Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Forward (+)

32722803 .. 32723336

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG186100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGAAGGCAGCAGATTCTCCTGTTAAAATTTTGAAATCGTATGGAACCCCTGCGCCCTGCATTTTGGATCAAGATAATACGAGATGTGCCACTGATTTGCAGATTGACAAACAGGATCGCTGGGAACCTGAACTTGGTTGCGTGGAAAAACATAATTCTGAAGGAAAGGCAGGAAATTCGGAAAGCCATGAATCTCGCCGGCCGGGTCAATACAAAGGAAGGGATGAATCAAGTGAGTTTGAATCTAAATTGTACTATGACGATAAAGTTGGCAAGGCAGAACATTATGATCCTGGAGATGTAACTAGTTCAAAACACCGTAAGTCTAGGAGACAATCTGCAAACAGCAATGGTGAACGTGACAGTGGAAAAAGATCACGAGGTAGCAGCCAATCAGGGTATAGGAGGCACTCCAATAGCTCTGATGAGGTGACAGATTCTTCTGAAGAAAACAAAGAATCTAGAAGGAGACGCAATAAGCACCATGCGAGCCATAGATCTGGCGATCGCAAACGTCATCGTAAGAAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030628 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

177

Amino Acids

20.2

Weight (kDa)

9.49

Isoelectric Point (pI)

