) | 1298, 2962, 3145, 3868, 3998, 4101, 5083 |
| MvnI | CGCG | 1 cut(s) | 5772 |
| NcoI | CCATGG | 1 cut(s) | 6060 |
| NdeI | CATATG | 2 cut(s) | 88, 3826 |
| NheI | GCTAGC | 1 cut(s) | 5248 |
| NmeAIII | GCCGAG | 3 cut(s) | 529, 2191, 4170 |
| NmuCI | GTSAC | 8 cut(s) | 1706, 2119, 2193, 2270, 3602, 4645, 4838, 5902 |
| NsbI | TGCGCA | 1 cut(s) | 3594 |
| NsiI | ATGCAT | 4 cut(s) | 747, 1945, 2452, 5083 |
| NspI | RCATGY | 5 cut(s) | 1622, 1814, 2088, 4400, 5975 |
| PaeI | GCATGC | 2 cut(s) | 1622, 4400 |
| PagI | TCATGA | 2 cut(s) | 886, 2143 |
| PaqCI | CACCTGC | 1 cut(s) | 4033 |
| PasI | CCCWGGG | 2 cut(s) | 3565, 4269 |
| PciI | ACATGT | 2 cut(s) | 1810, 5971 |
| PciSI | GCTCTTC | 4 cut(s) | 2095, 6061, 6168, 6703 |
| PctI | GAATGC | 7 cut(s) | 1298, 2962, 3145, 3868, 3998, 4101, 5083 |
| PdmI | GAANNNNTTC | 3 cut(s) | 354, 517, 7033 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 6833 |
| PfoI | TCCNGGA | 2 cut(s) | 1081, 5098 |
| PinAI | ACCGGT | 1 cut(s) | 589 |
| Ppu21I | YACGTR | 1 cut(s) | 3755 |
| PpuMI | RGGWCCY | 2 cut(s) | 3833, 4265 |
| PscI | ACATGT | 2 cut(s) | 1810, 5971 |
| PshBI | ATTAAT | 1 cut(s) | 3915 |
| PsiI | TTATAA | 1 cut(s) | 5507 |
| Psp5II | RGGWCCY | 2 cut(s) | 3833, 4265 |
| PspFI | CCCAGC | 2 cut(s) | 1181, 5528 |
| PspPPI | RGGWCCY | 2 cut(s) | 3833, 4265 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2550, 2582 |
| PstI | CTGCAG | 8 cut(s) | 2401, 2575, 3741, 4297, 4831, 4972, 5200, 5554 |
| PvuII | CAGCTG | 5 cut(s) | 4298, 4832, 4967, 4973, 5886 |
| RseI | CAYNNNNRTG | 1 cut(s) | 3600 |
| SalI | GTCGAC | 1 cut(s) | 3127 |
| SapI | GCTCTTC | 4 cut(s) | 2095, 6061, 6168, 6703 |
| ScaI | AGTACT | 3 cut(s) | 3614, 5010, 5065 |
| SduI | GDGCHC | 6 cut(s) | 62, 266, 1931, 3564, 3760, 6715 |
| SinI | GGWCC | 8 cut(s) | 2687, 2990, 3833, 4265, 4562, 5330, 6033, 6610 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 3600 |
| SmlI | CTYRAG | 6 cut(s) | 554, 1666, 2892, 4718, 5589, 5955 |
| SmoI | CTYRAG | 6 cut(s) | 554, 1666, 2892, 4718, 5589, 5955 |
| SpeI | ACTAGT | 3 cut(s) | 3659, 4619, 6368 |
| SphI | GCATGC | 2 cut(s) | 1622, 4400 |
| SspI | AATATT | 1 cut(s) | 6413 |
| StyI | CCWWGG | 3 cut(s) | 1210, 2469, 6060 |
| TaiI | ACGT | 5 cut(s) | 305, 1016, 2559, 3159, 3757 |
| TaqI | TCGA | 5 cut(s) | 2628, 3128, 4033, 6240, 6906 |
| TatI | WGTACW | 5 cut(s) | 1496, 3612, 4331, 5008, 5063 |
| TauI | GCSGC | 8 cut(s) | 2499, 3146, 3174, 4943, 4946, 4988, 5255, 6079 |
| TseFI | GTSAC | 8 cut(s) | 1706, 2119, 2193, 2270, 3602, 4645, 4838, 5902 |
| Tsp45I | GTSAC | 8 cut(s) | 1706, 2119, 2193, 2270, 3602, 4645, 4838, 5902 |
| TspGWI | ACGGA | 7 cut(s) | 1688, 2870, 3460, 4173, 6428, 6735, 6985 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 6833 |
| VpaK11BI | GGWCC | 8 cut(s) | 2687, 2990, 3833, 4265, 4562, 5330, 6033, 6610 |
| VspI | ATTAAT | 1 cut(s) | 3915 |
| XbaI | TCTAGA | 6 cut(s) | 1231, 1447, 1894, 1901, 4523, 7037 |
| XceI | RCATGY | 5 cut(s) | 1622, 1814, 2088, 4400, 5975 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2810 |
| XmiI | GTMKAC | 2 cut(s) | 2216, 3128 |
| XmnI | GAANNNNTTC | 3 cut(s) | 354, 517, 7033 |
| ZrmI | AGTACT | 3 cut(s) | 3614, 5010, 5065 |
| Zsp2I | ATGCAT | 4 cut(s) | 747, 1945, 2452, 5083 |