Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Reverse (-)

53011468 .. 53012228

Gene Structure 761 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26010

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGAAGAGTCAGAAACCTCAGCAGACGGAGGCGTTCAGCCTAAAACGGAGGCAGGGATGAGCCGGAAGGAGAAGTGGAAAGCCATGAAGAAGATGAAGCGGAAGCAGACGCGGAAGGAAATCGCTCTCAAAGAGCGTCAGGAAGAAGAGGCGAGGCCCCAAGATCCTCAAGAGCTTATCAACATGGAGCAAGAGGAGGCCAAGAGGTCCGAGAGTGTGAGGATCTTGTTCGAGGAGCGAGAGAGAGATTGGATTGAAGCCATGGAGATTCGAAAGAGGAAACGAATCGAACAAGAAGACGAGGAGCATAGAATTAAGGATCTGGAAGACGAAGAACTATTTTGTAAGCAACAGATCAAAAATGCAAATGATGATGGTGATGATGACTGGGAGTATGTAGAAGAGGGACCTGCTGAAATCATCTGGAAGGAAAATGAAGTAATTGTCAAGAAGAAAAGAGTCAAGGTTCCAAAGAGGAATAAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030628 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

162

Amino Acids

19.56

Weight (kDa)

5.18

Isoelectric Point (pI)