87.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	75, 123, 284
AcoI	YGGCCR	1 cut(s)	200
AcsI	RAATTY	2 cut(s)	27, 175
AcuI	CTGAAG	2 cut(s)	180, 465
AfaI	GTAC	1 cut(s)	254
AfiI	CCNNNNNNNGG	1 cut(s)	134
AgsI	TTSAA	3 cut(s)	34, 242, 312
AhlI	ACTAGT	1 cut(s)	305
AjnI	CCWGG	1 cut(s)	292
AjuI	GAANNNNNNNTTGG	2 cut(s)	117, 149
AluBI	AGCT	1 cut(s)	420
AluI	AGCT	1 cut(s)	420
Alw26I	GTCTC	2 cut(s)	325, 463
AlwI	GGATC	3 cut(s)	75, 123, 284
AoxI	GGCC	1 cut(s)	200
ApeKI	GCWGC	2 cut(s)	8, 387
ApoI	RAATTY	2 cut(s)	27, 175
AsiSI	GCGATCGC	1 cut(s)	508
AspLEI	GCGC	1 cut(s)	55
AsuC2I	CCSGG	1 cut(s)	204
AsuHPI	GGTGA	2 cut(s)	365, 442
BauI	CACGAG	1 cut(s)	378
BbvI	GCAGC	2 cut(s)	20, 399
BcgI	CGANNNNNNTGC	2 cut(s)	159, 193
BciT130I	CCWGG	1 cut(s)	294
BcnI	CCSGG	1 cut(s)	204
BcoDI	GTCTC	2 cut(s)	325, 463
BcuI	ACTAGT	1 cut(s)	305
BfaI	CTAG	3 cut(s)	306, 327, 462
BglII	AGATCT	1 cut(s)	497
BisI	GCNGC	2 cut(s)	9, 388
BlsI	GCNGC	2 cut(s)	10, 389
Bme1390I	CCNGG	2 cut(s)	204, 294
BmiI	GGNNCC	2 cut(s)	46, 126
BmrFI	CCNGG	2 cut(s)	204, 294
BpmI	CTGGAG	1 cut(s)	315
BpuMI	CCSGG	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse118I	RCCGGY	1 cut(s)	198
Bse3DI	GCAATG	1 cut(s)	355
BseBI	CCWGG	1 cut(s)	294
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseMI	GCAATG	1 cut(s)	355
BseX3I	CGGCCG	1 cut(s)	200
BseXI	GCAGC	2 cut(s)	20, 399
BseYI	CCCAGC	1 cut(s)	120
Bsh1285I	CGRYCG	2 cut(s)	203, 508
BshFI	GGCC	1 cut(s)	202
BsiEI	CGRYCG	2 cut(s)	203, 508
BsiSI	CCGG	2 cut(s)	199, 203
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmAI	GTCTC	2 cut(s)	325, 463
BsmBI	CGTCTC	1 cut(s)	463
BsnI	GGCC	1 cut(s)	202
Bsp143I	GATC	6 cut(s)	67, 115, 289, 374, 497, 505
BspANI	GGCC	1 cut(s)	202
BspLI	GGNNCC	2 cut(s)	46, 126
BspPI	GGATC	3 cut(s)	75, 123, 284
BsrDI	GCAATG	1 cut(s)	355
BsrFI	RCCGGY	1 cut(s)	198
BssAI	RCCGGY	1 cut(s)	198
BssMI	GATC	6 cut(s)	67, 115, 289, 374, 497, 505
BssSI	CACGAG	1 cut(s)	378
Bst2BI	CACGAG	1 cut(s)	378
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	2 cut(s)	320, 365
BstC8I	GCNNGC	2 cut(s)	200, 490
BstF5I	GGATG	1 cut(s)	229
BstHHI	GCGC	1 cut(s)	55
BstKTI	GATC	6 cut(s)	70, 118, 292, 377, 500, 508
BstMAI	GTCTC	2 cut(s)	325, 463
BstMBI	GATC	6 cut(s)	67, 115, 289, 374, 497, 505
BstMCI	CGRYCG	2 cut(s)	203, 508
BstNI	CCWGG	1 cut(s)	294
BstSCI	CCNGG	2 cut(s)	202, 292
BstV1I	GCAGC	2 cut(s)	20, 399
BstX2I	RGATCY	1 cut(s)	497
BstXI	CCANNNNNNTGG	1 cut(s)	500
BstYI	RGATCY	1 cut(s)	497
BstZI	CGGCCG	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	202
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	2 cut(s)	90, 370
Cac8I	GCNNGC	2 cut(s)	200, 490
CfoI	GCGC	1 cut(s)	55
Cfr10I	RCCGGY	1 cut(s)	198
CseI	GACGC	1 cut(s)	480
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	2 cut(s)	188, 485
CviJI	RGCY	5 cut(s)	186, 202, 390, 420, 492
CviKI_1	RGCY	5 cut(s)	186, 202, 390, 420, 492
CviQI	GTAC	1 cut(s)	253
DpnI	GATC	6 cut(s)	69, 117, 291, 376, 499, 507
DpnII	GATC	6 cut(s)	67, 115, 289, 374, 497, 505
EaeI	YGGCCR	1 cut(s)	200
EagI	CGGCCG	1 cut(s)	200
EclXI	CGGCCG	1 cut(s)	200
Eco52I	CGGCCG	1 cut(s)	200
Eco57I	CTGAAG	2 cut(s)	180, 465
EcoRII	CCWGG	1 cut(s)	292