85.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	418
AccII	CGCG	1 cut(s)	112
AciI	CCGC	2 cut(s)	100, 112
AclWI	GGATC	3 cut(s)	158, 230, 327
AgsI	TTSAA	1 cut(s)	257
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
AlwI	GGATC	3 cut(s)	158, 230, 327
AoxI	GGCC	2 cut(s)	155, 198
AspS9I	GGNCC	3 cut(s)	156, 207, 407
AsuHPI	GGTGA	1 cut(s)	389
AsuII	TTCGAA	1 cut(s)	271
AvaII	GGWCC	2 cut(s)	207, 407
BbsI	GAAGAC	2 cut(s)	303, 333
BbvCI	CCTCAGC	1 cut(s)	19
BccI	CCATC	1 cut(s)	368
BfaI	CTAG	1 cut(s)	487
BfuAI	ACCTGC	1 cut(s)	418
Bme18I	GGWCC	2 cut(s)	207, 407
BmgT120I	GGNCC	3 cut(s)	156, 207, 407
BmiI	GGNNCC	3 cut(s)	158, 408, 468
BmrI	ACTGGG	1 cut(s)	397
BmuI	ACTGGG	1 cut(s)	397
BpiI	GAAGAC	2 cut(s)	303, 333
Bpu10I	CCTNAGC	1 cut(s)	19
Bpu14I	TTCGAA	1 cut(s)	271
BpuEI	CTTGAG	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	261
Bse1I	ACTGG	1 cut(s)	392
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	1 cut(s)	63
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	392
BseRI	GAGGAG	3 cut(s)	209, 248, 317
Bsh1236I	CGCG	1 cut(s)	112
BshFI	GGCC	2 cut(s)	157, 200
BsiSI	CCGG	1 cut(s)	64
BslFI	GGGAC	1 cut(s)	420
BsmFI	GGGAC	1 cut(s)	420
BsnI	GGCC	2 cut(s)	157, 200
Bsp119I	TTCGAA	1 cut(s)	271
Bsp143I	GATC	4 cut(s)	163, 222, 319, 354
Bsp19I	CCATGG	1 cut(s)	261
BspACI	CCGC	2 cut(s)	100, 112
BspANI	GGCC	2 cut(s)	157, 200
BspCNI	CTCAG	1 cut(s)	32
BspFNI	CGCG	1 cut(s)	112
BspLI	GGNNCC	3 cut(s)	158, 408, 468
BspMI	ACCTGC	1 cut(s)	418
BspPI	GGATC	3 cut(s)	158, 230, 327
BspT104I	TTCGAA	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	392
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	4 cut(s)	163, 222, 319, 354
BssT1I	CCWWGG	1 cut(s)	261
Bst6I	CTCTTC	2 cut(s)	141, 396
BstBI	TTCGAA	1 cut(s)	271
BstDEI	CTNAG	1 cut(s)	19
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	63
BstFNI	CGCG	1 cut(s)	112
BstKTI	GATC	4 cut(s)	166, 225, 322, 357
BstMBI	GATC	4 cut(s)	163, 222, 319, 354
BstUI	CGCG	1 cut(s)	112
BstV2I	GAAGAC	2 cut(s)	303, 333
BstX2I	RGATCY	3 cut(s)	163, 222, 319
BstYI	RGATCY	3 cut(s)	163, 222, 319
BsuRI	GGCC	2 cut(s)	157, 200
BtgI	CCRYGG	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	63
BveI	ACCTGC	1 cut(s)	418
Cfr13I	GGNCC	3 cut(s)	156, 207, 407
CseI	GACGC	2 cut(s)	118, 125
CviAII	CATG	3 cut(s)	85, 184, 262
CviJI	RGCY	7 cut(s)	40, 63, 83, 157, 175, 200, 260
CviKI_1	RGCY	7 cut(s)	40, 63, 83, 157, 175, 200, 260
DdeI	CTNAG	1 cut(s)	19
DpnI	GATC	4 cut(s)	165, 224, 321, 356
DpnII	GATC	4 cut(s)	163, 222, 319, 354
Eam1104I	CTCTTC	2 cut(s)	141, 396
EarI	CTCTTC	2 cut(s)	141, 396
Eco130I	CCWWGG	1 cut(s)	261
Eco47I	GGWCC	2 cut(s)	207, 407
EcoO109I	RGGNCCY	2 cut(s)	156, 407
EcoT14I	CCWWGG	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	3 cut(s)	88, 187, 265
FaiI	YATR	5 cut(s)	86, 185, 263, 309, 396
FaqI	GGGAC	1 cut(s)	420
FatI	CATG	3 cut(s)	84, 183, 261
FokI	GGATG	1 cut(s)	70
FspBI	CTAG	1 cut(s)	487
HaeIII	GGCC	2 cut(s)	157, 200
HapII	CCGG	1 cut(s)	64
HgaI	GACGC	2 cut(s)	118, 125
Hin1II	CATG	3 cut(s)	88, 187, 265
HinfI	GANTC	4 cut(s)	8, 268, 285, 459
HpaII	CCGG	1 cut(s)	64
HphI	GGTGA	1 cut(s)	389
Hpy188I	TCNGA	2 cut(s)	13, 211
Hpy188III	TCNNGA	5 cut(s)	140, 170, 323, 424, 448
HpyAV	CCTTC	3 cut(s)	61, 109, 421
HpyCH4V	TGCA	1 cut(s)	365
HpyF3I	CTNAG	1 cut(s)	19
Hsp92II	CATG	3 cut(s)	88, 187, 265
Kzo9I	GATC	4 cut(s)	163, 222, 319, 354
LmnI	GCTCC	3 cut(s)	187, 235, 304
LpnPI	CCDG	7 cut(s)	39, 77, 125, 308, 373, 409, 423
MaeI	CTAG	1 cut(s)	487
MalI	GATC	4 cut(s)	165, 224, 321, 356
MboI	GATC	4 cut(s)	163, 222, 319, 354
MflI	RGATCY	3 cut(s)	163, 222, 319
MluCI	AATT	2 cut(s)	312, 441
MlyI	GAGTC	2 cut(s)	17, 468
MseI	TTAA	1 cut(s)	315
MspI	CCGG	1 cut(s)	64
MvnI	CGCG	1 cut(s)	112
NcoI	CCATGG	1 cut(s)	261
NdeII	GATC	4 cut(s)	163, 222, 319, 354
NlaIII	CATG	3 cut(s)	88, 187, 265
NlaIV	GGNNCC	3 cut(s)	158, 408, 468
NspV	TTCGAA	1 cut(s)	271
PfeI	GAWTC	2 cut(s)	268, 285
PleI	GAGTC	2 cut(s)	16, 467
PpsI	GAGTC	2 cut(s)	16, 467
PpuMI	RGGWCCY	1 cut(s)	407
Psp5II	RGGWCCY	1 cut(s)	407
PspN4I	GGNNCC	3 cut(s)	158, 408, 468
PspPI	GGNCC	3 cut(s)	156, 207, 407
PspPPI	RGGWCCY	1 cut(s)	407
PsuI	RGATCY	3 cut(s)	163, 222, 319
SaqAI	TTAA	1 cut(s)	315
Sau3AI	GATC	4 cut(s)	163, 222, 319, 354
Sau96I	GGNCC	3 cut(s)	156, 207, 407
SchI	GAGTC	2 cut(s)	17, 468
SetI	ASST	5 cut(s)	20, 177, 209, 412, 468
SfuI	TTCGAA	1 cut(s)	271
SinI	GGWCC	2 cut(s)	207, 407
SmlI	CTYRAG	1 cut(s)	168
SmoI	CTYRAG	1 cut(s)	168
Sse9I	AATT	2 cut(s)	312, 441
SsiI	CCGC	2 cut(s)	100, 112
SspMI	CTAG	1 cut(s)	487
StyI	CCWWGG	1 cut(s)	261
TaqI	TCGA	3 cut(s)	231, 271, 288
TasI	AATT	2 cut(s)	312, 441
TfiI	GAWTC	2 cut(s)	268, 285
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TspDTI	ATGAA	3 cut(s)	101, 110, 450
TspGWI	ACGGA	2 cut(s)	42, 62
VpaK11BI	GGWCC	2 cut(s)	207, 407
XspI	CTAG	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.