Esp3I	CGTCTC	1 cut(s)	463
FaeI	CATG	2 cut(s)	191, 488
FaiI	YATR	8 cut(s)	42, 153, 189, 258, 288, 402, 486, 495
FatI	CATG	2 cut(s)	187, 484
Fnu4HI	GCNGC	2 cut(s)	9, 388
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	2 cut(s)	9, 388
FspBI	CTAG	3 cut(s)	306, 327, 462
GlaI	GCGC	1 cut(s)	54
GluI	GCNGC	2 cut(s)	9, 388
GsaI	CCCAGC	1 cut(s)	124
GsuI	CTGGAG	1 cut(s)	315
HaeIII	GGCC	1 cut(s)	202
HapII	CCGG	2 cut(s)	199, 203
HgaI	GACGC	1 cut(s)	480
HhaI	GCGC	1 cut(s)	55
Hin1II	CATG	2 cut(s)	191, 488
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
HinfI	GANTC	6 cut(s)	14, 191, 227, 242, 437, 458
HpaII	CCGG	2 cut(s)	199, 203
HphI	GGTGA	2 cut(s)	365, 442
Hpy166II	GTNNAC	1 cut(s)	356
Hpy188I	TCNGA	4 cut(s)	160, 181, 424, 445
Hpy188III	TCNNGA	3 cut(s)	71, 378, 462
Hpy8I	GTNNAC	1 cut(s)	356
HpyAV	CCTTC	3 cut(s)	155, 213, 459
HpyCH4III	ACNGT	2 cut(s)	320, 365
HpyCH4IV	ACGT	2 cut(s)	358, 514
HpyCH4V	TGCA	3 cut(s)	60, 100, 341
HpySE526I	ACGT	2 cut(s)	358, 514
Hsp92II	CATG	2 cut(s)	191, 488
HspAI	GCGC	1 cut(s)	53
KroI	GCCGGC	1 cut(s)	198
KroNI	GCCGGC	1 cut(s)	200
Kzo9I	GATC	6 cut(s)	67, 115, 289, 374, 497, 505
Lsp1109I	GCAGC	2 cut(s)	20, 399
MaeI	CTAG	3 cut(s)	306, 327, 462
MaeII	ACGT	2 cut(s)	358, 514
MaeIII	GTNAC	3 cut(s)	301, 359, 430
MalI	GATC	6 cut(s)	69, 117, 291, 376, 499, 507
MboI	GATC	6 cut(s)	67, 115, 289, 374, 497, 505
MboII	GAAGA	2 cut(s)	432, 458
MflI	RGATCY	1 cut(s)	497
MluCI	AATT	5 cut(s)	27, 154, 175, 248, 529
MnlI	CCTC	3 cut(s)	374, 399, 421
MroNI	GCCGGC	1 cut(s)	198
MseI	TTAA	1 cut(s)	24
MspI	CCGG	2 cut(s)	199, 203
MspR9I	CCNGG	2 cut(s)	204, 294
MvaI	CCWGG	1 cut(s)	294
NaeI	GCCGGC	1 cut(s)	200
NciI	CCSGG	1 cut(s)	204
NdeII	GATC	6 cut(s)	67, 115, 289, 374, 497, 505
NgoMIV	GCCGGC	1 cut(s)	198
NlaIII	CATG	2 cut(s)	191, 488
NlaIV	GGNNCC	2 cut(s)	46, 126
NmuCI	GTSAC	2 cut(s)	359, 430
PdiI	GCCGGC	1 cut(s)	200
PfeI	GAWTC	6 cut(s)	14, 191, 227, 242, 437, 458
PfoI	TCCNGGA	1 cut(s)	292
PkrI	GCNGC	2 cut(s)	10, 389
Ple19I	CGATCG	1 cut(s)	508
Psp6I	CCWGG	1 cut(s)	292
PspFI	CCCAGC	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	2 cut(s)	46, 126
PsuI	RGATCY	1 cut(s)	497
PvuI	CGATCG	1 cut(s)	508
RgaI	GCGATCGC	1 cut(s)	508
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	2 cut(s)	9, 388
Sau3AI	GATC	6 cut(s)	67, 115, 289, 374, 497, 505
ScrFI	CCNGG	2 cut(s)	204, 294
SetI	ASST	6 cut(s)	130, 361, 385, 422, 432, 517
SfaAI	GCGATCGC	1 cut(s)	508
SgfI	GCGATCGC	1 cut(s)	508
SpeI	ACTAGT	1 cut(s)	305
Sse9I	AATT	5 cut(s)	27, 154, 175, 248, 529
SspMI	CTAG	3 cut(s)	306, 327, 462
StyD4I	CCNGG	2 cut(s)	202, 292
TaaI	ACNGT	2 cut(s)	320, 365
TaiI	ACGT	2 cut(s)	361, 517
TasI	AATT	5 cut(s)	27, 154, 175, 248, 529
TatI	WGTACW	1 cut(s)	252
TfiI	GAWTC	6 cut(s)	14, 191, 227, 242, 437, 458
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	2 cut(s)	97, 370
TseFI	GTSAC	2 cut(s)	359, 430
TseI	GCWGC	2 cut(s)	8, 387
Tsp45I	GTSAC	2 cut(s)	359, 430
TspDTI	ATGAA	3 cut(s)	17, 204, 240
TspRI	CASTG	2 cut(s)	97, 370
XapI	RAATTY	2 cut(s)	27, 175
XbaI	TCTAGA	1 cut(s)	461
XspI	CTAG	3 cut(s)	306, 327, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.